KEGG   Sus scrofa (pig): 100523862
Entry
100523862         CDS       T01009                                 
Symbol
RAB5C
Name
(RefSeq) ras-related protein Rab-5C
  KO
K07889  Ras-related protein Rab-5C
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04014  Ras signaling pathway
ssc04137  Mitophagy - animal
ssc04144  Endocytosis
ssc04145  Phagosome
ssc04148  Efferocytosis
ssc04962  Vasopressin-regulated water reabsorption
ssc05132  Salmonella infection
ssc05146  Amoebiasis
ssc05152  Tuberculosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04014 Ras signaling pathway
    100523862 (RAB5C)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100523862 (RAB5C)
   04145 Phagosome
    100523862 (RAB5C)
   04137 Mitophagy - animal
    100523862 (RAB5C)
   04148 Efferocytosis
    100523862 (RAB5C)
 09150 Organismal Systems
  09155 Excretory system
   04962 Vasopressin-regulated water reabsorption
    100523862 (RAB5C)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    100523862 (RAB5C)
   05152 Tuberculosis
    100523862 (RAB5C)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    100523862 (RAB5C)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    100523862 (RAB5C)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    100523862 (RAB5C)
   04031 GTP-binding proteins [BR:ssc04031]
    100523862 (RAB5C)
Membrane trafficking [BR:ssc04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    100523862 (RAB5C)
 Endosome - Lysosome transport
    100523862 (RAB5C)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100523862 (RAB5C)
  Exosomal proteins of other body fluids (saliva and urine)
   100523862 (RAB5C)
  Exosomal proteins of colorectal cancer cells
   100523862 (RAB5C)
  Exosomal proteins of bladder cancer cells
   100523862 (RAB5C)
GTP-binding proteins [BR:ssc04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    100523862 (RAB5C)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA MMR_HSR1 RsgA_GTPase AAA_16
Other DBs
NCBI-GeneID: 100523862
NCBI-ProteinID: NP_001231183
Ensembl: ENSSSCG00000017412
UniProt: A0A4X1U6G7 A0A8D0Y3M6
Position
12:20613991..20635952
AA seq 216 aa
MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
RQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAK
KLPKNEPQNAAGAPGRNRGVDLQENNPASRSQCCSN
NT seq 651 nt   +upstreamnt  +downstreamnt
atggcgggtcggggaggtgcagcgcgacccaacggaccagctgctgggaacaagatctgt
cagtttaagttggtcctgctgggggagtctgcggtgggcaaatccagcctcgtcctccgc
ttcgtcaagggacaattccacgagtaccaggagagcacaattggagcggccttcctcaca
cagaccgtctgcttggacgacacaacagtcaagtttgagatctgggacacagctggacag
gagcggtatcacagcctggcccccatgtactaccggggcgcccaggctgccatcgtggtc
tatgacatcaccaacacagacacgtttgcacgggccaagaactgggtgaaggagttacag
agacaggccagccccaacatcgtcatcgccctcgcgggcaacaaggcggacctggccagc
aagagagccgtggagttccaggaagcacaagcctatgcagaggacaacagtttgctgttc
atggagacatcggcaaagactgcaatgaatgtgaatgaaattttcatggccatagccaag
aagcttcccaagaacgagccccagaatgcagctggtgctccgggccggaaccgaggtgtg
gacctccaggagaacaaccccgccagccggagccagtgctgcagcaactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
Protein domain (8)   
   Pfam (8)   
All databases (60)   

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