KEGG   Sus scrofa (pig): 100512542
Entry
100512542         CDS       T01009                                 
Symbol
SOX4
Name
(RefSeq) transcription factor SOX-4
  KO
K23581  transcription factor SOX4 (SOX group C)
Organism
ssc  Sus scrofa (pig)
Pathway
ssc05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100512542 (SOX4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    100512542 (SOX4)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    100512542 (SOX4)
SSDB
Motif
Pfam: HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 100512542
NCBI-ProteinID: XP_013832921
Ensembl: ENSSSCG00000001081
UniProt: F1RUF9 A0A8D1M1V6
Position
7:16886834..16895488
AA seq 477 aa
MVQQTNNAENTEALLAGESSDSGAGLELGIASSPTPGSTASTGGKADDPSWCKTPSGHIK
RPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLRLKHM
ADYPDYKYRPRKKVKSGNANSSSSTAASSKPGEKGDKVGGSGGGGHGGGGGSSNAGGGGG
GASGGGGANSKPAQKKSCGSKVAGGAGGGVGKPHAKLILAGGGGGKTAAASSASLAAEQA
GAAALLPLGAAAAADHHSLYKARTPGASASASAAASASTSLGAPGKHLTEKKVKRVYLFG
GLGASSSPVGGVGAGADPSDPLGLYEEGGAGCSPDGPSLSGRSSAASSPTAGRSPADHRS
YASLRAASPAPSSAPSHASSSASSHSSSSSASSSSGSSSSDDEFEDDLLDLNPSSNFESM
SLGSFSSSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY
NT seq 1434 nt   +upstreamnt  +downstreamnt
atggtgcagcaaaccaacaacgccgagaacacggaagcgctgctggccggcgagagctcg
gactcgggcgccggcctggagctgggcatcgcctcctcccccacgcccggctccacagcc
tccacgggcggcaaggccgacgacccgagctggtgcaagacgccaagtgggcacatcaag
cggcccatgaacgccttcatggtgtggtcgcagatcgagcggcgcaagatcatggaacag
tcgcccgacatgcacaacgccgagatctccaagcggctgggcaaacgctggaagctgctc
aaagacagcgacaagatccctttcattcgggaggcggagcggctgcgcctcaagcacatg
gctgactaccccgactacaagtaccggcccaggaagaaggtgaagtccggcaacgccaac
tccagctcctccaccgccgcctcctcgaagccgggggagaagggtgacaaggtcggtggc
agcggcgggggcggccacgggggcggcggcgggagcagcaacgcggggggaggaggcggc
ggcgcgagcggcggcggcggcgccaactccaaacccgcgcagaaaaagagctgcggctcc
aaagtggcgggcggcgcgggcggcggggtcggcaagccccacgccaagcttatcctggcg
ggcggcggcggcgggaaaacggcggccgcctcctctgcctccttagcggcggagcaggcg
ggggccgccgccctgctgcccctgggcgccgccgcggccgccgaccaccactcgctgtac
aaggcgcggactcccggcgcctcggcctcggcctcggcggcggcctcggcctcaaccagc
ctcggggccccgggtaaacacctgaccgagaagaaggtaaagcgcgtctacctgttcggc
ggcctgggcgcgtcgtcctcgccggtcggcggcgtgggcgctggcgccgaccccagcgac
cccctgggcctgtacgaggaagggggcgccggctgctcgcccgacgggccgagcctgagc
ggccgcagcagcgccgcctcgtcgcccaccgccggccgctcgcccgccgaccaccgtagc
tacgccagcctgcgcgccgcctcgcccgccccgtccagcgcgccctcgcacgcgtcctcc
tcggcctcgtcccactcctcctcctcctccgcctcctcctcctcgggctcgtcgtcctcc
gacgacgagttcgaagacgacctgctcgacctgaaccccagctcaaactttgagagcatg
tccctgggcagcttcagctcgtcgtcggcgctggaccgggacctggattttaacttcgag
cccggctccggctcgcacttcgagttcccggactactgcacgcccgaggtgagcgaaatg
atctcgggagactggctcgagtccagcatctccaacctggtcttcacctactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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