KEGG   Sus scrofa (pig): 100516183
Entry
100516183         CDS       T01009                                 
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X2
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100516183 (CNOT6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100516183 (CNOT6)
Enzymes [BR:ssc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     100516183 (CNOT6)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100516183 (CNOT6)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     100516183 (CNOT6)
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 LRR_6
Other DBs
NCBI-GeneID: 100516183
NCBI-ProteinID: XP_003123675
Ensembl: ENSSSCG00000014009
UniProt: A0A8D1XGJ1 A0A8D0SG00
Position
2:complement(78131236..78202518)
AA seq 552 aa
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALYLSD
NSLSRIPSDIAKLHNLVHLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYLEPDGTRRLLNYLLDNLAVSTEQPPPRSWIMLQEPDRTRP
TALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETEQ
YYSFFLVELKDRGYSGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQL
AMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEISSGKPHLGTEKQLILVANAHMHWD
PEYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCADLNSLPDSGVVEYL
STGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYESGLMPYTNYTFD
FKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLELLLPFL
PQVNGIHLPGRR
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgcccaaagaaaaatacgagcctcctgaccctcggaggatgtacacaattatgtcctcc
gaagaagcagcaaatggaaagaaatcacattgggcagagcttgaaataagtggaaaagta
agaagcttaagctcatctttgtggtcactgactcacttgacagctttgtatctaagtgac
aattccctgtcccgcattccttcagacattgccaagcttcacaatctggtgcatctggat
ctatcctctaataaaatccggagtttaccagcagaactcggaaacatggtatcactcagg
gaactccatttaaataacaacctgttacgagttctaccttttgagctgggaaaactgttt
cagttgcagactttaggcctgaaaggaaatccacttacccaggatattttgaacctctat
ctggaaccagatggaacaagaaggctactgaactatttgcttgataatttggcagtttca
acagaacaaccacctccaagatcttggattatgttacaagaaccagacagaactcggcca
acggccttgttttctgtcatgtgctataatgttctttgtgataaatatgcgacccggcag
ttatatggctactgtccatcatgggcactaaattgggactacaggaaaaaggccattatt
caagaaatcttgagttgtaatgctgatattataagtcttcaggaggttgaaacagaacag
tattacagtttttttctggtagaactgaaagaccgtggctatagtggattttttagtcct
aaatctagagctaggacaatgtcagaacaagaaagaaaacatgttgatggctgtgcaata
ttcttcaagacagaaaaatttactttggttcagaaacacactgttgaatttaatcagcta
gcgatggcaaattcagaagggtctgaagctatgctgaacagagtcatgacaaaagataac
attggagttgctgtactgctagaacttcgaaaggaattgattgaaatatcatctggaaag
ccacatcttggaacagaaaaacaacttattcttgtggctaatgctcatatgcattgggac
cctgaatactctgatgtgaagttggttcaaacgatgatgttcctctcagaagtgaagaac
attattgacaaagcttcaagaagccttcagtccagtgtattgggagaatttggaactatt
ccactggtgttgtgtgcagatcttaattctttgccggactctggtgttgtagaatatttg
agcactggtggagtagaaacaaatcataaagacttcaaggaactgagatataatgaaagt
cttacaaacttcagctgtaatgggaaaaatgggacaaccaatggaaggatcactcacggt
ttcaagttaaagagtgcctatgagagtggcctgatgccttacacaaattacacatttgat
tttaagggtataattgactacatcttctattctaaacctcagctgaacactttaggcatc
ctgggacctctggaccaccattggctagttgagaataatatcagcggctgcccacaccca
ctcatcccctccgaccacttctcactttttgcacaactggagctcttactgcctttcctg
ccccaagttaacggcattcatcttcctggcaggaggtag

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