KEGG   Sus scrofa (pig): 100462746
Entry
100462746         CDS       T01009                                 
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform 1
  KO
K17890  autophagy-related protein 16-1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04136  Autophagy - other
ssc04140  Autophagy - animal
ssc04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100462746 (ATG16L1)
   04136 Autophagy - other
    100462746 (ATG16L1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    100462746 (ATG16L1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100462746 (ATG16L1)
   03029 Mitochondrial biogenesis [BR:ssc03029]
    100462746 (ATG16L1)
Membrane trafficking [BR:ssc04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    100462746 (ATG16L1)
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    100462746 (ATG16L1)
Mitochondrial biogenesis [BR:ssc03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    100462746 (ATG16L1)
SSDB
Motif
Pfam: ATG16 WD40 ANAPC4_WD40 eIF2A NBCH_WD40 DUF2332 ZapB Img2 CCDC93_CC
Other DBs
NCBI-GeneID: 100462746
NCBI-ProteinID: NP_001177201
Ensembl: ENSSSCG00000016300
UniProt: D7RA19
Position
15:133651294..133693472
AA seq 607 aa
MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEK
HDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQR
DKEMQVNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVLADDTSDHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSFSSVPAPQDDVDT
HPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKG
SLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKHWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
IVREMELLGKITALDFNPERTELLSCSRDDLLKIIDLRINAVRQTFSVPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSK
AVLWSDY
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtcgtcgagcctccgcgccgcggtcttccctcggtggaagcgccacatctcggaggag
ctgaggcgccgggaccggctgcagaggcaggcgttcgaagagatcatcctgcagtataac
aagttgctggaaaagtccgatcttcattcagtgctggcccataagctacaagctgaaaag
catgacataccaaacaggcatgagataagtcccggacacgatggtgcgtggaatgacagt
cagctccaagaaatggcccagctgaggattaaacaccaagaggaactgactgagttgcac
aaaaaacgtggggagttagctcagctggtgattgacctgaataaccagatgcagcagagg
gacaaggagatgcaggtgaatgaagccaagattgcagaatgcctgcagaccatctctgac
ctggagaccgagtgcctggaactgcgcaccaagcttcaggaccttgagagagccaaccag
accctgaaggatgagtacgacgccctgcagatcacgttcactgccctggaggagaagctg
cggaagacgactgaggagaaccaggagctggtcaccagatggatggccgagaaagcccag
gaagccaaccgcctaaatgcagagaatgaaaaggattcgaggcggcggcaagcccggcta
cagaaggaactcgcagaagcagcaaaggaacccctgccagtcgaacaggatgatgacatt
gaagtccttgcagatgacacctccgatcaccctgaggagacctctcccgtgcgagccatc
agcagagcagccactaagcgactctcgcagcctgctggaggccttctggactctatcact
aatatctttgggaggcgctctttctcttccgttcctgctccccaggatgacgtggatacc
catccaggttccagtaaagaagtgagggtgccagtgaccgccgtgtgtgtctttgacgct
catgacggggaggtcaatgctgtgcagttcagtccgggctcccggctgctggccacagga
ggcatggatcggagggtgaagctctgggaggtgtttggagacaaatgtgagttcaaaggt
tccctctctggcagtaatgcaggaattacaagcattgaattcgatagtgccggatcttac
ctcttagcagcttcaaatgattttgcaagccgaatctggactgtggatgactatcggtta
cggcacacgctcacggggcacagcggcaaagtgctctctgccaagttcctgctggacaac
gcgcgtatcgtttctggaagtcatgaccggaccctcaaacactgggatctacgcagcaaa
gtctgcataaagacggtatttgcgggctccagctgcaatgacattgtctgcacagagcag
tgtgtaatgagtggacacttcgacaagaaaattcgtttctgggacatccgttcagaaagc
atcgtccgagagatggagctcttgggaaagattactgccctggactttaacccagaaaga
accgaactcctcagctgctctcgtgatgacctgctaaaaattattgaccttcgaattaat
gccgtcaggcagacgttcagtgtacctggcttcaagtgcggctccgattggacgagggtc
gtgttcagccctgatggcagttacgtggcagcgggctcggccgagggctctctctacgtc
tggagtgtgctctccgggaaggtggagaaggtcctttcaaagcatcacagctcgcccatc
aacgcagtggcctggtccccctccggcgcccacgtcgccagtgtggacaaaggaagcaaa
gctgtgctgtggtccgactactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (10)   
   RefSeq(nuc) (4)   
   GenBank (3)   
   EMBL (3)   
Protein domain (9)   
   Pfam (9)   
All databases (44)   

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