KEGG   Sus scrofa (pig): 100516128
Entry
100516128         CDS       T01009                                 
Symbol
ATG13
Name
(RefSeq) autophagy-related protein 13 isoform X1
  KO
K08331  autophagy-related protein 13
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04136  Autophagy - other
ssc04140  Autophagy - animal
ssc04211  Longevity regulating pathway
ssc05010  Alzheimer disease
ssc05014  Amyotrophic lateral sclerosis
ssc05016  Huntington disease
ssc05017  Spinocerebellar ataxia
ssc05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100516128 (ATG13)
   04136 Autophagy - other
    100516128 (ATG13)
 09150 Organismal Systems
  09149 Aging
   04211 Longevity regulating pathway
    100516128 (ATG13)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    100516128 (ATG13)
   05014 Amyotrophic lateral sclerosis
    100516128 (ATG13)
   05016 Huntington disease
    100516128 (ATG13)
   05017 Spinocerebellar ataxia
    100516128 (ATG13)
   05022 Pathways of neurodegeneration - multiple diseases
    100516128 (ATG13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100516128 (ATG13)
   03029 Mitochondrial biogenesis [BR:ssc03029]
    100516128 (ATG13)
Membrane trafficking [BR:ssc04131]
 Autophagy
  Autophagosome formation proteins
   ULK complex
    100516128 (ATG13)
   Atg1 complex
    100516128 (ATG13)
Mitochondrial biogenesis [BR:ssc03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Parkin-independent mechanism factors
    100516128 (ATG13)
SSDB
Motif
Pfam: ATG13
Other DBs
NCBI-GeneID: 100516128
NCBI-ProteinID: XP_003122874
Ensembl: ENSSSCG00000013257
UniProt: A0A4X1VSK7 F1SIA3
Position
2:complement(15856859..15916122)
AA seq 550 aa
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYAVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRHFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTTGEDTGV
TYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSS
RLSYQPAALGVGSADLAYPVVFAAGLNATHPHQLMVPGKEGGVPLAPNQPAHGAQADQER
LATYTPSDGAHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEDADPMVNPPDSPETTSPLQGSLHSDGSSGGSSGNTQDDFVMI
DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
EFDAFVETLQ
NT seq 1653 nt   +upstreamnt  +downstreamnt
atggaaactgatctcaattcccaggacagaaaggacctggacaagttcattaagtttttt
gcccttaagactgtccaagtgattgtccaggctcgactcggtgaaaagatttgtactcgt
tcatcttcatccccaacgggttcagattggttcaatttagcaatcaaagacatcccagag
gttacacatgaagcaaagaaggcactggcagggcagctgcctgctgtcgggagatctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagttagaaatctggtgt
ctggaaatgaacgaaaagtgtgataaggagatcaaggtttcctatgcagtgtacaacaga
ctgtcattgcttctgaagtctctccttgctataaccagggtgacaccagcttacagactc
tccagaaaacaagggcatgaatatgtcatattgtacagaatatatttcggggaagttcag
ctgaatggcttaggagaaggtttccagacagttcgtgttgggacagtgggcacccctgta
ggcaccatcactctttcctgtgcttatcgaattaacttggcattcatgtccaccaggcac
tttgagaggaccccacctatcatggggattatcattgatcactttgtggaccgtccctat
cccagctcctcgcccatgcatccctgcaattacagaaccaccggtgaggacacgggagta
acatatccttctgtggaagattctcaagaagtgtgtaccacctccttttccacttcccct
ccttcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtg
acggacaccttgagggtccccatggcaggactggctttttcccatcaactctcaagctct
cgcctttcctatcagcctgctgccctgggcgttggatcagctgacctggcttatccagta
gtgtttgctgctggcttaaatgccacacaccctcaccagctaatggttcctggaaaggaa
ggtggggtaccccttgctcccaaccagcctgcccatggtgcccaggcagaccaggagaga
ttggcaacctacaccccttctgatggggcccactgtgctgccacaccttccagcagtgag
gacactgaaactgtctcaaacagcagtgaggggcgggcctccccccatgacgttctggag
accatctttgtccggaaagtgggggcttttgtcaacaaacccatcaaccaggtgaccctg
accagtttggacataccctttgccatgtttgctcccaagaatttggagctagaggatgct
gatcccatggtgaatcctccagattccccagagactacatctcctctccagggcagcctg
cactctgatggctccagcgggggcagcagtggcaatacccaggatgactttgttatgatc
gactttaaaccggctttttctaaagatgacattcttccaatggacttggggaccttctat
cgtgaatttcagaaccctcctcagctgagcagcctctccatagatattggggcacagtcc
atggctgaggacttggactcactaccagagaagctggccgtgcacgagaagaatgtccga
gaattcgatgcctttgtagaaaccctgcagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (8)   
   KEGG PATHWAY (8)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   RefSeq(pep) (11)   
DNA sequence (17)   
   RefSeq(nuc) (11)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (51)   

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