KEGG   Sus scrofa (pig): 100524520
Entry
100524520         CDS       T01009                                 
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
  KO
K12649  ATP-dependent RNA helicase DHX58 [EC:3.6.4.13]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    100524520 (DHX58)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:ssc04054]
    100524520 (DHX58)
Pattern recognition receptors [BR:ssc04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   100524520 (DHX58)
SSDB
Motif
Pfam: RIG-I_C-RD RIG-I_C ResIII DEAD Helicase_C SWI2_SNF2 AAA_19 AAA_22 Helicase_C_2
Other DBs
NCBI-GeneID: 100524520
NCBI-ProteinID: NP_001186061
Ensembl: ENSSSCG00000017416
Vega: OTTSUSG00000001431
UniProt: E3NZJ4
Position
12:20647698..20656691
AA seq 681 aa
MELRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV
TQHCEEFSRMLDRRWAITTLSGDMGPRAGFGHLARSHDLLICTAELLQKALTSEEEEEHV
ELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGTGRASTLDG
AIDHILQLCANLDTWRIMSPQNSRSQLQEHSRQPCKQYDLCHQRAQDPFGAKLKKLMDKI
HRHLEMPELRRDFGTQTYEQQVVELSQAAAEAGLQERRVYALHLRRYNDALLIHDTVRAV
DALATLRDFHTRERATKTQILQAERWLLALFDDHKNELARLAADGPENPKLEVLKEILQK
QFKGPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGNSSQSTPMTQMTQ
RDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARASQS
VYSFVAAQGSRELRREQTNEALESLMEQAVAAVQAMDQAEYQAKIQELQRAALVKRAARA
AQQKSRQQKFLAEQVQLLCINCMVAMGYGSDLRKVESAHHVNVNPNFKIYYNVSQEPVVI
DRVFKDWRPGGVIRCRNCGESWGMQIIYKSVKLPVLKVRSVLLETPNGRIQVKKWSCVPF
PVPDFDYTQYCTESLTDLSLD
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggagctgcgaccctaccagtgggaggtgatcatgcccgctctggagggcaggaatatc
atcatatggctgcccacgggcgctggcaagaccagggcggctgcttatgtggccaagagg
catctggagactgtggatggagccaaggtggttgtgctggtcaacagggtacacctggtg
acccagcattgtgaggagttcagccgcatgctggacagacgctgggccattaccaccctg
agcggggacatggggccacgagccggctttggccacctggcccggagccatgatctgctc
atctgcacagctgagctgctacagaaggcgctgaccagcgaggaggaggaggagcacgtg
gagctcaacgtcttctccctgctggtggtggatgagtgtcaccacacacacaaagacacc
gtctacaacatcatcctgagccagtacctgaagcataaattccagaggacgaagccactg
ccgcaggtgcttgggctcacagcctccccaggcacaggcagggcctcgacactcgatggc
gccattgaccacatcctgcagctctgtgccaacctggatacgtggcgcatcatgtcaccc
cagaactcccgctcccagctgcaggagcacagccggcagccctgcaaacagtacgacctc
tgccaccagcgtgcccaggacccgtttggggccaagctgaagaagctcatggacaaaatc
caccgccatctggagatgccggagttgagacgggactttgggactcagacatacgagcag
caagtggtggagctgagccaagctgcggctgaggcggggctccaggagcggagggtgtat
gcgcttcacctgcgtcgctacaacgatgcgctgctcatccacgacacagtccgcgcggtg
gacgccctggccacgctgcgggatttccacaccagggagcgcgccaccaagacccagatc
ctacaggctgagcgctggctgctggcgctgtttgatgatcacaagaatgagctggcccgc
ctggcagctgatggcccagagaacccgaaactggaggtgctgaaagaaatcctgcagaag
cagttcaagggtcccaagagcccccggggcatcatcttcacccgaacccgccagagcgct
cactccctcctgctgtggctccagcagcagccgagcctgcagactgtggacatcagggcc
cagctgttgattggggctgggaacagcagccagagcaccccgatgacccagatgacccag
agggaccagcaagaagtgatccagaagttccggactggtgccttgaacctcctggtggcc
acgagcgtggcagaggaggggctggacatcccccagtgcaacgtggtggtgcgctatggg
ctcctgaccaatgagatctccatggtccaggcaaggggccgggcccgggccagtcaaagc
gtatactcgtttgtggcagcccaaggcagccgggagctgcggcgggagcagaccaatgag
gcgctggagagtctgatggaacaggcggtggctgctgtgcaggcgatggaccaggccgag
taccaggccaagatccaggagctgcagcgggcagccttggttaagcgggcagcccgggca
gcccagcagaagagtcggcagcagaagttcctggcagagcaagtgcagctcctgtgcatc
aactgcatggtggccatgggctacgggagtgacctgcggaaggtggagagtgcccaccat
gtcaacgtgaaccccaacttcaagatctactacaacgtctcccaggagcctgtggtcatt
gacagagtcttcaaggactggaggcccgggggtgtcattcgctgcaggaactgtggggag
agctggggcatgcagataatctacaagtccgtgaagctgccagtgctcaaagtccgcagt
gtgcttctggagacgcccaacgggcggatccaggtcaagaaatggtcctgcgtgcccttc
ccggtgcctgacttcgattacacgcagtattgcaccgagagcctgaccgacctctccctg
gactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (40)   

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