KEGG   Sus scrofa (pig): 100511271
Entry
100511271         CDS       T01009                                 
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X2
  KO
K10754  replication factor C subunit 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03030  DNA replication
ssc03410  Base excision repair
ssc03420  Nucleotide excision repair
ssc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100511271 (RFC1)
   03410 Base excision repair
    100511271 (RFC1)
   03420 Nucleotide excision repair
    100511271 (RFC1)
   03430 Mismatch repair
    100511271 (RFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssc03032]
    100511271 (RFC1)
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100511271 (RFC1)
DNA replication proteins [BR:ssc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    100511271 (RFC1)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     100511271 (RFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA AAA_22 PTCB-BRCT AAA_14 Rad17 BRCT_2 AAA_5 RuvB_N AAA_7 AAA_30 AAA_16 AAA_33 AAA_18 Zeta_toxin nSTAND3 AAA_17 RNA_helicase NTPase_1 AAA_19 TIP49
Other DBs
NCBI-GeneID: 100511271
NCBI-ProteinID: XP_005666645
Ensembl: ENSSSCG00000008788
Position
8:complement(30552369..30635932)
AA seq 1141 aa
MDIRKFFGVVPSGKKLVSETVKKNEKSKSAEETLKTKKGIKEIKVNSSCKDDDFQQKQPS
KKKRIIYDSDSESEETVQVKNTRKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDFVCKK
AASKSKENGGSTNNYLGASNMKKNEENTKAKNKPLSPIKLTPTSVLDYFGTGSVQRSDKK
MVASRKKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKAKK
ALKDLEERETFSSLQASLCKAEKPKYPHKERFSDERKNYSPKKQKCESSKESQPHSRSSA
HKIRETSSPKASSKLALLKRKEESSNNKTEPMGSKRKEDAIELKETRTPKKIKGSPAKKE
SISPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSGKAAALGTKIIDEDGLLNLIRTMPGK
KSKYEIAVEAEMKKEKSKLERTPQKKDQGKRKVSPTKKESESKKCKQTPKRESSINSIKK
ETSVFRKGLDFKEQVAEETDGDSRARNLADDSSENKVENLLWVDKYKPASLKTIIGQQGD
QSCANKLLRWLQNWHKSPSEDKKRAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTTASLV
CQELGYSYVELNASDTRSKNSLKEIIAESLNNTSIKGFYSSGAAHSVSTKHALIMDEVDG
MAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKGAM
MSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSHRAKKDI
KLGPFDVARKVFVTGEETAHMSLMDKSDLFFHDYSIAPLFVQENYIHVKPVAAGGDMKKH
LMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWLG
KHSSAGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVQPLTSQGVEGVQDAVAL
MDTYYLMKEDFENIMEISSWGGRPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLQAVKTHR
HSTGPVLDSEYNEELNEDDSQSDEKDQDTLESDAMIKKKPKPSKSEKDKESRKGKGKSSK
K
NT seq 3426 nt   +upstreamnt  +downstreamnt
atggatattcggaaattctttggggttgtaccaagtggaaagaaacttgtaagtgaaaca
gtaaagaagaatgagaaatcaaagtctgctgaagaaactttaaaaacaaagaaaggaata
aaggaaatcaaggtaaatagttcttgtaaggacgatgacttccaacagaagcaaccaagc
aagaaaaagagaatcatctatgattcagattcagaatcagaggagacagtgcaggtgaaa
aacaccagaaagcgaccagaaaaattgccactgtcttctaaacctgctaaaattcgacac
caggatcctgttacatacatttcagaaacagatgaagaagatgactttgtgtgtaagaag
gcagcctctaaatctaaagagaatggaggatctacaaataattatcttggagcatcaaac
atgaaaaagaatgaagaaaacactaaggccaagaataagccattgtcaccaataaaactt
acccccacgtcagtgcttgattattttggaactggaagtgttcaaagatcagataagaag
