KEGG   Sus scrofa (pig): 100517049
Entry
100517049         CDS       T01009                                 
Symbol
VPS11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04140  Autophagy - animal
ssc04148  Efferocytosis
ssc05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100517049 (VPS11)
   04148 Efferocytosis
    100517049 (VPS11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    100517049 (VPS11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100517049 (VPS11)
Membrane trafficking [BR:ssc04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    100517049 (VPS11)
   Hops complex
    100517049 (VPS11)
SSDB
Motif
Pfam: VPS11_C Clathrin zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-rbx1 zf-C3H2C3 zf-RING_UBOX zf-RING_5 TPR_11 DLP_helical zf-RING_11 zf-HC5HC2H zf-C3HC4_3 zf-RING-like zf-ANAPC11 TSGP1 DUF5847
Other DBs
NCBI-GeneID: 100517049
NCBI-ProteinID: XP_003129971
Ensembl: ENSSSCG00000015107
UniProt: F1SAH7 A0A4X1SIU4
Position
9:46285718..46297465
AA seq 941 aa
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGPAPASAPAASKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
ILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDMQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTS
RDSQSSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
AESNMKRYGKTLMHHIPEQTTQLLKGLCTNYQPSLEGRGDREAPGCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEEDPQVKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQEPSLW
EQALSYFARKEEDCKEYVAAVLKHIESKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPPARLTSSLEAGLQRDLLMHSRRGT
NT seq 2826 nt   +upstreamnt  +downstreamnt
atggcggcctacctgcagtggcggcgcttcgttttcttcgacaaggagctggtgaaagag
ccgctgggcaatgatggagctgctcccgggcccgcacctgcctctgcacctgctgcttcc
aagttcctttgcctccctcctggcatcactgtctgcgactcaggccgagggagcctagtc
tttggagatatggaaggccagatctggttcttgccccgctccttacagcttacgggtttc
caggcctacaaattacgggtgacacacctgtaccaactgaaacagcacaatattttggca
tctgttggtgaggatgaagagggcatcaaccccttggtaaagatctggaacctggagaag
agagatggtggcaatccactctgcactcggatcttccctgccattccagggacagagcca
actgtcgtgtcttgtttgactgtccatgaaaatctcaactttatggccattggttttaca
gatggcagtgttacattgaacaaaggggacatcacccgggaccggcatagcaagacccag
attttgcacaagggcaactatcctgttacgggactggcctttcgccaagcaggaaagacc
actcacttgtttgttgtgacaaccgagaatgttcagtcctacatagtttctggaaaggac
taccctcgtgtggagttggacacccatggttgtggcctgcgctgctcagctctaagcgac
ccttctcaggacatgcagttcatagtggcgggggatgagtgtgtctacttgtaccagccg
gatgaacgtgggccctgcttcgcctttgagggccataaactcattgctcactggtttaga
ggctaccttgtcattgtctcccgtgatcggaaagtttctcccaagtcggagtttaccagc
agggattcccagagctccgacaagcagattctcaacatctatgacctgtgcaacaagttc
atagcctacagcgccgtctttgaggatgtagtggatgtgcttgccgagtggggctccctg
tacgtgctgacgcgggatgggcgggtccacgcactgcaggagaaggacacacagaccaaa
ctggagatgctgtttaagaagaatctgtttgagatggcgatcaacctggccaagagccag
catctggacagtgatgggttggcccagatcttcatgcagtatggggaccacctctacagc
aagggcaaccatgatggggctgtccagcagtatatccgaaccattggaaagttggagcca
tcctatgtgatccgcaagtttctggatgcccagcgcatccacaacctgacagcctacctg
cagaccctgcaccggcagtccctggccaatgccgaccacaccacccttctgctcaactgc
tacaccaagctcaaggacagctcgaagctggaggagttcatcaagacaaagagtgagagc
gaggtccactttgatgtggagacagccatcaaggttctccggcaggccggctactactcc
cacgccctctacttggctgagaaccacgcacatcacgagtggtacttgaagatccagcta
gaggacatcaagaattatcaggaagcccttcggtacatcggaaagctgccttttgagcag
gcagagagcaacatgaaacgctatggcaagaccctcatgcaccatataccagagcagacc
acccagttgctgaaaggactctgcaccaactatcagcccagccttgaaggccgaggcgat
agggaggctcccggctgcagggccaactcagaggagttcatccccatctttgccaacaac
cctcgggagttgaaagctttcctagagcacatgagtgaggtacagcctgactccccacag
ggcatctacgacacactccttgaactgcgactccagaactgggcccacgaggaagatccg
caggtcaaagagaagcttcacgcggaggccatctctctcctgaagagtggtcgcttctgt
gacgtctttgacaaagccctggtcctctgccagatgcacgacttccaggatggggtcctt
tacctctatgagcaggggaaactgttccagcagatcatgcactaccacatgcagcacgag
cagtaccggcaggtgatcgccgtgtgcgagcgccacggggagcaggagccctccctgtgg
gagcaggcgctcagctacttcgcccgcaaggaggaggactgcaaggagtatgtggcggcc
gtgctcaagcacatcgagagcaagaatctcatgccaccccttctagtggtgcagaccttg
gcccacaattccacagccaccctgtctgtcattcgggactacctggtccaaaagctgcag
aaacagagccagcaaatcgcccaggatgagctccgggtgcggcgctaccgagaggagacc
acccgcatccgccaggagatccaggagctgaaggcaagtccaaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagttgccctctgtccactttctctgcggccac
tccttccaccagcactgctttgagagttactcggaaagtgatgccgactgccccacctgc
ctccctgaaaaccgcaaggtcatggatatgatccgggctcaggaacagaagcgagatctc
cacgatcaattccagcaccagctcaagtgctccaatgacagcttctctgtgattgccgat
tactttggcagaggtgttttcaacaaattgactctgctgaccgacccacccccagcccgg
ctgacttcgagcctggaggccggactgcagcgggacttgctcatgcactccagaaggggc
acctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (44)   

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