KEGG   Sus scrofa (pig): 396801
Entry
396801            CDS       T01009                                 
Symbol
LDLR
Name
(RefSeq) low-density lipoprotein receptor precursor
  KO
K12473  low-density lipoprotein receptor
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04144  Endocytosis
ssc04913  Ovarian steroidogenesis
ssc04925  Aldosterone synthesis and secretion
ssc04927  Cortisol synthesis and secretion
ssc04934  Cushing syndrome
ssc04976  Bile secretion
ssc04979  Cholesterol metabolism
ssc05145  Toxoplasmosis
ssc05160  Hepatitis C
ssc05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    396801 (LDLR)
 09150 Organismal Systems
  09152 Endocrine system
   04913 Ovarian steroidogenesis
    396801 (LDLR)
   04925 Aldosterone synthesis and secretion
    396801 (LDLR)
   04927 Cortisol synthesis and secretion
    396801 (LDLR)
  09154 Digestive system
   04976 Bile secretion
    396801 (LDLR)
   04979 Cholesterol metabolism
    396801 (LDLR)
 09160 Human Diseases
  09172 Infectious disease: viral
   05160 Hepatitis C
    396801 (LDLR)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    396801 (LDLR)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    396801 (LDLR)
  09167 Endocrine and metabolic disease
   04934 Cushing syndrome
    396801 (LDLR)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    396801 (LDLR)
Membrane trafficking [BR:ssc04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    396801 (LDLR)
SSDB
Motif
Pfam: Ldl_recept_a Ldl_recept_b FXa_inhibition cEGF EGF_CA SGL EGF hEGF EGF_3 NBP1
Other DBs
NCBI-GeneID: 396801
NCBI-ProteinID: NP_001193283
Ensembl: ENSSSCG00000030900
Vega: OTTSUSG00000003517
UniProt: Q28832 W0G5E7
Position
2:69828348..69864823
AA seq 845 aa
MKSTGWVLRWAVALLIAAVAAAVEEKCGRNEFQCRDGKCISYKWICDGNTECKDGSDESL
ETCMSVTCKIGDFSCGGRVNRCIPESWRCDGQQDCENGSDEEGCSPKTCSQDEFRCQDGK
CIAPKFVCDSDRDCLDGSDEASCPTPTCGPASFQCNSSTCIPELWACDGDPDCEDGSDEW
PQHCRSHSSSLPERSNNPCSALEFHCHSGECIHSSWRCDGDTDCKDKSDEENCDVATCRP
DEFQCSDGTCIHGSRQCDREYDCKDMSDEQGCVNATLCEGPNKFKCQSGECISLDKVCNS
VRDCRDWSDEPLKECGTNECLDNKGGCSHICNDLKIGYECLCPEGFQLVDKHRCEDIDEC
QDPDACSQICVNLEGSYKCQCEEGFQLEPLTKACKAIGTIAYLFFTNRHEVRKMTLDRSE
YTSLIPNLKNVVALDTEVASNRIYWSDLSQRKIYSTQIDRAPSFSSYDTIIGEDLQAPDG
LAVDWIHSNIYWTDSILGTVSVADTKGVKRKTLFQEKGSKPRAIVVDPVHGFMYWTDWGT
PAKIKKGGLNGVDVYSLVTEDIQWPNGITLDLSGGRLYWVDSKLHSISSIDVNGGNRKTV
LEDKTKLAHPFSLAIFEDKVFWTDIINEAIFSANRLTGSDIHLMAENLLSPEDIVLFHNL
TQPRGVNWCERTALQNGGCQYLCLPAPQINPRSPKFTCACPDGMLLAKDMRSCLTETEPA
GTTQGPSMVNSTAVGPKHTASSELTTAESVTMSQHALGDVAGRGVTEKPQSVGALYIVLP
IALLILLFFGTFLLWKNWRLKSINSINFDNPVYQKTTEDEVHICRSQDGYTYPSRQMVSL
EDDVA
NT seq 2538 nt   +upstreamnt  +downstreamnt
atgaagtccacgggctgggtcctgcgatgggctgtcgccttgctcattgctgcggtggca
gctgcagtggaagagaaatgtgggagaaacgagttccagtgccgagacgggaaatgcatc
