KEGG   Sus scrofa (pig): 397014
Entry
397014            CDS       T01009                                 
Symbol
HTT
Name
(RefSeq) huntingtin
  KO
K04533  huntingtin
Organism
ssc  Sus scrofa (pig)
Pathway
ssc05016  Huntington disease
ssc05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    397014 (HTT)
   05022 Pathways of neurodegeneration - multiple diseases
    397014 (HTT)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    397014 (HTT)
   04131 Membrane trafficking [BR:ssc04131]
    397014 (HTT)
   03029 Mitochondrial biogenesis [BR:ssc03029]
    397014 (HTT)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     397014 (HTT)
Membrane trafficking [BR:ssc04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    397014 (HTT)
Mitochondrial biogenesis [BR:ssc03029]
 Mitochondrial quality control factors
  Regulator of mitochondrial biogenesis
   Other regulator of mitochondrial biogenesis
    397014 (HTT)
SSDB
Motif
Pfam: Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT
Other DBs
NCBI-GeneID: 397014
NCBI-ProteinID: NP_999129
Ensembl: ENSSSCG00000008697
UniProt: Q9GM99
Position
8:1809768..1934002
AA seq 3139 aa
MATLEKLMKAFESLKSFQQQQQQQQQQQQQQQQQQLPPPPPQPPQPPPQTQPPPQPPPPP
PPPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIA
MELFLLCSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALW
RFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEI
KVLLKAFVANLKSGSPTVRRTAAGAAVSVCQHSRRTRYFYSWLLSVLLGLLVPVEEEHGT
LLILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQ
DHNVVTGALELLQQLLRTPPPELLQALTSPGGIAQLTANNDEPRCRSRSGSIVELIAGGG
SSCSPVLSRKQKGKVLLGDAAALEDEPASRSEGSSPALTASVTGELGGELAPSSGVSTPG
SASSAADSVGHDIITEQPRSQHTLQPDSVDLSGCDLSSAATDGDEEDILSHSSSQMSAVP
SDPAMDLNDGTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDGADGQYSGLRLGQPQDA
DADEDAAGLLPHGGPDAFRSSPTALQQSHVLKSLGHSRQPSDSSVDKFVSRDEAAEAGEP
ENKPCRIKGDIGQSTDEDSAPLVHCVRLLSASFLLTGKRNALVPDRDVRVSVKALALSCV
GAAVALHPESFFSKLYKAPLDSVEYPDEQYVSDILSYIHHGDPQVRGATAILCGTLVSSI
LSRSRFHVGDWMGAVRALTGNAFSLVDCIPLLQKTLKDESSVTCKLACTAVRLCVAALCG
SSYSQWGLQLITDLLTLRSSSYWLVRTELLETVAEIDFRLVSFLEAKAENLHRGAHHYTG
LLRLQERVLNNVVIYLLGDEDPRVRHVAAASLVRLVPKLFYKCDQGQADPVVAVARDQSS
VYLKLLMHETQPPSHFSVSTVTRTYRGYNLLPSVTDVTLENNLSRVTAAVSHELITSTTR
ALTFGCCEALCLLSTAFPVCVWSLGWHCGVPPLGAADESRKSCTVGMATTVLTLLSSAWF
PLDLSAHQDALILAGNLLAASAPRSLRSSWTLEEEASPAATRQEEVWPALGDRSLVPMVE
QLFSHLLKVLNICAHVLDDVAPGPAVKAALPSLANPPSLSPIRRKGKEKEPGEQASVPVS
PKKGGEASPAARQSDTSGPVAANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQSG
TEKFRGLLCSALDVLSQVLEVATLQDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKTL
FGTNLASQFDGLASTPSKCQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNLV
QAEQDHDASGWFDVLQKVSTQLKTNLTSVTKNRADKTALHNHIRLFEPLVIKALKQYTTT
TSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFF
FLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKAD
AGKELETQKEVVVSMLLRLVQYHQVLEMLILVLQQCHKESEDKWKRLSRQVADVILPMLA
RQQMHIDSHDALGVLNTLFEVLAPSSLRPVDMLLRTMFLTPDSLAAVSTVQLWVSGILAI
LRVLISQSTEDIVLSRIQELSFSPSLISCPMIIRLRGGNSDSAPEEHSEGRQGKNLPEET
FSRFLLQLVGILLEDIVTKRLRVEVSEQQHTFYCQELGTLLMCLIHIFKSGMFRRVTAAA
SRLLTDGADGAFFGLERLNAWVRAMVPTHPALVLLWCQILLLVSHTDYRWWAEVQQTPRR
RSLSSTKSLGPQMSGEDEDSDAASRLGMCSREIVRRGALILFCDYVCQNLHDSEHLTWLI
VNHIQDLIHLSHEPPVQDFISAVHRNAAASGLFIQAIQSRCENLSAPTTLKKTLQCLEGI
HLSQSGAVLTLYVDKLLRTPFRVLARMVDTLACRRVEMLLAANLQSSMAQLPVEELTRIQ
EYLQSSGLAQRHQRLSSLLDRLRLATAPGSRGPAPRVSSHPLDGDGPLALETVSPDKDWY
LRLVKSQCWTRSDSALLEGAELVSRIPPGDMGAFLMNPEFNLSLLAPCLGLGMREISAGQ
KSPLFEAARAATLDRVTSVVQQLPAVHQVFQPFLPTEPAAYWSKLDDLFGDAVLYRSLTT
LARALAQYLLVLSKLPGPLQLPPEKEADTVRFVVMTLEALAWHLVHEQIPLSLDLQAGLD
CCCLALQLPGLWSALSSPEMVTHACSLILCVRFILEAIVVQPGDQLLSPERKADTPKAAG
EDEVDSNTQSPPYLGAACRMVAEMVASLPSVLALGRERSSRTPAFLAPVLRNVIVSLARL
PLVNSYTRVPPLVWKLGWSPRPGGDFGTAFPEIPVEFLQEKEVFREFIFRINTLGWTSRT
QFEETWATLLGVLVTQPLVMEQEENPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNP
AVSCLEQQPRNKPLKALDTRFGRKLSVIRGVVEQEVQAMVSKRENVATHHLYQAWDPVPS
LSPATTGALISHDRLLLQVNPERELGDTGYQLGQVSIHSVWLGNSITPLREEEWDEEEEE
EADVPVPSPPTSPLNSRKHRAGVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRS
LLVVSDLFTERSQFEMMYLTLTELRRAHPPEDEILLQYLVPATCKAAAVLGMDKAVAEPV
SRLLESTLRSSHLPSRIGALHGALYVLECDLLDDTAKQLIPAISDYLLSNLRGVAHCVNV
HSQQHVLVMCATAFYLIENYPLDVGPEFSASVIQMCGVMLSGSEESTPSIVYHCVLRGLE
RLLLSEQLSRLDAESLVKLSVDRVNAHSPHRAMAALGLMLTCMYTGKEKISPGRSSDPSP
AAPDSESVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLS
NQQPYPQFMATVVYQVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMAVWSLSCFFVSA
STSPWVSAILPHVVSRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAVPG
NPYHRLLTCLQDVHRVAAC
NT seq 9420 nt   +upstreamnt  +downstreamnt
atggcgaccctggaaaagctgatgaaagctttcgagtctctcaagtccttccagcagcag
cagcagcaacagcagcagcagcagcagcagcagcagcaacagcagctgccgccaccgccg
cctcagcctcctcagccgccaccgcagacgcagccgccgcctcagccgccgccgcccccg
