KEGG   Sus scrofa (pig): 100505387
Entry
100505387         CDS       T01009                                 
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
  KO
K11592  endoribonuclease Dicer [EC:3.1.26.-]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100505387 (DICER1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssc03036]
    100505387 (DICER1)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    100505387 (DICER1)
   microRNA pathway
    RISC loading complex
     100505387 (DICER1)
SSDB
Motif
Pfam: Dicer_platform Dicer_dsRBD Ribonuclease_3 Dicer_PBD Ribonucleas_3_3 Dicer_dimer PAZ DEAD ResIII Helicase_C Amidoligase_2
Other DBs
NCBI-GeneID: 100505387
NCBI-ProteinID: NP_001184123
Ensembl: ENSSSCG00000028225
UniProt: E2JE26
Position
7:complement(116361630..116436471)
AA seq 1915 aa
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCSVALNVLKNGYLALSDINLLVFDECHLA
ILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNIAVHSKERDSTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKVHALCE
GHFSPAALDLRFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSSNFI
TGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDL
PTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVESGET
DLEPVVDDDDIFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELP
DGTFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKET
VKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTT
PLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLS
LQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMED
IEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSK
FPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEK
RKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAG
VGVRSLPVDFRYPNLDFGWKKSIDSKSFISVANSSSAENENYCKHSPLVPEHAAHRGANR
PSALENHGHTSVTCRALLSESPAKLPIDVATDLTAVNGLSYNKNLANGSYDLANRDFCQG
NHLSYYKQEIPVQPTTSYPIQNLYNYENQPQPSDECTLLSNKYLDGNANKSTSEGRPTMP
GTTEAGKALSERMASAQSPAPGYSPRTPGPNPGLILQALTLSNASDGFNLERLEMLGDSF
LKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLP
PGYVVNQDKSNTDKWEKDEMTKDCVLANGRLDADLEEEDAAALMWRPPREEAEDDEDLLE
YDQEHIRFIDSMLMGSGAFVKKIALAPFAAADPAYEWKMPKKAPLGSMPFSADFEDFDYS
SWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVE
ALLGCYLTSCGERAAQLFLCSLGLKVLPAVKRTDRAQAACPARESFTSQQKTLSGGRPAA
GSRSSGLKDLEYGCLKIPPRCMFDHPDADRTLSHLISGFENFERKINYSFKNKAYLLQAF
THASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFAS
LAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKA
MGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKF
SPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq 5748 nt   +upstreamnt  +downstreamnt
atgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgct
tcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataac
atttatacgccaagaaaatatcaggttgaactgcttgaagcagctctggatcataatacc
atagtctgtttaaacactggctcagggaagacgtttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagacttcaacagaaatggcaaaaggacggtgttcttggtc
