KEGG   Sus scrofa (pig): 396840
Entry
396840            CDS       T01009                                 
Symbol
SOX9
Name
(RefSeq) transcription factor SOX-9
  KO
K18435  transcription factor SOX9 (SOX group E)
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04024  cAMP signaling pathway
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04024 cAMP signaling pathway
    396840 (SOX9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    396840 (SOX9)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    396840 (SOX9)
SSDB
Motif
Pfam: HMG_box Sox_N HMG_box_2
Other DBs
NCBI-GeneID: 396840
NCBI-ProteinID: NP_999008
Ensembl: ENSSSCG00000017251
UniProt: O18896 F1RV30
Position
12:complement(8642154..8647315)
AA seq 511 aa
MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
NGHPGVPATHGQVTYTGSYGISSTAATPAGAGHVWMSKQQAPPPPPPPQQPPPAPPAPQA
PPQQPQAPPQQPQAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQI
AYSPFNLPHYSPSYPPITRSQYDYTDHQNSGSYYSHAAGQGSGLYSTFTYMNPAQRPMYT
PIADTSGVPSIPQTHSPQHWEQPVYTQLTRP
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgaatctcctggaccccttcatgaagatgaccgacgagcaggagaagggcctgtccggc
gcccccagccccaccatgtccgaggactcggcgggctcgccctgcccttcaggctccggc
tcggacacagagaacacgcggccccaggagaacacgttccccaagggcgagccggacctg
aagaaggagagcgaagaggacaagttccccgtgtgcatccgcgaagccgtcagccaggtg
ctcaagggctacgactggacgctggtacccatgccggtgcgcgtcaacggttcgagcaag
aataagccgcacgtcaagcggcccatgaacgccttcatggtgtgggcgcaggcggcgcgc
aggaagctggcggatcagtacccgcacctgcacaacgcggagctcagcaagactctgggc
aaactctggagactgctgaatgagagcgagaagcggcccttcgtggaggaggcggagcgg
ctgcgcgtgcagcacaagaaggaccacccggattacaagtaccagccgcggcggagaaag
tcggtgaagaacggccaggcggaggccgaggaggccacggagcagacgcacatctctccc
aacgccatcttcaaggcgctgcaggccgactcgccgcactcctcctcgggcatgagcgag
gtgcactctcccggcgagcactcggggcaatcccagggtccaccaacgccacccaccacc
cccaaaaccgacgtgcagcctggcaaggctgacctgaagcgagaggggcgccccctgcca
gaggggggcagacagccccccatcgacttccgcgacgtggacatcggcgagctgagcagc
gacgtcatctccaacatcgagaccttcgacgtcaacgagttcgaccagtacctgccgccc
aatggccacccgggggtgccggccacgcacggccaagtcacctacacgggtagctacggc
atcagcagcaccgcggcgaccccggcgggcgcgggccacgtgtggatgtccaagcagcag
gcgccgccgccgccgccgcccccgcagcagccgccgcccgccccgccggccccgcaggcg
cccccgcagcagccgcaggcgcctccgcagcagccgcaggcgcccccgcagcagccgcag
gcgcacacgctgaccacgctgagcagcgagccgggccagtcccagcgaacgcacatcaag
acggagcagctgagtcccagccactacagcgagcagcagcagcactcgccgcagcagatc
gcctacagccccttcaacctcccgcactacagcccctcgtacccgcccatcacccgctcg
cagtacgactacacagaccaccagaactccggctcctactacagccacgcggcgggccag
ggctcgggcctctactccaccttcacctacatgaacccggcgcagcggcccatgtacacc
cccatcgccgacacctccggggtcccttccatcccgcagacccacagcccccagcactgg
gaacagcccgtctacacacagctcaccagaccttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (30)   

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