KEGG   Sus scrofa (pig): 100512072
Entry
100512072         CDS       T01009                                 
Symbol
USP4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4
  KO
K11835  ubiquitin carboxyl-terminal hydrolase 4/11 [EC:3.4.19.12]
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ssc01002]
    100512072 (USP4)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssc04121]
    100512072 (USP4)
Enzymes [BR:ssc01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     100512072 (USP4)
Peptidases and inhibitors [BR:ssc01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   100512072 (USP4)
Ubiquitin system [BR:ssc04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    100512072 (USP4)
SSDB
Motif
Pfam: UCH Ubiquitin_3 DUSP UCH_1 USP7_C2 USP7_ICP0_bdg
Other DBs
NCBI-GeneID: 100512072
NCBI-ProteinID: NP_001230117
Ensembl: ENSSSCG00000011382
UniProt: A0A8D1WTZ1 A0A287AEJ8
Position
13:complement(31844780..31904418)
AA seq 963 aa
MAEGGGCRERPDAETQKSELGALMRTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
TRLWNRYMSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTVPSRN
FTTSPKSSASPYSSVSASPIANGDSTNTSGMHSSGVSRGGSGFSASYNCQESPSSHVQPG
LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIK
QMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLEL
KDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKISVTFDPFCYLTLP
LPLKKDRVMEIFLVPADPHCRPTQYRVIVPLMGAVSDLCEALSRLSGVAAENMVVTDVYN
HRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSMDGSECITLPVYFRERKSRPSSTSTGAVL
YGQPLLVSVPKHKLTLEFLYQAVCERISRYIKQPLPDESGSSPLEPGACNGSRGSCEGED
EEEMEHQEEGREQLSETEGSGEDESGSDRGETSQKKLKDRPCPERLFTFSLVNSYGTADI
NSLATDGKLLKLNSRSTLAIDWDSETRNRYYDEQESEAYEKHVSMLQPQKKKKTAVALRD
CIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDT
VVEFPVRALNMSEFVCDLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDS
NVSLASEDQIVTKAAYVLFYQRRDDEFYKAPSLSFPGSSDGGTRPGSSQQGMGDDETCSM
DTN
NT seq 2892 nt   +upstreamnt  +downstreamnt
atggcggaaggcggaggctgccgtgaacgaccggatgcagagacccagaaatccgagctc
ggggccttaatgaggaccacgctgcaacgaggggcgcagtggtatcttattgacagccgg
tggttcaagcagtggaagaagtatgtgggcttcgacagctgggatatgtacaatgtgggt
gaacacaatctgtttcctggccccatagataactctggactcttttcagatcctgagagt
cagaccttgaaagaacatttaattgatgaattggactatgtattggtccccactgaggcc
tggaataagttactaaactggtatggctgtgtagaaggtcagcagcccattgtcagaaaa
gttgtagagcatggcctgtttgtcaagcactgcaaggtagaggtgtatttgctggaattg
aagctttgtgagaatagtgatcccaccaatgtgctgagttgccatttcagcaaggcagac
accatcgcaaccatcgagaaggaaatgcggaagctgttcaatatccctgcagagcgtgag
acacggctgtggaacagatacatgagcaacacctatgagcagttgagcaagctagacaac
actgtgcaggatgctgggctgtaccagggtcaggtgctagtaattgagccccaaaatgaa
gatggcacatggccaaggcagaccctgcagtcaaaatcaagcactgtgcctagcagaaat
tttactacctctccaaaatcatcagcaagtccctattcctcagtgtctgcctctcccatt
gcaaatggtgatagcactaacacctctggaatgcacagttccggtgtcagcaggggtgga
tctggcttctctgcttcgtataactgtcaggagtccccatcgtctcacgtacaacctggg
ctctgtggacttggaaacctggggaacacctgcttcatgaactctgctttgcagtgctta
agcaacactgcaccactgactgactactttctcaaagatgagtatgaagctgaaatcaac
agggacaaccctctgggaatgaaaggggaaattgcagaggcctatgcagagctcattaag
cagatgtggtctggaagggatgctcatgtggcacctcgaatgttcaaaacccaggtggga
cgttttgcccctcagttttctggctaccagcagcaagactctcaggagctcttagccttt
cttctagacggattgcatgaagatctgaaccgagtgaagaaaaaaccctacctggagctg
aaggatgccaatgggcggccagatgcggtggtggcaaaggaagcctgggagaatcatagg
ctaaggaatgactctgtgattgtggacacgttccatggcctcttcaaatctactttggtt
tgcccagagtgcgctaagatttctgtgacctttgacccattttgctatctaactctcccc
ctgcccttgaagaaagatcgagttatggagatcttcctggttcctgctgaccctcactgc
aggcctacccagtaccgcgtaattgtgccgctaatgggtgctgtatctgatctgtgcgag
gctctctccaggttgtctggcgttgctgcagaaaacatggtggtcacagatgtgtataat
caccggttccacaaaattttccaaatggatgaaggtttaaaccacatcatgcctcgggat
gatatttttgtgtacgaggtctgcagcacctccatggatggctctgaatgtatcacgctt
cctgtgtacttcagggagaggaagtccaggccgtcgagcacttccaccggggcggtgctg
tatgggcagcctctgttggtttctgtcccaaagcacaagctcaccctcgaatttttgtac
caggctgtttgtgagcgtatcagccgctatataaaacagcctttgcctgatgagtctggc
agctcgcccttggaaccgggggcctgcaatggctctaggggcagctgtgaaggagaagac
gaagaggaaatggagcatcaggaggaaggcagagagcagctttcagaaacagagggcagt
ggggaggatgaatcggggagtgaccgtggtgagacctcccaaaagaagctcaaagacaga
ccctgccctgaaaggctttttaccttcagtcttgtgaactcttatggcacagctgacata
aattcccttgcaactgatgggaagctacttaaactcaactctcggtccacactagccatc
gactgggatagtgagacccggaaccgttattatgatgagcaagaatctgaggcctatgag
aagcatgtcagcatgttgcagcctcaaaagaaaaagaagacagcagtggccctaagagac
tgcatcgagctcttcactaccatggagacccttggggagcacgacccctggtactgtccc
aactgtaagaagcatcaacaggccacaaagaagtttgacttgtggtccttgccgaagatc
ctggttgtccatctcaaacgtttctcctacaatagatactggagggataagcttgatacg
gttgtggaattcccagtcagagctctgaacatgtccgagtttgtctgtgacctgtcagca
aggccttatgtgtacgacctcattgccgtgtccaatcattacggagccatgggggttggc
cactatactgcatacgcgaagaacaaactgaatgggaaatggtattactttgatgatagc
aatgtgtccctggcctctgaggatcagatagtgacaaaagcagcttacgtgctattttac
cagcgtcgagatgatgagttttataaggcaccttcactcagttttcctggatcgtctgat
ggaggaacgagaccaggaagctcacagcaaggcatgggggatgatgagacttgcagcatg
gacaccaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (10)   
   UniProt (2)   
   RefSeq(pep) (8)   
DNA sequence (12)   
   RefSeq(nuc) (8)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

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