KEGG   Sus scrofa (pig): 100516706
Entry
100516706         CDS       T01009                                 
Symbol
GABRA1
Name
(RefSeq) LOW QUALITY PROTEIN: gamma-aminobutyric acid receptor subunit alpha-1
  KO
K05175  gamma-aminobutyric acid receptor subunit alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04080  Neuroactive ligand-receptor interaction
ssc04723  Retrograde endocannabinoid signaling
ssc04727  GABAergic synapse
ssc04742  Taste transduction
ssc05032  Morphine addiction
ssc05033  Nicotine addiction
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04080 Neuroactive ligand-receptor interaction
    100516706 (GABRA1)
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    100516706 (GABRA1)
   04723 Retrograde endocannabinoid signaling
    100516706 (GABRA1)
  09157 Sensory system
   04742 Taste transduction
    100516706 (GABRA1)
 09160 Human Diseases
  09165 Substance dependence
   05032 Morphine addiction
    100516706 (GABRA1)
   05033 Nicotine addiction
    100516706 (GABRA1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:ssc04040]
    100516706 (GABRA1)
Ion channels [BR:ssc04040]
 Ligand-gated channels
  GABA-A
   100516706 (GABRA1)
SSDB
Motif
Pfam: Neur_chan_LBD Neur_chan_memb
Other DBs
NCBI-GeneID: 100516706
NCBI-ProteinID: XP_003134137
Ensembl: ENSSSCG00000017026
UniProt: A0A8D0RLN6 A0A480NP21
Position
16:complement(61656583..61723428)
AA seq 456 aa
MKKSLGLSDYLWAWTLLLSSLNGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPG
LGERVTEVKTDIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASK
IWTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHAC
PLKFGSYAYTRAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVM
TTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKPKKVKDP
LIKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPXPKKTFNSVSKID
RLSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgaagaaaagtctgggtctctctgactacctttgggcctggaccctcctcctgagctca
ctgaatggaagaagctatggacaaccctcattacaggatgaacttaaagacaacaccact
gtcttcaccaggattttggaccgactcctggatggttatgacaatcgcctaagaccagga
ttaggagagcgtgtaaccgaagtgaagaccgatatcttcgtcaccagcttcggacccgtt
tcagaccatgatatggaatatacaatagatgtatttttccgtcaaagctggaaggatgaa
aggttaaaatttaaaggacccatgacagtactccggttaaataacctaatggcaagtaaa
atctggactccggatacctttttccacaatgggaagaagtcagtggcacacaacatgacc
atgcccaacaagctcctgcggatcaccgaggatgggaccttgttgtacaccatgaggctg
acagtgagagctgaatgtccgatgcatctggaagatttccctatggatgcccatgcctgc
ccactaaaatttggaagctatgcttatacaagagcagaagttgtttatgagtggaccaga
gagccagcacgctcagtggttgtagcagaagatgggtcacgcctaaatcagtatgatctt
cttggacaaacagtcgactctggaattgttcagtctagtacaggagaatacgttgttatg
accactcatttccacttgaagagaaagattggctattttgttattcaaacatacctgcct
tgcataatgacggttattctctctcaagtctcattctggctgaacagagagtctgtacca
gcaaggactgtctttggagtaacaacggtgctcaccatgacaacgttgagtatcagtgcc
agaaattccctccctaaggtggcttatgcaactgcaatggattggtttatcgcagtgtgc
tatgcctttgtattctcagctctgatcgagtttgccacagtaaactatttcaccaagaga
ggttatgcatgggatggcaaaagtgtggttccagaaaagccaaagaaagtgaaggatcct
ctcattaagaaaaacaacacttatgctcctacagcaaccagctacacacctaatttggcc
aggggcgaccccggcttagccaccattgctaaaagtgcaaccatagaacccaaagaagtc
aagccggaaacaaaaccaccgnaaccgaagaaaacctttaacagtgtcagcaaaattgac
cggctgtcaagaatagccttcccattgctgtttggaatctttaacttggtctactgggct
acatatttaaacagggagcctcagctaaaggcccccaccccgcatcaatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (27)   

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