tcctacaagtggatttgtgatgggaacaccgagtgcaaggacgggtccgatgagtccctg
gagacgtgcatgtctgtcacctgcaagataggggactttagctgtgggggccgtgtcaac
cgctgcattcctgagtcttggaggtgtgacggtcagcaggactgcgagaatggctcagat
gaggaaggctgttcccccaagacgtgctcccaagatgagttccgctgccaggacggcaag
tgcatcgccccaaagtttgtctgtgactcggaccgggactgcctggacggctcggatgaa
gcatcctgccccacacccacctgtggccccgccagcttccagtgcaacagctccacctgc
atccctgagctgtgggcctgtgatggtgatcctgactgcgaggacggctcagacgagtgg
ccacagcactgcaggagccacagctcatcactccccgagaggagcaacaacccctgctca
gccctcgagttccactgccacagtggcgagtgcatccactccagctggcgctgcgacgga
gacactgactgcaaggacaagtctgacgaggagaactgcgatgtggccacgtgccggcct
gacgagttccagtgctcagacgggacctgcatccatggtagccggcagtgcgacagggaa
tatgactgcaaggacatgagcgacgagcagggctgtgtcaatgcgactctgtgcgagggg
cccaacaagttcaagtgtcaaagcggcgagtgcatctccttggacaaagtgtgcaactca
gtcagggactgccgggactggtcagacgagcccctcaaggagtgtgggaccaacgagtgt
ctggacaacaagggtggctgctcccatatctgcaatgacctcaagatcggctatgagtgc
ctctgtcccgagggcttccagctggtggataagcacagatgcgaagatatcgacgagtgt
caggacccagacgcctgcagccagatctgcgtgaacctcgagggcagctacaagtgccag
tgtgaggagggcttccagctggagcctctcaccaaggcctgcaaggccataggcaccatc
gcctacctcttcttcaccaaccgccacgaggtgaggaagatgaccctggaccgtagtgag
tacaccagcctcatccccaacctgaagaacgtggtcgctctggacactgaggtggccagc
aatagaatctactggtctgacctgtctcagaggaagatctacagtacccagatcgacagg
gcccccagcttttcctcctatgacaccattattggcgaagatctccaggcccccgatggg
ctggcggtggactggatccacagcaacatatactggactgactccatcctgggcactgtc
tccgtggctgacaccaagggcgtgaagaggaagactctcttccaagagaaaggctccaag
ccacgggccattgtggtggaccctgtccatggcttcatgtactggactgattggggaacc
cccgccaagatcaagaagggcggcctgaacggagtggacgtctactcgctggtgacggag
gacatccagtggcccaatggcatcaccctggatctttctggcggccgcctttactgggtc
gactccaagctccactccatctccagcatcgatgtcaacggggggaaccggaagaccgtc
ctggaggacaagacgaagctggcgcaccccttctccttggccatttttgaggataaagta
ttttggacagatataatcaacgaagccattttcagtgccaaccgcctcacaggctcggac
atacatttgatggcagaaaacctgttgtctccagaggacattgtccttttccacaacctc
acacagccgagaggggtgaactggtgtgaaaggaccgccctccaaaacggtggctgccag
tacctgtgtctgccagctccacagatcaacccacgctcgccgaagttcacctgtgcctgc
ccggatggcatgctgttggccaaggacatgaggagctgtctcacagagactgaacctgca
ggaaccacccagggaccttccatggtcaactcgacagctgtggggccaaagcacaccgcc
agctctgagctcaccacagccgagtcagtgacgatgtcccaacatgccctgggcgacgtt
gctggccgaggagtcactgagaagccccagagcgtgggtgctctgtacattgtcctcccc
attgcactgctcatcctcctcttcttcggaaccttcctcctctggaagaactggaggctt
aagagcatcaacagcattaacttcgacaaccctgtgtaccagaagaccacggaagacgag
gtccacatctgccgcagccaggacggctacacctacccctcgagacagatggtcagcttg
gaggatgacgtggcgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (47)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (8)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (25)   
   RefSeq(nuc) (5)   
   GenBank (10)   
   EMBL (10)   
Protein domain (10)   
   Pfam (10)   
All databases (109)   

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