cccccgccgccgccgccgccgcccggcccggcagtggccgaggagccgctgcaccgacca
aagaaggagctctcagccaccaagaaagatcgtgtgaatcattgtctgacaatatgtgaa
aacatagtggcacagtctctcagaaattcaccagaatttcagaaactgctgggcatcgct
atggaacttttcctgctgtgcagtgatgatgcagagtcagatgtcaggatggtggctgac
gaatgcctcaacaaagtcatcaaggctttgatggattccaaccttccgaggttacagcta
gaactttataaggaaattaaaaagaacggtgctcctcggagcctccgtgctgccctgtgg
aggtttgctgagctggctcacctggtccggcctcagaagtgcaggccgtacttggtgaac
ctcttgccctgcctgacgcgcacaagcaagaggcccgaggagtctgttcaggagaccttg
gctgcagccgtcccgaaaatcatggcgtcctttggcaatttcgcaaacgacaatgagatt
aaggttctgttgaaggccttcgtagcgaacctgaagtccggctcccccacggtccggcgc
acggcggcgggcgcggcggtgagcgtgtgccagcactcccggcggacgcgctacttctac
agctggctgctcagcgtgctcttaggtctgctcgtgcctgtggaggaggaacacggcacc
ctcctgattctcggggtgctgctcaccctgaggtatctggtgcccctgctgcagcagcag
gtcaaggacacgagcctgaaaggcagcttcggggtgacccggaaggaaatggaggtctct
ccctcgacggaacagcttgtccaggtttacgagttgaccttgcattacactcagcaccaa
gaccacaacgttgtgacgggggccttggagctcctgcagcagctgctcaggacgcctccc
ccggagctcctgcaggcgctgacctcgccgggcggcatcgcgcagctcaccgccaacaac
gacgagcccaggtgccgaagtcgcagcgggagcatcgtggagctcatagctggagggggt
tcttcatgcagccctgtcctttcaagaaaacaaaaagggaaggtgctcttgggagacgca
gcggccttggaggatgagcctgcgtcgcggtcggagggcagcagccccgccctcacagcc
tcggtcacgggtgagctgggtggtgagctggccccctcctccggtgtctccactcctggc
tctgccagctccgctgccgactctgtgggtcacgacatcatcacagaacagccccggtct
cagcacacgctgcagccggactcggtggatctgagcggctgtgacttgagcagcgctgcc
accgatggggacgaggaggacatcttgagccacagctccagccagatgagtgccgtcccg
tcggaccctgccatggacttgaacgatgggacccaggcctcctcacccgtcagcgacagc
tcccagaccaccaccgagggccctgactcggctgtgaccccttcagacagctctgaaatt
gtgttggatggtgcagacggccagtactctgggctgcggttgggacagccccaggacgcg
gacgcggacgaggacgccgcagggctccttccccacggaggcccggatgctttcagaagc
tcccccaccgcccttcaacagtcacatgtgttgaaaagcctgggccacagcaggcagccc
tccgacagcagtgtagataaatttgtctcgagagacgaagctgctgaggcaggagagcca
gaaaacaagccttgccgcatcaaaggtgacataggccagtccaccgacgaggattctgct
cctctcgtccactgtgtccgccttttatctgcttcatttttgctgacggggaaaagaaac
gccttggttccagaccgggatgtgagggtcagtgtgaaggcgctggcgctcagctgtgtg
ggcgccgccgtggccctgcatcctgagtccttcttcagcaagctttataaggcgcccctg
gacagcgtggagtacccggacgagcagtacgtgtcggacatcctgagctacatccaccac
ggcgacccgcaggtccgaggcgccacagccatcctctgcggaaccctggtctcctccatc
ctcagcaggtcccgcttccacgtgggggactggatgggcgccgtccgggctctgacagga
aatgcattttctctggtggactgcattccgctgctgcaaaagacgttgaaggatgaatcc
tccgttacgtgcaagttggcgtgcacagccgtgaggctctgcgtggcggctctctgcggc
