KEGG   Sus scrofa (pig): 100512118
Entry
100512118         CDS       T01009                                 
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X2
  KO
K14308  nuclear pore complex protein Nup54
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03013  Nucleocytoplasmic transport
ssc05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100512118 (NUP54)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    100512118 (NUP54)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100512118 (NUP54)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     100512118 (NUP54)
SSDB
Motif
Pfam: Nup54 Nup54_C XhlA
Other DBs
NCBI-GeneID: 100512118
NCBI-ProteinID: XP_003129166
Ensembl: ENSSSCG00000008979
UniProt: A0A8D0VFC3 A0A286ZTU0
Position
8:complement(71792153..71833180)
AA seq 510 aa
MAFNFAAPSGSSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPANTGTTGLFGSTQNKG
FGFGTGFGTTTGTSTGLGTGLGTGLGFGGFNTQQQQQQQQTTLGGLFSQPTQAPTQSNQL
INTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVG
YSCMPNNKDEDGLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQ
TEVVIYVVERSPNGTSRRVPATTLYAHFEQTIIKTQLQQLGVTLSMTRTELSPAQIKQLL
QNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISED
ISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTI
QCELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLKQQQEGLSHL
ISIIKDDLEDIKLVEHGLNETLHIRSGVFS
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggctttcaactttgcggctccctcgggcagctcaggtaccgctgcagccaccgcagcc
cccgcgggtgggtttggaggatttgggacaacatctacaacagcaggctctgcattcagc
ttttcagctccagctaacactggcactactggactctttggtagtactcagaacaaaggt
tttggatttggtactggttttggcacaacaactggaactagtactggtttaggtactggt
ttgggaactggacttggatttggaggatttaatacacagcagcagcagcaacaacaacaa
actacattaggtggtctcttcagtcagcctacacaagctcctacccagtccaatcaactg
ataaatactgcaagtgctctttctgctccaacactactgggagatgagagagatgctatt
ttggcgaaatggaatcaactacaggccttttggggaacaggaaaaggatatttcaacaat
aacattccaccagtggaattcacgcaagaaaatcctttttgccgatttaaggcagtaggt
tacagttgtatgcccaataataaagacgaagatggcctagtggttttagttttcaacaaa
aaggaaacggatattcgaagccagcaacagcagttggtagaatcattacataaagttttg
ggaggaaaccagacccttactgtaaatgtagagggaattaaaacattaccagatgatcag
acagaagttgtcatttatgttgttgagcgttctccaaatggtacctcaagaagagttcca
gctacaacactctatgcccattttgaacaaaccattataaaaacacaactgcagcagctt
ggtgtaaccctttctatgactagaacagaactttctcctgcacagatcaaacagctttta
cagaatcctcctgctggtgtcgatcctattatctgggaacaagccaaggtggacaaccct
gattctgaaaagttaattcctgtaccaatggtgggttttaaggaacttcttcgaagactg
aaggtccaagatcagatgactaagcagcatcaaaccagattagatatcatatctgaagat
attagtgaattacagaagaatcaaactacaactatggccaaaattgcacagtacaagagg
aaactcatggatctttcccacagaaccttacaggtcctaatcaaacaggaaattcagagg
aagagtggatatgccatccaagctgatgaagagcagttgcgagttcagctagatacaatt
cagtgtgaactaaatgcccccactcagtttaagggccgactcaatgaactgatgtcccaa
atcaggatgcagaatcattttggagcagtcagatctgaagaaagatattatatagatgca
gatctgttgcgagaaatcaagcagcatttgaaacaacaacaggaaggccttagccacttg
attagcatcataaaagatgacctagaagatatcaagttggtagaacacggattgaatgaa
accctccacatcagaagtggtgtcttcagttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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