KEGG   Sus scrofa (pig): 100513081
Entry
100513081         CDS       T01009                                 
Symbol
LMX1A
Name
(RefSeq) LIM homeobox transcription factor 1-alpha isoform X1
  KO
K09371  LIM homeobox transcription factor 1
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    100513081 (LMX1A)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Helix-turn-helix
   Homeo domain LIM
    100513081 (LMX1A)
SSDB
Motif
Pfam: LIM Homeodomain Homeobox_KN
Other DBs
NCBI-GeneID: 100513081
NCBI-ProteinID: XP_013843531
UniProt: A0A4X1VL36 F1S229
Position
4:85403287..85570738
AA seq 592 aa
MPGRSKRLRGAPGGGREVGRAARLGREHRGPSTGRAPSPLPAHPTPSLCRASSAAAPVRS
GRIRPSQAGPDSHPGPWASAFPLAWEKHPALPSSRGATRAGRTSREGRPPAATSRPGPSA
PRSGARGRRSLRLPPGRAGAGGGCSGCSLEGLRLPRPKLPAAPGNFIRLLPRGASSPIRV
RRLRAPSPRRHRRQKRRFLSSTRFSQPGPNMLDGLKMEENFQSAIETSASFSSLLGRAVS
PKSVCEGCQRVISDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKKLYCKYDYEKLF
AVKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEK
ERELLSLVSPAASDSGKSDDEESLCKSAHGAGKGAPEDGKDHKRPKRPRTILTTQQRRAF
KASFEVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLARRQQQQQQDQQNTQRL
NSAQTNGGGSVGMEGIMNPYTALPTPQQLLAIEQSVYNSDPFRQGLTPPQMPGDHMHPYG
AEPLFHDLDSDDTSLSNLGDCFLATSEAGPLQSRVGNPIDHLYSMQNSYFTS
NT seq 1779 nt   +upstreamnt  +downstreamnt
atgcccgggaggtcgaagcggctgaggggcgcacccggcggtggccgtgaggtgggccgc
gccgccaggctgggaagggagcaccgcgggccctccacgggacgcgctcccagccccctc
cctgcgcaccccaccccttccctctgccgcgcaagcagcgccgcggcccccgtcagaagc
ggccggatccgccccagccaagcagggcccgactcgcacccaggaccctgggcctccgcc
ttccctctagcctgggagaagcatccggccctcccctcctcccgaggagcgactcgggcg
ggcaggacgtcccgagaaggccgcccgcccgcggccacgtcccggcccggcccgagcgcg
ccgaggagcggagccaggggccggcgctcgctccggctccctcccgggcgcgccggagcc
gggggcggctgctccggctgcagcctcgagggcctacgcctcccccggcccaagcttccc
gcggctcccggcaacttcattcgtctcctgccacggggagcaagctcgcccatcagagtg
cggcggctgcgggcgccgagtcccagacggcaccgacgccaaaagcgtcgtttcctctca
tctaccaggttctcacagcccggcccgaacatgctggacggcttgaagatggaggagaac
ttccaaagtgccatcgagacgtcggcctctttttcctcgctgctgggcagagctgtgagc
cccaagtctgtctgcgagggctgtcaacgggtcatctcggacaggtttctgctgcggctc
aacgacagcttctggcatgagcagtgcgttcagtgtgcctcctgcaaagagcccctggag
accacctgcttctaccgggacaagaagctctactgcaagtatgactatgagaagctgttt
gctgtcaaatgtgggggctgctttgaggccattgcacccaacgagtttgttatgcgggcc
cagaagagtgtgtaccacctgagctgcttctgttgctgtgtctgtgagcggcagctgcag
aagggtgatgagtttgtcctgaaggaggggcagctgctctgcaaaggggactatgagaag
gagcgggagctgctcagcctggtgagcccggcagcatcagactcaggcaaaagtgatgat
gaagaaagtctttgcaagtcagcccatggggcagggaaaggagcccctgaggatggcaag
gaccataagcgccccaaacgtcccagaaccatcttgacaacccaacagaggagagcattc
aaggcttcttttgaagtatcctccaagccatgcaggaaggtgagggagaccctggctgca
gagacagggctgagcgtccgtgttgttcaggtgtggttccagaaccagagagctaagatg
aagaagctggctcgacggcagcaacagcagcaacaagatcagcagaacacacagaggctg
aattctgctcagacaaatggtggcgggagcgttgggatggaagggatcatgaacccctac
acggctctgcctaccccacagcagctcctggccattgagcagagcgtctacaactcagat
cccttccgacagggtctcaccccgccccagatgcctggagaccacatgcacccctatggt
gctgagccccttttccatgacctggatagtgatgacacctccctcagtaacctgggtgac
tgtttcctagcaacgtcggaagctgggcccctgcagtccagagtgggaaaccccattgac
cacctgtactccatgcagaattcttacttcacctcttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (73)   
   KEGG ORTHOLOGY (1)   
   RefGene (69)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (85)   

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