agcagctacagccagtgggggctgcagctcatcaccgacctgctgaccctgaggagcagc
tcctactggctggtgcggaccgagctcctggagaccgtggcagagattgacttcaggttg
gtgagctttttggaggcaaaagcagaaaacctacacagaggggcccatcactacacaggg
ctgttaagactgcaagaacgagtgctcaataatgttgtcatctacctgctaggggacgag
gaccccagggtgcgacatgttgctgcagcttcgttagtgaggctcgtcccaaagctgttt
tataaatgtgaccaaggccaggctgacccagtggtggccgtggcgagagatcaaagcagt
gtttacctgaagctcctcatgcacgagacgcagcctccgtcgcacttctccgtcagcacc
gtcaccagaacatacagaggctataacctactaccgagcgtcaccgacgtcactctggaa
aataacctttcgcgagttactgcagcagtttctcatgaactcatcacgtcaaccacccga
gcactcacatttggatgctgtgaagctttgtgtcttctttcaactgccttccctgtttgc
gtctggagtttaggctggcactgtggagtgccgcctctgggcgccgcggatgagtccagg
aagagctgtactgtcggcatggccaccacggtcctgacgctgctctcctcagcttggttc
ccgctggacctctcagcccatcaagacgctttgattttagccggaaatttgcttgcagcc
agtgcccccaggtccctgaggagttcctggaccttggaggaagaggccagcccagcggcc
accaggcaggaggaggtctggccggctctgggcgaccgctcgctggtgcccatggtggag
cagctcttctcccacctgctcaaggtgctcaacatctgcgcgcacgtcctggacgacgtg
gctcccggaccagcagtcaaggcagccttgccgtctctagcaaaccccccttctctgagc
ccgatccgacgaaagggaaaagagaaggaaccgggagagcaggcgtctgtgcccgtgagt
cccaagaaaggcggtgaggccagtccagccgctcgacagtcggatacctcagggcctgtc
gctgcaaacaagtcctcgtcactgggcagcttctgtcacctcccttcttacctcaaactg
cacgatgttctgaaagctactcacgcaaactataaggtcaccttggatctccagagcggc
actgagaagttccggggccttctatgctctgccttggatgtcctctcccaggtgctggag
gtggcgacgctgcaggacatcgggaagtgtgttgaggagatcctgggctacctgaaatcc
tgcttcagccgagaaccaacaatggcgactgtgtgcgtgcagcagttgttgaagacgctc
ttcgggacaaacttggcctcccagttcgacggcttggcctccacccccagcaagtgtcag
ggccgcgctcagcgcctgggctcctccagcgtgaggccgggcttgtaccactactgcttc
atggctccgtacacccacttcacccaggccctcgccgacgccagcctgaggaacttggtg
caggcggagcaggaccacgacgcctcagggtggtttgacgtactccagaaagtgtccacc
caactgaagacaaacctcaccagtgtcaccaagaaccgtgcggacaagactgctctgcat
aaccacatccgcctcttcgagcctctcgttataaaagctttaaaacagtacacgaccacc
acctccgtgcagttacagaagcaggttttggatttgctggcgcagctggttcagctacgg
gttaattactgtcttctggattctgatcaggtgtttattggatttgtgctgaagcagttt
gaatacattgaagtgggccagttcagggaatcagaggcaattattccaaacatctttttc
ttcctggtactgctgtcttatgaacgctatcattcaaaacagatcattggaattcctaaa
atcatccagctctgtgacggcatcatggccagtggcaggaaggctgtgacacacgccatt
ccggctctgcagcccatcgtccacgacctcttcgttttaagaggaaccaataaggctgat
gcaggaaaagagctcgagacccagaaggaggtggtggtgtccatgctgctgaggctcgtc
cagtaccatcaggtgctggagatgctcatcctggtcctgcagcagtgccacaaggagagc
gaggacaagtggaagcggctgtcgcggcaggtggccgacgtcatcctcccgatgctggcc
