KEGG   Sus scrofa (pig): 100515097
Entry
100515097         CDS       T01009                                 
Symbol
SUPT4H1
Name
(RefSeq) transcription elongation factor SPT4
  KO
K15171  transcription elongation factor SPT4
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100515097 (SUPT4H1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    100515097 (SUPT4H1)
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100515097 (SUPT4H1)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     100515097 (SUPT4H1)
  RNA polymerase I system
     100515097 (SUPT4H1)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     100515097 (SUPT4H1)
SSDB
Motif
Pfam: Spt4
Other DBs
NCBI-GeneID: 100515097
NCBI-ProteinID: XP_003131694
Ensembl: ENSSSCG00000017639
Vega: OTTSUSG00000003647
UniProt: A0A480VIE8 A0A4X1SL69
Position
12:complement(34622775..34629681)
AA seq 117 aa
MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI
IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT
NT seq 354 nt   +upstreamnt  +downstreamnt
atggctctggagacagtgccgaaggacctgcggcatctgcgcgcttgtttgctgtgttcg
ctggtcaagactatagaccagtttgaatatgatggttgtgacaattgtgatgcatacctt
cagatgaaaggtaaccgagagatggtatatgactgcaccagctcttcctttgatggaatc
attgcaatgatgagtccagaggacagctgggtctccaagtggcagcgagtcagtaacttt
aagccgggggtatatgcagtgtcagtcacaggtcgccttccccaaggaatcgtgcgggag
ctgaaaagtcgaggagtggcctacaaatccagagacacagctataaagacctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (21)   

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