KEGG   Sus scrofa (pig): 100524487
Entry
100524487         CDS       T01009                                 
Symbol
AFF4
Name
(RefSeq) AF4/FMR2 family member 4 isoform X2
  KO
K15185  AF4/FMR2 family member 4
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100524487 (AFF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssc03021]
    100524487 (AFF4)
Transcription machinery [BR:ssc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     100524487 (AFF4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 100524487
NCBI-ProteinID: XP_003123977
UniProt: A0A8D0PCP4 I3L7N2
Position
2:complement(135196067..135283931)
AA seq 1135 aa
MNREDRNVLRMKERERRNQEIQQGDDAFPPSSPLFAEPYKVTSKEDKLSSRIQSMLGNYD
EMKDFIGDRSIPKLVAIPKPTVPPTADEKSNPNFFEQRHGSSHQSSKWTPVGPAPSTSQS
QKRSSGLQSGHSSQRASAGSSGGSNSSGQRHDRDSYSSGGSSSRKKGQHGSEHSKSRSSS
PGKPQAVSSLSSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPSRVPFSSGQHSTQSFPP
SLMSKSSSMLQKPTAYVRPMDGQESMEPKLSSEHYSSQSHGNSMTELKPSSKAHLTKLKI
PSQPLDASASGDVSCVDEILKESQQSNFGPGEQKRYNPSSKTSNGHQSKSMLKDDLKLSS
SEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSRDDSSSHSGSESSSGSDSESESSS
SDSEANEPSQSASPEPEPPPTNKWQLDNWLNKVNPHKVSPASSVDSNIPSSQGYKKEGRE
QGTGNSYTDPAGPKETSSATPGRDSKTVQKGSESGRGRQKSPAQSDSTAQRRTVGKKQPK
KAEKAATEEPRGGLKIESETPVDMATSMPSSRHKAATKGSRKPNLKKESKSSPRPSAEKK
KYKSTSKSSQKSREIIETDTSSSDSDESESLPPSSQTPKYPESNRTPVKPSSVEEEESFF
RQRMFSPMEEKELLSPLSEPDDRYPLIVKIDLNLLTRIPGKPYKETEPPKGEKKNVPEKH
TREAQKQASDKVSNKGKRKHKNEDDNRANESKKPKTEDKNSAGHKPPSSKESSKQSTAKE
KDLLPSPAGPVSSKDPKTEHGSRKRTISQSSSLKSSNNSNKENSGSSKSSSSTSKQKRTE
GKTSSSSKEVKEKAPNSSSNCPPSTPTPDASKPRRTKLAFDDRNYSADHYLQEAKKLKHN
ADALSDRFEKAVYYLDAVVSFIECGNALEKNAQESKSPFLMYSETVELIKYTMKLKNYLA
PDATAADKRLTVLCLRCQSLLYLRLFKLKKETALKYSKTLTEHLKNSYNNSQAPSPGLGS
KAVGMPSPVSPKLSPGNSGNYSSGASSASASGSSVTIPQRIHHMAASYVQVTSNFLYATE
IWDQAEQLSKEQKEFFAELDKVMGPLIFNASIMTDLVRYTRQGLHWLRQDAKLIS
NT seq 3408 nt   +upstreamnt  +downstreamnt
atgaaccgtgaagaccggaatgtgctgcgtatgaaagaacgggaaaggcggaatcaggaa
attcagcagggcgacgacgccttcccacctagctctcctctctttgctgagccatacaaa
gttaccagcaaagaagataagctgtcaagtcgtattcagagcatgcttggaaattacgat
gaaatgaaggatttcataggagacagatctataccaaagcttgttgcaattcccaagcct
acagtaccgccaacagcagatgaaaaatcaaacccaaatttctttgaacagagacatggg
agctctcatcagagcagcaaatggactccagtaggacctgcacccagcacttctcagtct
cagaaaaggtcctcgggcttacagagtggacacagtagccagcgggccagtgcaggtagc
agtggtggctctaatagtagtggccagaggcatgaccgtgactcatatagcagtggtggg
agcagtagccggaaaaaaggccagcatggatcagaacactccaaatcacgctcttccagc
cctggaaaaccccaggctgtttcttcattaagctccagtcattccaggtctcatgggaat
gatcaccatagtaaggaacaccagcgttccaaatcccctcgggaccctgatgcaaactgg
gattctccttcccgtgtacctttttcaagtgggcagcactcaactcagtctttcccacct
tccttgatgtcaaagtccagctcgatgttacagaaacccactgcctatgtgcgacccatg
gatggacaagaatccatggaaccaaagctgtcctctgaacactacagcagccaatcccat
