KEGG   Sus scrofa (pig): 396925
Entry
396925            CDS       T01009                                 
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 precursor
  KO
K06527  vascular cell adhesion molecule 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04064  NF-kappa B signaling pathway
ssc04514  Cell adhesion molecules
ssc04668  TNF signaling pathway
ssc04670  Leukocyte transendothelial migration
ssc04933  AGE-RAGE signaling pathway in diabetic complications
ssc05143  African trypanosomiasis
ssc05144  Malaria
ssc05417  Lipid and atherosclerosis
ssc05418  Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04064 NF-kappa B signaling pathway
    396925 (VCAM1)
   04668 TNF signaling pathway
    396925 (VCAM1)
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    396925 (VCAM1)
 09150 Organismal Systems
  09151 Immune system
   04670 Leukocyte transendothelial migration
    396925 (VCAM1)
 09160 Human Diseases
  09174 Infectious disease: parasitic
   05144 Malaria
    396925 (VCAM1)
   05143 African trypanosomiasis
    396925 (VCAM1)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    396925 (VCAM1)
   05418 Fluid shear stress and atherosclerosis
    396925 (VCAM1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    396925 (VCAM1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:ssc04090]
    396925 (VCAM1)
   04091 Lectins [BR:ssc04091]
    396925 (VCAM1)
CD molecules [BR:ssc04090]
 Proteins
  396925 (VCAM1)
Lectins [BR:ssc04091]
 I-type lectins (Siglecs)
  396925 (VCAM1)
SSDB
Motif
Pfam: Ig_3 ig I-set Ig_2 C2-set V-set C2-set_2 Ig_4 Ig_5 Ig_6 ICAM1_3_5_D2 ICAM_N Izumo-Ig C1-set Receptor_2B4
Other DBs
NCBI-GeneID: 396925
NCBI-ProteinID: NP_999056
Ensembl: ENSSSCG00000006862
Vega: OTTSUSG00000002219
UniProt: Q28939
Position
4:complement(117496914..117511211)
AA seq 538 aa
MPRNIVVIFGASNILWMVFAVSQNVKVEIFPEDKMIAQIGDSASLTCSAPDCESSLSFSW
RTQIDSPLNGKVKTNGTRSTLVMNPVSFENEHSYLCTVSCGNLKGERGIQVEIYSFPKDP
EIHWSSLPEVGKPVTVRCLVPDVYPVEKLEIELLKDNHSMVSQNFLELIDIKSKETKSLE
FTFTPTEEDIGKAIVCQATLIIDGQPSVKTTPEKMQVYISPKDPVISVNPSTSLQEGDSM
MMTCTSEGLPAPQISWSKKLDNGDQQLLSGNATLTLIAMRMEDSGIYVCEGVNPVGTNRK
EVELTVQVAPRDTTISVNPSSTLEEGSSVNMTCSSDGFPAPKILWSKKLRDGNLEPLSEN
TTLTLTSTKMEDSGIYVCEGINQAGINRKEVELIIQAAPKDLQLTAFPSESVKEGDTVII
SCTCGNVPPTLIILKKKAETGDTVLKSTDGAYTIHRARLADAGVYECESKNEIGLQLRSI
TLDVKGRESNKDYFSSELLVLYCASSLIIPAIGVIIYFARKANMRGSYSLVDAQKSKV
NT seq 1617 nt   +upstreamnt  +downstreamnt
atgccgaggaatatcgtcgtgatctttggagcctcaaatatactttggatggtgtttgcc
gtttctcaaaatgttaaagtcgagatcttccctgaagacaaaatgattgcgcagattggt
gactccgcttccctgacttgcagcgcaccggactgcgagtcctccctgtctttctcttgg
agaactcagatagacagtcctctgaatggaaaagtgaaaactaacgggaccagatccacg
ctggtcatgaatcccgttagttttgagaatgaacactcctatctgtgcacagtctcctgc
gggaatttgaaaggggaaagaggaatccaagtggagatctactctttccccaaggaccca
gagattcactggagtagccttccagaagttgggaagccagttacagtcaggtgtctggtg
cctgacgtttacccggttgaaaagttggagatagaattactgaaggacaaccattccatg
gtgtcccagaactttctggagcttatagacataaagtccaaggaaacgaagagtttggaa
tttacctttactcctaccgaagaggatattgggaaagctattgtttgtcaagctacatta
atcattgatggtcagccctcagtaaagacaacaccagaaaaaatgcaagtctacatctca
cccaaggacccagttatatctgtgaatccctccacaagcctacaagaaggtgactccatg
atgatgacatgtaccagtgaaggtctaccagctccacagatttcctggagcaagaaatta
gataatggagatcaacagctcctttctgggaatgcaactctcactttaattgctatgagg
atggaagattctggaatttacgtgtgcgagggagttaatccggttgggacaaacagaaaa
gaggtggaattaactgttcaagttgctcccagggatacgaccatctccgtcaacccctcc
tccaccctggaggagggcagttctgtgaacatgacctgctctagtgatggctttccagct
ccgaaaatcctctggagcaagaagctgagggatgggaatctagagcctctttctgagaat
acaactctcaccttgacatctacaaaaatggaagattccggtatttatgtgtgtgaaggg
attaaccaggctggaataaacagaaaagaagttgaattaattatccaagctgctccaaaa
gatctacaacttacagcttttccttctgagagcgtcaaggaaggggacactgtcattatc
tcctgtacatgtggaaatgtccccccgactttgataatcctgaagaaaaaagcagagaca
ggcgacacggtgctaaagtctaccgatggtgcatataccatccacagggcccggctagcg
gatgcaggtgtatacgaatgtgaatccaagaatgaaattggcttgcaattaagaagtata
acgcttgacgtgaaaggaagagaaagtaacaaggactatttttcttctgaacttctcgtg
ctctattgtgcatcctccttaataatacctgccatcggggtgattatttactttgctaga
aaagccaacatgagagggtcatatagtcttgtagacgctcaaaaatcaaaagtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (15)   
   Pfam (15)   
All databases (55)   

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