KEGG   Sus scrofa (pig): 396696
Entry
396696            CDS       T01009                                 
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha
  KO
K08268  hypoxia-inducible factor 1 alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04066  HIF-1 signaling pathway
ssc04137  Mitophagy - animal
ssc04140  Autophagy - animal
ssc04148  Efferocytosis
ssc04659  Th17 cell differentiation
ssc04919  Thyroid hormone signaling pathway
ssc05167  Kaposi sarcoma-associated herpesvirus infection
ssc05200  Pathways in cancer
ssc05205  Proteoglycans in cancer
ssc05208  Chemical carcinogenesis - reactive oxygen species
ssc05211  Renal cell carcinoma
ssc05230  Central carbon metabolism in cancer
ssc05231  Choline metabolism in cancer
ssc05235  PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04066 HIF-1 signaling pathway
    396696 (HIF1A)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    396696 (HIF1A)
   04137 Mitophagy - animal
    396696 (HIF1A)
   04148 Efferocytosis
    396696 (HIF1A)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    396696 (HIF1A)
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    396696 (HIF1A)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    396696 (HIF1A)
   05205 Proteoglycans in cancer
    396696 (HIF1A)
   05208 Chemical carcinogenesis - reactive oxygen species
    396696 (HIF1A)
   05230 Central carbon metabolism in cancer
    396696 (HIF1A)
   05231 Choline metabolism in cancer
    396696 (HIF1A)
   05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
    396696 (HIF1A)
  09162 Cancer: specific types
   05211 Renal cell carcinoma
    396696 (HIF1A)
  09172 Infectious disease: viral
   05167 Kaposi sarcoma-associated herpesvirus infection
    396696 (HIF1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    396696 (HIF1A)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    396696 (HIF1A)
SSDB
Motif
Pfam: PAS_3 PAS_11 HIF-1a_CTAD PAS HIF-1 PAS_9 PAS_4 HLH DDRGK
Other DBs
NCBI-GeneID: 396696
NCBI-ProteinID: NP_001116596
Ensembl: ENSSSCG00000005096
UniProt: A0T1H6
Position
1:190625436..190673926
AA seq 824 aa
MEGAGGANDKKKISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM
RLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM
GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGLVKKGKEQNTQRSFFLRMKCTLTSRGR
TMNIKSATWKVLHCTGHIHVYDTNNNQSQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTECV
LKPVESSDMKMTQLFTKVESEDTSSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTET
DDQQLEEVPLYNDVMLPSSNEKMQNINLAMSPLPASETPKPLRSTSADPALNQEVALKLE
PNPESLELSFTMPQIQDQPASPSDGSTRQSSPEPNSPSEYCFDVDSDMVNEFKLELVEKL
FAEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSTSPQSTSTITVF
QPTPMPEPPVTTTTPAATTDELKTVAKDGMEDIKILIAFPSPPHVHKETTCATTSPYSDT
GSRTASPNRAGKGVIEQTEKSHPRSPNVLSVALSQRTTVPEEELNPKIIAFQNAQRKRKI
EHDGSLFQAVGIGTLLQQPDDRATTTSLSWKRVKGCKSSEQNGTEQKTIILIPSDLACRL
LGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN
NT seq 2475 nt   +upstreamnt  +downstreamnt
atggaaggcgccggcggcgcgaacgacaagaaaaaaataagttctgaacgtcgaaaagag
aagtctagagatgcagccagatctcgacgaagtaaagagtctgaagttttttatgagctt
gctcatcagttgccacttccccataatgtgagctcacatcttgataaggcttctgttatg
aggcttaccatcagctatttgcgtgtgaggaaacttctagatgctggtgatttggatatt
gaagatgaaatgaaggcacagatgaattgtttttatttgaaagccttggatggttttgtt
atggtactcacagatgatggtgacatgatttatatttctgataatgtgaacaaatacatg
ggattaactcagtttgaactaactggacacagtgtgtttgattttactcatccgtgcgac
catgaggaaatgagagaaatgcttacacacagaaatggccttgtgaaaaagggtaaagag
caaaatacacagcggagcttttttctcagaatgaagtgtaccttaactagcagggggaga
actatgaacataaagtctgcaacatggaaagtacttcactgcacaggtcatattcatgta
tatgataccaacaataaccagtctcagtgtgggtataagaaaccacctatgacgtgcttg
gtgctgatttgtgaacccattcctcatccatcaaatattgaaattcctttagatagcaag
acatttctcagtcgtcacagtctggatatgaaattttcttattgtgatgaaagaattact
gaattaatgggatatgagccagaagaacttctgggccgctcaatttatgaatattatcat
gctttggactctgatcatctgaccaaaactcatcatgatatgtttactaaaggacaagtc
accacaggacagtacaggatgcttgccaaaagaggtggatatgtctgggttgaaactcaa
gcaactgtcatatataacactaagaactctcaaccacagtgcattgtatgtgtaaattat
gtcgtgagtggtattatacagcacgacttgattttctcccttcaacaaacagaatgtgtc
ctcaaaccagttgaatcttcagacatgaaaatgactcagctatttaccaaagttgaatca
gaagatacaagtagcctctttgataaacttaagaaggaacctgatgctttaactttgttg
gccccagctgctggagacacaatcatatctttagattttggcagcaatgacacagaaact
gatgatcaacaacttgaggaagttccattgtataatgatgtaatgctcccctcatccaat
gaaaaaatgcagaacataaatttggcaatgtctccattgcctgcctctgaaactccaaag
ccacttagaagtactagtgctgaccctgcactcaatcaggaagttgcattaaagttagaa
ccaaatccagagtccctggaactttcttttaccatgccccagattcaagatcagccagct
agtccttctgatggaagcactagacagagttcacctgagcctaacagtcccagtgaatat
tgttttgatgtggatagtgatatggtcaatgaattcaagttggaattggtagagaaactt
tttgctgaagacacagaggcaaagaatccattttctactcaggacactgatttagacttg
gagatgttagctccttatatcccaatggatgatgacttccagttacgttccttcgatcag
ttgtcaccattggaaagcagttctacaagtcctcagagtacgagcacaattacagtattc
cagcccactccaatgccagaacctcctgtaaccaccaccactccagctgccaccactgac
gaattaaaaacagtggcaaaagatggtatggaagacattaaaatactgattgcatttcca
tctcctccccacgtacataaagaaactacttgtgctacaacatcaccatacagtgatact
ggaagtcggacagcctcaccaaacagagcaggaaaaggagtcatagaacagacagaaaaa
tctcatccaagaagtcctaatgtgttatctgtcgctttgagtcaaagaactactgttcct
gaggaagaactaaatccaaagataattgcttttcagaatgctcagagaaagcgaaaaata
gaacatgatgggtcactttttcaagcagtaggaattggaacattattacagcagccagat
gatcgtgcaactactacatcactttcttggaaacgtgtaaaaggatgcaaatctagtgaa
cagaatggaacggagcaaaagacaattattttaataccctctgacttagcctgtagactc
ctggggcaatcaatggatgagagtggattaccacagctgaccagttatgattgtgaagtt
aatgctcctatacaaggcagcagaaacctactacagggtgaagaattactcagagctttg
gatcaagttaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (14)   
   KEGG PATHWAY (14)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (11)   
   RefSeq(nuc) (1)   
   GenBank (5)   
   EMBL (5)   
Protein domain (9)   
   Pfam (9)   
All databases (62)   

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