KEGG   Sus scrofa (pig): 100522394
Entry
100522394         CDS       T01009                                 
Symbol
VIM
Name
(RefSeq) vimentin isoform X1
  KO
K07606  vimentin
Organism
ssc  Sus scrofa (pig)
Pathway
ssc05169  Epstein-Barr virus infection
ssc05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100522394 (VIM)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    100522394 (VIM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100522394 (VIM)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ssc04812]
    100522394 (VIM)
   04147 Exosome [BR:ssc04147]
    100522394 (VIM)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     100522394 (VIM)
Cytoskeleton proteins [BR:ssc04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     100522394 (VIM)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100522394 (VIM)
  Exosomal proteins of other cancer cells
   100522394 (VIM)
SSDB
Motif
Pfam: Filament Filament_head DUF1664 TolA_bind_tri RBD-FIP DUF573 Laminin_II Sec10_N CENP-F_leu_zip TPR_MLP1_2 DUF4515 GAS
Other DBs
NCBI-GeneID: 100522394
NCBI-ProteinID: XP_005668163
Ensembl: ENSSSCG00000011033
UniProt: P02543
Position
10:43516441..43526172
AA seq 466 aa
MSTRTVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGV
YATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDE
EIQELQAQIQEQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS
LNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq 1401 nt   +upstreamnt  +downstreamnt
atgtccaccaggaccgtgtcctcgtcctcctaccgcagaatgttcggcggccctggcacc
gctagccggccgagctccagccggagctacgtgaccacgtccacccgtacctacagcctg
ggcagcgcgctgcgtcccagcaccagccgcagcctctacacctcgtccccgggcggcgtg
tacgccacgcgctcctcggccgtgcgcctgcggagcagtgtgcccggcgtgcggctgctg
caggacgcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgc
accaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaag
gtgcgcttcctggagcagcagaacaagattctgctagccgagctcgagcaactcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcag
gtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaatctggccgag
gacatcatgcggctgcgggagaagttgcaggaggagacgcttcagagggaggaagccgag
agcactttgcagtctttcagacaggatgtcgacaatgcttctttggcacgtcttgacctg
gagcgcaaagtggaatccttgcaagaagagattgcctttttgaagaaactgcacgatgag
gaaatccaggagctgcaggctcagatccaggaacagcacgtccaaatcgatatggatgtt
tccaagcctgacctcacggctgccctgcgtgatgtccgccagcagtatgagagcgtggcc
gccaagaaccttcaggaggcggaggagtggtacaagtccaagtttgccgacctctccgag
gctgctaaccgcaacaacgatgccctgcgccaggccaagcaggagtcaaatgagtaccgg
agacaggtgcagtctctcacctgtgaagtggatgcgctcaaggggaccaacgagtctctg
gaacgccagatgcgggaaatggaagagaactttgccgtggaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaacatgaaggaagagatggcccgtcacctt
cgtgaataccaagacctgctgaatgtcaagatggctctcgacattgagattgccacctac
aggaagctgctggaaggagaagagagcaggatttctctgcctcttccaaatttttcttcc
ctgaacctgagggaaaccaatctggaatccctccctctggttgacacccattccaaaagg
acacttctgattaagacggttgagaccagagatggacaggttatcaatgaaacttcccag
catcacgatgatctggaataa

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