aactctgcaaaccaggttgctcaacaagtgtcagctgttaggactcactcggatctcaag
gttggggaatactcgaacctagaagtaaatgcatcttggacaaaagagaaatggaaccaa
gagtttactaagcaccaggttcttgttatgacttgctctgtcgccttgaatgttttgaaa
aatggttacttagcactgtcagacattaaccttttggtgttcgatgagtgtcatcttgca
atcctagatcacccctaccgagagattatgaagctctgtgaaaattgtccatcatgtcct
cgtattttggggctaactgcttccattttaaatgggaaatgtgatccagaggaattggaa
gaaaagatacagaaactggagaaaattcttaagagtaatgctgaaactgcaactgacttg
gtggtcttagacagatatacttctcagccatgtgagattgtggtagactgtggaccattt
actgacagaagtgggctttatgaaagactgctgatggaattagaagaagctctcaatttt
atcaatgactgtaacatagctgtacattcaaaagaaagagattctactttaatttccaaa
cagatactgtcagactgtcgtgcagtattggtagttctgggaccttggtgtgcagataaa
gtagctggaatgatggtaagagaactacagaaatatatcaaacatgaacaagaggagctg
cacaggaaatttctattgtttacagacactttcctgaggaaagtacacgcgctgtgtgaa
gggcacttctcccctgccgcgcttgacctgagatttgtgactcctaaagtcataaaactg
ctcgaaatcttacgcaagtacaaaccctacgagcgacagcagtttgaaagcgttgagtgg
tataataataggaatcaggataattacgtgtcttggagtgattcggaggatgatgaggag
gacgaagaaattgaagaaaaagaaaagccggagacgaattttccttctccatttaccaat
attttatgtggaattatttttgtggaaagaagatacacggcagttgtcttaaacagattg
ataaaggaagctggcaaacaagatccagagctggcttacatcagcagcagcaattttata
actggacatggcattggaaagaatcagcctcgtaacaaacagatggaagcagaattcaga
aaacaggaagaggtacttaggaaatttcgagctcacgaaaccaacctgctgattgccacg
agcattgtggaagagggtgttgatataccaaaatgcaacctggtggttcgtttcgatctg
cccacagagtatcgatcctacgttcagtctaagggaagagcaagggcgccaatctctaat
tacgtcatgttagcagatacggacaaaataaagagttttgaagaagaccttaaaacatac
aaagctattgaaaagatcttgagaaacaaatgctccaagtccgttgagagtggggagacc
gaccttgagcccgtggtggatgacgacgacatcttccccccctacgtgctgcggcccgac
gatggcggtccccgggtcaccatcaacacggccattggacacatcaacagatactgtgct
agattacccagtgacccgtttactcatctggctcctaagtgtagaacccgagagttgcct
gatggtacattttattcaactctttatctgccaattaattcacctcttcgagcctccatt
gttggccccccaatgagctgtatacgattggctgaaagagtcgtggctctcatttgctgt
gaaaaactgcacaaaattggtgaactggatgaccatttgatgccggttgggaaagagacg
gttaaatacgaagaggagcttgatttacatgatgaggaggagaccagtgttccaggaaga
ccaggctccacaaaacgaagacagtgctacccaaaagcgattccagaatgtttgcgggac
agctaccccaagcccgatcagccctgttacctgtatgtgatagggatggttctgacaaca
cctctccccgatgaactcaactttagaaggcggaagctctatccccccgaggacaccaca
agatgcttcggaatactgacagccaaacccatacctcagattcctcactttcctgtgtac
acacgctctggagaggtcaccatttccattgagttgaagaagtctggtttcacgctgtct
ctgcaaatgcttgagctgattacaagacttcaccagtatatattttcacatattcttcgg
cttgagaaacctgcactagagtttaaacccaccgacgctgactcagcatactgtgttcta
cctcttaatgtcgttaatgactccagcactttggacattgactttaaattcatggaagac
atcgagaaatcagaagctcgcataggcattcccagtacaaagtattcaaaagaaacacct
tttgtttttaaattagaagattaccaagatgcagttatcattccaaggtatcgcaatttt
gatcagcctcatcgattttacgtagctgatgtgtacactgatcttaccccactgagtaaa
tttccttcccctgagtatgaaacttttgcagaatattataaaacgaagtataaccttgac
ctgaccaatctcaaccagccgctgctggatgtggaccacacatcgtcaagacttaatctt
ttgacacctcgccatttgaatcagaaggggaaagctcttcctctgagcagcgctgaaaag
aggaaagccaaatgggagagtctgcagaacaaacagatcctggttccggaactctgtgct
atccatccaattccagcatcactgtggagaaaagcagtctgtctccccagcatcctttat
