KEGG   Sus scrofa (pig): 100521614
Entry
100521614         CDS       T01009                                 
Symbol
POLR2J
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03020  RNA polymerase
ssc03420  Nucleotide excision repair
ssc05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100521614 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100521614 (POLR2J)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    100521614 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    100521614 (POLR2J)
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100521614 (POLR2J)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     100521614 (POLR2J)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100521614 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 100521614
NCBI-ProteinID: XP_003124442
Ensembl: ENSSSCG00000007688 ENSSSCG00000024080
UniProt: F1RKE4 A0A8D0TE17
Structure
Position
3:complement(9812746..9816657)
AA seq 117 aa
MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG
YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcccctcctgccttcgagtcgttcttactcttcgagggcgagaagaagatcacc
atcaacaaggacaccaaggtgcccaatgcctgtctgttcaccatcaacaaggaagaccac
acgctgggaaatatcattaaatcgcagctgctgaaggacccccaggtgctcttcgctggc
tacaaagtcccgcaccccttggagcacaagatcatcatccgcgtgcagaccacgccggac
tacagcccacaggaggccttcaccaacgccatcacggacctcatcagcgagctctccctg
ctggaagagcgcttccgggtggccatcaaagacaagcaagaaggcatcgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (2)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
3D Structure (57)   
   PDB (57)   
Protein domain (3)   
   Pfam (3)   
All databases (114)   

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