KEGG   Sus scrofa (pig): 397247
Entry
397247            CDS       T01009                                 
Symbol
NECTIN1
Name
(RefSeq) nectin-1 precursor
  KO
K06081  poliovirus receptor-related protein 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03266  Virion - Herpesvirus
ssc04514  Cell adhesion molecules
ssc04520  Adherens junction
ssc05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03266 Virion - Herpesvirus
    397247 (NECTIN1)
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    397247 (NECTIN1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04520 Adherens junction
    397247 (NECTIN1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    397247 (NECTIN1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:ssc04515]
    397247 (NECTIN1)
   04090 CD molecules [BR:ssc04090]
    397247 (NECTIN1)
Cell adhesion molecules [BR:ssc04515]
 Immunoglobulin superfamily
  Nectin family
   397247 (NECTIN1)
CD molecules [BR:ssc04090]
 Proteins
  397247 (NECTIN1)
SSDB
Motif
Pfam: C2-set_2 V-set Ig_3 Ig_2 ig I-set
Other DBs
NCBI-GeneID: 397247
NCBI-ProteinID: NP_001001262
Ensembl: ENSSSCG00000015124
UniProt: Q9GL76
Structure
Position
9:complement(46823552..46891564)
AA seq 515 aa
MARMGLAGAAGRWWGLALGLTAFFLPGAHTQVVQVNDSMYGFIGTDVVLHCSFANPLPGV
KITQVTWQKATNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEG
VYICEFATFPAGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGKDDKVLVATCTSANGKPP
SVVSWETHLKGEAEYQEIRNPNGTVTVISRYRLVPSREDHRQSLACIVNYHMDRFRESLT
LNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL
FFRGPINYSMAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHGRRAGQVPTAIIGGV
VGSILLVLFVVGGIVVALCRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPE
DSDDEKKAGPLGGSSYEEEEEEEGGGGERKVGGPHPKYDEDAKRPYFTVDEAEARQDGYG
DRTLGYQYDPEQLDLAENMVSQNDGSFISKKEWYV
NT seq 1548 nt   +upstreamnt  +downstreamnt
atggctcggatggggcttgcgggcgccgctggacgctggtggggactcgctttaggtttg
accgccttcttcctcccaggtgcccacacccaggtggtccaggtgaacgactccatgtat
ggtttcatcggcacagatgtggtgctgcactgcagcttcgccaaccctctgcctggcgtg
aagatcacccaggtcacgtggcagaaggccaccaatggctccaagcagaacgtggccatc
tacaaccccgccatgggcgtctcggtgctggccccctaccgggagcgtgtggagttcctg
cgaccctccttcactgacggcaccatccgcctctcccgcctggagctggaggacgagggc
gtctacatctgcgagtttgccaccttccctgcaggcaatcgagagagccagctcaacctc
actgtgatggccaaacccaccaactggatagagggcacccaggcggtgcttcgagccaag
aaagggaaggatgacaaggtcctggtggccacctgcacctcggccaatgggaagcctccc
agtgtggtgtcctgggaaacgcacctgaagggcgaggcagagtaccaggagatccggaac
cccaatggcacagtgactgtcatcagccgctaccgcctggtgcccagccgggaagaccac
cggcagtccctggcctgcatcgtcaactaccacatggaccgcttccgggagagcctcacc
ctcaatgtgcagtatgagcccgaggtgaccatcgaggggtttgatgggaactggtacctg
cagcgaatggatgtgaagctgacgtgcaaagctgatgccaaccccccagccaccgagtac
cactggaccacgctgaatggctcccttcccaagggtgtggaggcccagaatagaacgctc
ttcttcaggggacctatcaactacagcatggcaggaacctacatctgtgaggccaccaac
cccatcggtacccgctcgggccaggtggaggtcaatatcacagagttcccctacaccccg
tctcctcccgaacacggccggcgtgcagggcaggtgcccacggccatcattgggggcgtg
gtgggcagcatcctgctggtgctatttgtggtcggcgggatcgtggtggcactgtgtcgg
cgccgtcacaccttcaagggtgactacagcaccaagaagcacgtatacggcaatggctac
agcaaggcgggcatcccccagcaccacccgcccatggcccagaacctgcagtaccccgag
gactcggacgacgagaagaaagccggtcccctgggtggaagcagctacgaggaggaagag
gaggaggagggcggagggggtgagcgcaaggtgggtggcccccaccccaaatacgacgag
gatgccaagcggccctacttcaccgtggatgaggcagaggcccgtcaggacggctacggg
gaccggactctgggctaccagtacgaccctgagcagctggacttggccgagaacatggtt
tctcagaacgacgggtctttcatttccaagaaggagtggtacgtgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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