cgccttcactgccttctgaccgcggaggagctaagagcccagacggccagcgatgctggt
gtgggagtcagatcacttcccgtggattttagataccccaacttagacttcgggtggaaa
aaatccatcgacagcaaatctttcatctcagttgctaactcctcttcagctgaaaacgag
aactactgtaagcacagccccctcgtccctgaacatgctgcacatcgaggtgctaaccga
ccctccgctctcgaaaatcacggccacacgtctgtgacctgccgagcgctcctcagcgag
tcccctgctaagctcccgatcgacgttgcaacagatctgacagcagtgaacggtctttcg
tacaataaaaatcttgccaatggcagttacgacttagctaacagagacttttgccaagga
aatcatctgagttactacaagcaggaaatacctgtacaaccaactacctcatatcccatt
cagaatttatacaattacgagaaccagccccagcccagcgatgaatgtactctactgagt
aataaataccttgatggaaatgctaacaaatctacctcagaaggacgtcccacgatgcct
ggtactacagaggctggtaaggcgctttcggaaaggatggcttctgcgcagagccctgct
ccgggctactccccgaggactcctggcccaaaccctggactcatccttcaggctctgacc
ctttcaaacgctagcgacggatttaacctggagcggctcgaaatgctcggtgactccttc
ttaaagcacgccatcaccacgtatctcttttgcacttaccctgatgctcacgagggccgc
ctttcgtatatgagaagcaaaaaggtcagcaactgtaacctgtatcggcttgggaagaag
aagggcctgcccagccgcatggtggtgtcgatatttgatccccctgtgaactggcttcct
cctggttatgtagtaaatcaagacaaaagtaacacagacaaatgggaaaaagatgaaatg
acaaaagactgcgtgctggctaacggcagactggacgccgacctggaggaggaggacgcc
gccgcgctcatgtggaggccgcccagggaggaggccgaggacgacgaggacctcctggag
tacgaccaggagcacatcaggttcatagacagcatgctgatggggtcaggagccttcgtc
aagaagattgctcttgctcccttcgccgccgccgatcctgcctacgaatggaagatgccc
aaaaaggcccccctggggagcatgcccttttccgcagatttcgaggactttgactacagc
tcgtgggatgccatgtgctatctggaccccagcaaagccgttgaggaggatgactttgtg
gtgggcttctggaatccatccgaagagaactgtggtgtggacacaggcaaacagtccatt
tcttacgacttgcacacggagcagtgcatcgctgacaaaagcatcgccgactgtgtggaa
gccctgctgggctgctacttgaccagctgtggcgagcgggccgctcagctcttcctctgc
tcgctgggcctgaaggtgctcccggcggtgaagaggaccgatcgggcacaggccgcctgc
ccggccagggagagcttcaccagccaacaaaagaccctttccgggggccggcccgccgcc
ggctcccgctcttccgggttgaaagacttggagtacggctgtttgaagatcccaccgaga
tgtatgtttgatcacccagacgcagacaggacactcagtcacctcatctcgggctttgag
aacttcgaaaggaagatcaactacagcttcaagaataaggcttaccttctgcaggccttc
acccacgcctcctaccactacaacaccatcaccgattgttaccagcgcctggagttcctg
ggagatgccattctggactacctcataaccaagcacctttacgaagacccgcggcagcac
tccccgggggtcctgaccgacctgcgctctgctctggtcaacaacaccatcttcgcctcg
ctggccgtcaagtacgactaccacaagtacttcaaggccgtgtcgcccgagctcttccac
gtcatcgatgattttgtgcagtttcagcttgagaagaacgagatgcaggggatggattct
gagcttaggagatctgaggaggatgaagagaaagaagaggatattgaagttccgaaggcc
atgggggacatttttgagtcgcttgctggtgccatttacatggatagtggaatgtcactg
gaggtggtttggcaggtgtactatccgatgatgcggccgctaatagaaaaattttctgca
aacgtgccccgttcgcctgtgcgagaattgcttgaaatggaaccagaaaccgccaaattt
agcccggctgagagaacttacgatggcaaggtcagagtcaccgtggaagtcgtaggaaag
gggaaattcaaaggtgttggccgaagttacaggattgccaaatctgcagcagcacgacga
gccctgcgaagcctcaaagctaatcaacctcaggttcccaacagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (20)   
   UniProt (1)   
   RefSeq(pep) (19)   
DNA sequence (27)   
   RefSeq(nuc) (19)   
   GenBank (4)   
   EMBL (4)   
Protein domain (11)   
   Pfam (11)   
All databases (93)   

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