KEGG   Sus scrofa (pig): 100517711
Entry
100517711         CDS       T01009                                 
Symbol
RFX5
Name
(RefSeq) DNA-binding protein RFX5 isoform X1
  KO
K08061  regulatory factor X 5
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04612  Antigen processing and presentation
ssc05152  Tuberculosis
ssc05340  Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    100517711 (RFX5)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    100517711 (RFX5)
  09163 Immune disease
   05340 Primary immunodeficiency
    100517711 (RFX5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    100517711 (RFX5)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Other basic domains
   RF-X
    100517711 (RFX5)
SSDB
Motif
Pfam: RFX5_DNA_bdg RFX5_N RFX_DNA_binding Pox_D5
Other DBs
NCBI-GeneID: 100517711
NCBI-ProteinID: XP_003125814
Ensembl: ENSSSCG00000006625
UniProt: A0A8D0XPL0 F1ST00
Position
4:97901955..97913283
AA seq 668 aa
MIERAVRVSRQIGAVPAIQKKENKATHEPAGPGPWGWAEVKVATSPHARMAEDEPDAKSP
KTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDNDKLYLYLQLPSG
PSTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLS
TANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPE
VTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARSAHAHVLKAMGL
AEEDEHAPRERSSKSKNGVENLEGGAHKRPERQAQPPKELEARAGAGPPARGERKKSVVE
TPVPAPSNPHVNALVARLPLLLPRAPPSPIPPIRVSPSILAPKLSSGTLKMATLPLPSRG
GGPQAAVPIFNMILPTVPALPGPGPGPGPGPGPGPGQAPPGGLTQPRGTENREVSIGGDP
GPHDKGVKRTAEVPVSEASGQDPPAKATKQDVEDTGSDAKRKRGRPRKKSGGSRERNSTP
DKSADAVDAAQPSRLPPETWASGGESNSERPGLGGEAEKGVLAQGQEGGAVSRGGRGPSS
RHAKETEDKIPPVAPKVSVIRGSRSQKEALHLVKGEVDTAAQGNKDLKGHVLQSSLPLER
KDPKATPP
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgatagagcgggcagtacgagtatctaggcagatcggggctgttccagccattcagaaa
aaagaaaataaagcaacgcacgagcccgctgggccaggaccgtggggctgggctgaagtg
aaggtggctacgagccctcatgccaggatggcagaagatgaacctgatgctaaaagccca
aagacagggggaagggccccctcaggtagtgccgaggcaggggaacccaccacccttctt
cagaggctccgaggtaccatttccaaggccgtgcagaacaaagtagagggaatcctgcaa
gatgtacagaaattctcagacaacgacaagctgtatctctaccttcagctcccctcaggg
cccagtactggggacaaaagctcagagccaagcacactcagcaatgaggagtacatgtat
gcttacaggtggatccgcaaccatctagaagagcatacggacacctgtctgccgaaacaa
agtgtttatgatgcctatcggaagtactgtgaaagccttgcctgctgccgcccactcagc
acagccaactttggcaaaatcatcagagagatcttccctgacatcaaggcgcgaaggctt
ggtggccggggccagtccaaatattgctacagtggcatacgaaggaagaccttggtatct
atgccacccttgcccggacttgacctaaagggctctgagagtccagaaatgggcccagaa
gtaaccccagcacctcgggatgagctggtcgaagcagcctgtgccctgacctgtgactgg
gcagaacggatcctgaaacggtccttcagttccattgtcgaggtcgcccgcttcctgctg
cagcagcatcttatctctgcccgatctgcacatgcccatgtgctcaaggccatggggctt
gctgaagaggacgagcatgcccctcgggagcggtcgtctaaatccaagaatggcgtagag
aacctggaaggtggagcccacaagagaccagagagacaggcccagcctcctaaggagctg
gaagcccgggctggggctggccccccagcacgtggagagcggaagaagagtgtagtagag
accccggtgccagcacccagtaaccctcacgttaatgccctagtggcccggctgcctctg
ctcctcccccgggcccctccctcacctattccaccaatccgagtctctccatccattctg
gcccccaagctttcttcaggcactctgaaaatggctacactgcctcttcccagtaggggt
ggtggaccccaagcagctgtgcccatctttaacatgatcttaccaactgttcctgctttg
cctggacctggacccggacccggacctggccccgggcctgggcctggtcaagctccacct
ggggggctcactcagccgaggggcacagagaacagggaagtgagcataggtggtgacccg
ggaccccatgacaagggtgtcaagaggacagctgaagtacctgtgagtgaggccagtggg
caggacccaccagccaaagcaacaaagcaggatgtagaggatacaggaagtgacgccaaa
agaaaacgggggcgccctcgaaaaaaatcaggtggaagtagggaaaggaactctacccct
gacaagtcagcagatgccgtggacgctgcccagccctcaaggttaccaccggagacgtgg
gcctctggaggggaaagcaattcagagaggccagggctagggggagaggctgagaagggg
gtgcttgcccaaggtcaggagggtggtgctgtttcccgaggaggaaggggccccagttcc
cggcatgccaaagaaacagaagataaaattcctcctgtcgccccgaaagtgagtgttatc
aggggcagtagaagccaaaaggaggctcttcatttggttaagggagaggtagacacggcg
gcacagggtaataaagacttaaagggacacgtgcttcaaagctccttacccctggagcgg
aaagaccccaaagccacacccccgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system