agacagcagatgcacatcgactcgcacgacgccctcggggtgttgaacacgctgtttgag
gtcctggccccctcctccctccgccccgtggacatgctgctgcggactatgtttctcact
ccagactcgctggccgctgtgagcaccgtccagctctgggtgtcgggcatcctggccatc
ctgagggtgctcatctcccagtcaacggaggacatcgtgctgtcccggattcaggagctc
tccttctccccgagcttgatctcctgcccgatgatcatccggctaagaggcgggaacagt
gactcagccccggaggagcacagcgaggggagacaggggaagaatctgccggaagaaacc
ttttcaaggtttctgctccagttggtgggcatcctcctggaagacatcgtcaccaagcgg
ctgcgggtggaagtgagcgagcagcagcataccttctattgccaggagctgggcacgctg
ctcatgtgcctgatccacatcttcaagtctgggatgttccggagagtcacggcagctgcc
tccagactgctcaccgacggcgcggacggcgccttcttcggcctggagcgcctgaacgcc
tgggtgcgcgccatggtccccacccacccggccctcgtgctgctctggtgtcagatcctg
ctgctcgtcagccacaccgactaccgctggtgggcagaggtgcagcagacccccagaaga
cgcagtctgtccagcaccaagtcgcttggtccccagatgtctggagaggacgaggactcc
gacgcggcttccagactgggaatgtgcagtagagaaatcgtacgaagaggggccctgatt
ctcttctgtgattacgtctgccagaacctgcatgactcggagcacttgacctggctcatc
gtgaaccacattcaggatctcatccacctgtcgcacgagccgccggtgcaggacttcatc
agcgccgtgcaccgcaacgccgcagccagcggccttttcatccaggccatccagtcccgc
tgtgagaacctctccgcccctaccacgctgaagaaaaccctgcagtgcctggaagggatc
cacctgagccagtcgggcgccgtgctgacgctgtacgtggacaagcttctgcgcacgccg
ttccgggtgctggcccgcatggtcgacaccctggcttgccgccgggtggaaatgcttttg
gccgcaaacttacagagcagcatggcccagttgcccgtggaggaactgacccgaatccag
gaataccttcagagcagcggcttagctcagagacaccaaaggctctcctccctgctggac
aggctgcgtctcgccaccgccccaggctcgcgtggtcccgctcctcgggtctcgtcccac
ccgctggacggggacgggcccctggcactggagacagtgagtcctgacaaagactggtac
ctccgtctggtgaaatcccagtgctggactcgctcagactccgcgctgctggaaggggcg
gagctggtgagccggatcccacccggcgacatgggcgccttcctgatgaacccggagttc
aacttgagcctgttagccccgtgcttgggcctgggcatgcgtgagatctctgccggccag
aagagtcccctgtttgaggcggcccgcgcggccaccctggaccgcgtgacgagcgtggtc
cagcagcttcccgctgtccatcaggttttccagccattcctgcccacagagcctgccgcc
tactggagcaagttggacgatctctttggggacgctgtgctgtatcggtccctgaccacc
ttggcccgggcgctggcccagtacctgctggtgctctccaaactgcccggccccctgcag
cttccccccgagaaggaggcggacaccgtgaggttcgtggtcatgactctcgaggccctg
gcgtggcatctggtccacgagcagatcccgctgagcctggacctgcaggccggcctggac
tgctgctgcctggccctgcagctgcccggcctctggagcgcgctctcctccccagagatg
gtgacccacgcctgctccctcatcctctgtgtccggttcatcttggaagccattgtcgtg
cagcctggggaccagcttcttagtccagagagaaaggcagacacgccaaaggctgccggc
gaggatgaagtggattcgaacacacagagccctccgtatcttggcgcggcctgcaggatg
gtggcggagatggtggcgagcctgccctcggtgttggcgctgggccgtgagcggagcagc