ggcaacagtatgactgaactgaagcccagcagcaaagcacatctcaccaagctgaaaata
ccttcccaaccattggatgcatctgcttctggtgatgtaagctgtgtagatgaaattctt
aaagagtctcagcagtccaattttggtcctggagagcaaaagagatataatccttcttct
aaaacttcaaatgggcaccagtctaaatccatgttaaaagatgacttaaaactaagcagc
agtgaagacagtgatggagaacaggattgtgataagacaatgccaaggagtacaccagga
agtaactctgaaccttcacaccataatagtgaaggggcagataactccagggatgattct
agcagccacagtggatccgaaagcagctctggatctgactcagagagtgaaagtagttcc
agcgacagtgaggcaaatgagccgtcccagagtgcatctcctgagcctgaaccaccacct
acaaacaagtggcaacttgataattggttgaataaagttaacccacataaagtgtcacca
gcttcttctgtggacagtaatattccatcatctcaaggctataaaaaggaaggccgagaa
cagggcacagggaatagctacacggatccagctggtcctaaagaaacaagttccgctact
cctggacgagactccaaaactgtccaaaagggatcagaaagtgggcgcgggaggcagaag
tcgcctgcgcagagtgatagcacagcacagaggaggactgtaggcaaaaaacaacccaaa
aaggcagagaaggcagctacggaagagccccgtggaggcctgaagatagaaagtgaaacc
cctgtagacatggccaccagcatgccctccagcaggcacaaagcagccaccaaaggctca
aggaaacccaacttaaaaaaggagtccaaatcttcccctcgaccttcagcagagaaaaag
aaatataagtcaacaagtaaatcttcccagaaatcaagggaaatcatagaaacggatacc
tcatcctcagattcggatgaaagcgagagccttcctccttcctcacaaacccctaagtac
cctgagagtaataggactcccgttaaaccctcctcagtggaggaagaagaaagttttttt
cggcaacgaatgttctctcctatggaagagaaggaacttctttcaccccttagtgagcct
gatgacaggtacccacttattgtgaagattgacctgaatcttttgactagaataccagga
aagccttacaaagaaaccgagccacccaagggggaaaagaagaatgtgccagaaaagcac
acaagagaagctcagaaacaagcctcagataaagtgtccaacaaaggcaagaggaaacat
aagaatgaagatgataaccgagccaatgagagcaagaaacccaaaacagaggacaagaat
tcagcaggccacaagccacccagcagcaaagagtcatctaaacagagtactgcaaaagaa
aaagatttgttgccttctccggctgggcctgtttcttcaaaagatccaaaaacagagcat
ggctctcggaagaggactattagtcaatcttcttccttaaagtcaagtaataacagcaac
aaggagaatagtggcagcagcaaaagcagttcctccacatcaaagcagaagaggactgag
gggaagacttccagtagctctaaggaggtcaaggaaaaggctccaaatagctcttctaac
tgccctccatctacaccaactcctgatgcttctaagcctcggagaacgaagcttgccttt
gacgacagaaattattcagcagaccattatttgcaagaagcaaaaaaactgaagcacaat
gcagatgcattgtctgataggtttgagaaagctgtatactatcttgatgctgtggtatct
ttcattgaatgtgggaatgcattagagaaaaatgctcaggaatccaaatccccattcctt
atgtattccgagacagtggagctcatcaagtataccatgaagctaaagaattacttggca
ccagatgctacagctgcagataaaagactcacagtactttgcctgcgatgccagtctctg
ctgtacctgaggctcttcaaactgaagaaggaaactgctctgaagtattcaaagacgctg
acagagcacctgaagaattcctataataattctcaagcgccatcaccaggcttaggaagc
aaagctgttgggatgccctctcctgtttctccaaagttgtcgcctggcaattcgggaaat
tattcctctggggccagtagtgcctcagcaagtggttcatcagtgaccattccacagagg
atccaccacatggcagccagctacgttcaggttacatccaacttcctctacgccactgaa
atttgggaccaagctgaacagctttccaaagagcaaaaagaattctttgctgaactggat
aaagtaatgggccctctcatctttaacgcaagcatcatgacagacctagttcgttacacc
cggcagggactgcactggcttcgccaggacgccaagttgatatcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (52)   

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