KEGG   Sus scrofa (pig): 100511396
Entry
100511396         CDS       T01009                                 
Symbol
ATG16L2
Name
(RefSeq) autophagy-related protein 16-2 isoform X1
  KO
K20868  autophagy-related protein 16-2
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100511396 (ATG16L2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100511396 (ATG16L2)
   03029 Mitochondrial biogenesis [BR:ssc03029]
    100511396 (ATG16L2)
Membrane trafficking [BR:ssc04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    100511396 (ATG16L2)
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    100511396 (ATG16L2)
Mitochondrial biogenesis [BR:ssc03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    100511396 (ATG16L2)
SSDB
Motif
Pfam: ATG16 WD40 NBCH_WD40 MIF4G_like_2
Other DBs
NCBI-GeneID: 100511396
NCBI-ProteinID: XP_003129670
Ensembl: ENSSSCG00000014819
UniProt: A0A480MN42 A0A4X1USJ1
Position
9:7346973..7360189
AA seq 621 aa
MAGPSDPGAPVACWKRHIVRQLRLRDRTQKALFLELVPAYNRLLEKAELLARFSETLLPE
PNSVTPATHQGPWEEEEAGPDSDQVPSPAALRVKWQEEEEGLRLECGEMAYQVVVKSAAL
GALESQLEERQSRLAALEARVAQLQEARAKKARQVDARRALNAAQQAAYEALRAHAGRQE
AALRRLQEEARDLLERLVQRKARAAAERNLRNERRERAKQARVSLELKKAAKRTVSISES
PDALDDGITEEAEPPALAAEPKSLESEAIEKWRRPFRSASATSLTVFRCVDVVKGLLDFK
KRRGHSIGGAPEQRYQSIPVCLAARLPTRAQDVLEAHLSEVNAVHFGPNSSVLATGGADR
LILLWNVVGGRLKAKQTLEGAGGSITSVDFDPSGSQVLAATYNKAAQLWKVGEAQSKETL
SGHTDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTISVVSYCNDVVCGDHIIIS
GHNDQKIRFWDSRGPRCTQVIPVQGRVTSLSLSHDQLHLLSCSRDDTLKVIDLRVSNIRQ
VFRADGFKCGSDWTKAVFSPDRSYALAGSWDGALYIWDVDTGKLESSLRGPHCAAVNAVA
WCYSGSHVASVDQARKLVLWH
NT seq 1866 nt   +upstreamnt  +downstreamnt
atggcggggcccagcgaccccggcgcccctgtcgcctgctggaaacgccacatcgtgcgg
cagcttcgactccgggaccgcacgcagaaggccctcttcctggagctggtgccagcctat
aaccgtctcctagagaaggctgagctgctggcccggttctcagagacactgctgccagag
ccaaacagtgtcacgccagctacccaccagggcccctgggaggaggaggaggcggggcct
gactcagaccaagtcccatcaccagcagctctgagggtgaagtggcaagaggaggaggag
gggctccggctggagtgcggagagatggcctaccaggtggtggtgaagagcgcggccctg
ggcgccctggaatcgcagctggaggagcggcagagcaggctggcggctctagaggctcgc
gtggcacagctgcaggaggcgcgggcgaagaaggcgcggcaggtggacgcgcggcgcgcg
ctcaacgcggcgcagcaggcggcctacgaggcgctgcgcgcgcacgccgggcgccaggag
gcggcgctgcgcaggctccaggaggaggcgcgcgacctgctcgagcggctggtgcagcgc
aaggcgcgcgccgccgccgagcgcaatctgcgcaacgagcgtcgcgagagggccaagcag
gcgcgggtgtccctggagctgaagaaggcagccaagcggacagtgagcatcagcgagagc
ccagacgcactggacgatgggatcacagaggaagcagaacctccggccctggctgcggag
cccaagtccctggagagtgaggctattgagaagtggaggaggccattcaggtctgcctcc
gccacctccctgacggtgttccgctgtgtggatgtggtgaaggggctcctggatttcaag
aagaggaggggccactcgatcgggggcgcccccgagcagcgataccagagcatccccgtg
tgcctggccgcccgactgcccaccagagctcaggacgtgctggaagcccacctctctgag
gtcaatgctgttcattttggccccaacagcagcgtcctggccaccggaggggcagaccgc
ctcatcctcctctggaatgtcgtgggaggtcgcctgaaggctaagcagaccctggaagga
gctggcggcagcatcaccagtgtggactttgacccttcgggctcccaggtactggcagct
acttacaataaggccgcccagctctggaaggtgggggaggcacagtccaaggagacgctc
tccggacacacagataaggtgacggctgccaaattcaagctaacaaggcaccaggcggtg
actgggagccgggaccggactgtgaaggagtgggacctcggccgcgcctactgctccagg
accatcagtgtcgtgtcctactgtaacgacgtggtgtgtggggaccacatcatcataagc
ggccacaatgaccagaagatccggttctgggacagcagggggccccgctgcacccaggtc
atccccgtgcagggccgggtcacctccctcagcctcagccacgaccagctgcatctgctt
agctgctcccgagatgacaccctcaaagtcatcgacctgcgcgtcagcaacatccgccag
gtgttcagggctgatggcttcaagtgtggttccgactggaccaaagctgtgttcagccca
gacagaagctatgcactggcaggctcctgggatggagccctttacatctgggacgtggac
actgggaagctggagagcagcctccggggaccccactgtgctgctgtcaacgccgtggcc
tggtgctactccgggagccacgtagcgagcgtggaccaggccaggaagcttgtgctctgg
cactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

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