cgcacgccggccttcctcgcgcccgtgctcaggaacgtcatcgtcagcctggcccgcctg
cccctggtcaacagctacacgcgcgtcccacccctggtgtggaaactcgggtggtcgccc
agaccaggaggggactttggcacggcgttccctgagatccccgtggagttcctccaggag
aaggaagtcttcagggagttcatcttccgcatcaacacgctaggctggaccagccgtacc
cagtttgaggaaacgtgggccaccctgcttggtgtcctggtgactcagcccctcgtgatg
gagcaggaggagaacccaccagaggaggacacagagcggacgcagatccacgtcctggcc
gtgcaggccatcacctccctggtgctgagtgcgatgaccgtgcctgtggccggcaacccg
gccgtgagctgcttggagcagcagccccggaacaagccgctgaaagccctcgacaccagg
tttgggaggaagttgagcgtcatccggggggtcgtggagcaggaagtgcaagcgatggtt
tccaagcgcgagaacgtcgccacccaccacctgtaccaagcctgggaccccgtcccgtct
ctgtctcccgccacgacaggtgccctcatcagccatgacagactcctgctgcaggtcaac
cccgagcgggagctgggggacaccggctaccagctgggccaggtgtccatccactccgtg
tggctggggaacagcatcacgcccctgcgggaggaggagtgggatgaggaggaggaggag
gaggcggacgtccccgtgccatccccgcccacgtcgccgctcaactccaggaagcaccgc
gctggcgttgacatccactcctgctcgcagtttctgctcgagctctacagtcgctggatc
ctgccgtccagcgcggccaggaggacccccgtcatcctcatcagcgaagtggtccgatcc
cttctggtggtctctgacttgttcacggagcgcagccagtttgagatgatgtatctgacg
ctgacggagctgcggcgggcgcaccccccagaggacgagattctcctccagtacctggtg
cccgccacctgcaaggcggccgccgtcctcggcatggacaaggccgtggcagagccggtg
agccggctgctggagagcacgctcaggagcagccacctgcccagcaggatcggagccctg
cacggcgccctctacgtgctggagtgcgacctcctggacgacacggccaagcagctcatc
ccggccatcagcgactatctcctctccaacctccgaggcgtggcccactgtgtgaacgtg
cacagccagcagcacgtgctggtgatgtgcgccacggccttctacctgatcgagaactac
cctctggacgtcgggcccgagttctctgcgtccgtcatacagatgtgtggcgtgatgctg
tccggcagcgaggagtccaccccgtccatcgtctaccactgcgtcctgaggggcctggag
cgcctcctgctctccgagcagctctcccggctggacgcggagtccctggtcaagctgagc
gtggacagagtgaacgcgcacagcccgcaccgcgccatggcggccctgggcctgatgctc
acctgcatgtacacgggaaaggagaagatcagcccaggcagaagctccgaccccagccct
gccgcccccgacagcgagtctgtgattgtggccatggagcgtgtgtctgttctcttcgac
aggatcagaaaggggtttccctgtgaagccagagtggtggccaggatcctgccccagttc
ctggatgacttcttcccgccccaggacgtcatgaacaaggtcattggggagtttctgtcc
aaccagcagccgtacccgcagttcatggccactgtcgtgtaccaggtgttccagacgctg
cacagcaccggacagtcgtccatggtccgggactgggtcatgctgtccctctccaacttc
acccagaggaccccagtcgccatggccgtgtggagcctctcctgcttcttcgtcagcgcc
tccaccagcccgtgggtctcggccatcctcccgcacgtcgtcagcaggatgggcaagctg
gaacaggtggacgtgaacctcttctgcctggtggccacggacttctacagacaccagata
gaggaggagcttgaccgcagggccttccagtccgtgttcgaggtggtcgccgtgccagga
aacccctatcaccgactgctgacatgtttgcaggatgtccacagggtggctgcatgctga

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