atggttgccagcagaaaaaaagaaccttcccaaaatgcagatgattccagattaaatgac
gaagccattgccaagcagttacaacttgatgaagatgcagagctggagagacagctgcat
gaggatgaagagtttgccagaacattagccatgttggatgaagaacccaaggccaaaaag
gctctaaaggacctggaagagagagagacattttcatctctacaagctagtttatgtaaa
gcagaaaaacctaaatatcctcataaagagcgattttcagatgaaagaaagaactacagt
cctaagaagcaaaaatgtgaaagttcaaaagaatctcagccacattccaggtcatcagct
cataaaataagagaaacttcttctccaaaagccagttccaagctggcacttttgaaaaga
aaagaagagagttctaataacaaaacagagccgatgggctccaaaaggaaagaagatgcc
attgaattaaaagagaccagaactcctaagaaaatcaaaggttctccagctaaaaaagag
tccataagtcccgaagattctgaaaagagacgtactaattatcaggcttatcgaagctac
ttaaatcgagaaggtcccaaagctctgggctccaaagaaataccaaagggagctgaaaat
tgcttggaaggccttacgtttgtaatcacaggagtgctggagtccattgaaagagatgag
gccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtcagcaagaaaaca
aactaccttgtcatgggtcgtgatagcggtcagtccaagagcggtaaggcagcagccttg
ggaacaaaaattattgatgaggatggcctattgaatctgattcgaactatgccaggcaag
aagtccaagtatgaaatagcagttgaggctgagatgaagaaagaaaaatccaaattggaa
agaacaccccaaaaaaaggatcaaggaaaaagaaaagttagtccaactaagaaggaatca
gaatctaaaaagtgcaaacagactcccaaaagggaaagctctataaattcaataaaaaag
gaaaccagtgtgtttcggaaaggcctggacttcaaggagcaggtggctgaggagacagat
ggtgacagccgggctaggaatttggctgatgacagcagtgaaaacaaagtggaaaatttg
ctctgggtggataaatataagccagcctcgctcaagaccataattggacagcaaggtgac
cagagctgtgccaacaaactcctacgctggctccaaaactggcacaagagtccatccgaa
gataagaaacgcgcagcaaaatttggtaaatttgctggcaaagatgatggctccagtttt
aaagctgcattgctctcaggccctccaggtgttggcaaaaccaccacagcttctctggtt
tgtcaggaattgggatatagctatgtggaactgaatgcaagtgacactcggagtaagaac
agtttgaaggagattattgctgagtcgctgaataataccagcatcaaaggcttttattca
agtggagcagcccattcagtaagcacgaaacatgctctcatcatggatgaagtagatggc
atggcaggcaatgaggacaggggaggaattcaggaattaattggtttgataaaacataca
aaaattcccattatttgtatgtgcaatgatagaaatcaccccaagattcgctccttggtt
cattattgtttcgatcttcgttttcaaagacctcgggttgaacagattaagggtgctatg
atgtctattgcatttaaagagggtttaaaaatcccccctccagctatgaatgaaataatt
ttgggagccaatcaagatattagacaggttttacataatctgagtatgtggtgtgcacga
agtaaggcactaacctatgaccaggctaaggctgattctcacagagccaaaaaggatatc
aaactgggcccatttgatgttgcccgaaaggtgtttgtaactggagaggagactgctcat
atgtcacttatggacaagtcggatctctttttccatgattattcaatagcaccgctcttt
gtccaggagaactacattcacgtgaagcctgtagctgcaggaggtgacatgaaaaagcac
ctgatgcttttaagcagagcagcagacagcatttgtgatggtgacctagtggaccgtcag
atccgcaataagcaaaactggagccttctgcccacacaggccatttatgccagtgttctt
cccggagagttaatgagggggtacatgacccagtttccctccttcccaagctggttgggg
aagcactcatctgcgggcaaacacgatcgtattgttcaggacctagcattgcatatgagt
ctcagaacttactccagcaaaaggactgtaaacatggattatctgtcacatataagggat
gcacttgtacagcccttgacctcacaaggggtggaaggagtacaagatgctgttgctctt
atggacacatattatttgatgaaagaagactttgagaatattatggaaattagcagctgg
ggaggcagacctagtcctttctccaagctggatcccaaggtgaaagcagccttcacaaga
gcttacaataaggaagcccaccttactccgtattcactgcaggcagtaaagacacacaga
cacagcacaggtccagtgctggattctgaatacaacgaagagttaaatgaagatgactct
caatctgatgagaaagaccaggacactttagaaagtgatgctatgatcaagaaaaagccg
aaaccttcaaaatcagaaaaagataaggagtccagaaaaggaaaagggaaaagttcaaag
aaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (22)   
   Pfam (22)   
All databases (59)   

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