KEGG   Sus scrofa (pig): 100519770
Entry
100519770         CDS       T01009                                 
Symbol
SDC1
Name
(RefSeq) syndecan-1 precursor
  KO
K06257  syndecan 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04512  ECM-receptor interaction
ssc04514  Cell adhesion molecules
ssc04820  Cytoskeleton in muscle cells
ssc05144  Malaria
ssc05205  Proteoglycans in cancer
ssc05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100519770 (SDC1)
   04514 Cell adhesion molecules
    100519770 (SDC1)
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100519770 (SDC1)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    100519770 (SDC1)
  09174 Infectious disease: parasitic
   05144 Malaria
    100519770 (SDC1)
  09166 Cardiovascular disease
   05418 Fluid shear stress and atherosclerosis
    100519770 (SDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100519770 (SDC1)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ssc04090]
    100519770 (SDC1)
   00535 Proteoglycans [BR:ssc00535]
    100519770 (SDC1)
Membrane trafficking [BR:ssc04131]
 Exocytosis
  Calcium ion-dependent exocytosis
   Acrosomal exocytosis proteins
    100519770 (SDC1)
CD molecules [BR:ssc04090]
 Proteins
  100519770 (SDC1)
Proteoglycans [BR:ssc00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   100519770 (SDC1)
SSDB
Motif
Pfam: Syndecan Romo1 Glycophorin_A
Other DBs
NCBI-GeneID: 100519770
NCBI-ProteinID: NP_001230119
Ensembl: ENSSSCG00000008601
Vega: OTTSUSG00000002423
UniProt: K7GNF5 A0A4X1U4Q2
Position
3:117987585..118011886
AA seq 309 aa
MRRAAFWLWLCALALRLQPALLETVATNVPPEDQDGSGDDSDNFSGSGAGALPDVTLSQQ
TPSTWKDTGLLTTMPTAPEPTSPDTVATSTSVLPAGERPGRGRAVLLDLDPGLTAQEKEA
THSPSETTQHPTTHRASTAGATTAQVPATSHPHRDVPPDHPETSAPAGHGQLDPHTPGVG
DGGPATTEKAAEGEASTQLPVGEGSGEPDFTFDVSGENTAGDALDPDQRNEPPVDQGTTG
ASQSLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQK
PSRQEEFYA
NT seq 930 nt   +upstreamnt  +downstreamnt
atgaggcgcgcggcgttttggctctggctctgcgcgctggcgctgcgcctgcagccggcc
ctcctggaaaccgtggccacaaatgtgccccctgaagatcaggatggctctggggatgac
tctgacaacttctctggctcgggcgcaggtgctctgccagatgtcactctgtcacagcag
accccctccacctggaaggacacggggctcctgacgaccatgcccacggctccagagccc
accagcccagataccgttgccacctccacctctgtcctgccggctggcgagcggcctggg
aggggaagggcagtgctcctggacttggatcctggcctcactgcccaggagaaagaggcc
acccactcacccagtgagaccacgcagcacccaaccacccaccgggcatcaactgctgga
gccaccacggcccaggtgcccgccacctcccatccccacagggatgtgccgcctgaccac
cctgagacctcggctcccgcaggtcatggccagcttgaccctcacactcctggtgtgggg
gacggaggtcctgccaccactgagaaggctgctgagggcgaagcctccacccagcttccc
gtgggagagggctctggggagccggacttcacctttgacgtgtccggggagaacacagcc
ggggacgccctggatccggaccagcggaatgagccgcccgtggatcaggggaccacgggg
gcctcacagagcctcctggataggaaggaagtgctgggaggggtcatcgcgggcggcctc
gtggggcttatctttgccgtgtgcctggtgggtttcatgctgtaccggatgaagaagaag
gatgagggcagctactccctggaggagccgaagcaagccaacgggggcgcctaccagaag
cccagcaggcaggaggagttctacgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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