KEGG   Sus scrofa (pig): 397383
Entry
397383            CDS       T01009                                 
Symbol
TRIM50
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM50
  KO
K12024  tripartite motif-containing protein 50/73/74
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssc04121]
    397383 (TRIM50)
Ubiquitin system [BR:ssc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    397383 (TRIM50)
SSDB
Motif
Pfam: SPRY PRY zf-RING_UBOX zf-B_box zf-C3HC4_4 zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 zf-RING_5 U-box Prok-RING_4 zf-RING_4 zf-Nse Sina_RING CcmH DUF1198 Baculo_IE-1 zf-RING_6 zf-ANAPC11
Other DBs
NCBI-GeneID: 397383
NCBI-ProteinID: NP_999351
Ensembl: ENSSSCG00000007703
UniProt: Q865W2
Position
3:complement(10647690..10655345)
AA seq 486 aa
MAWQVSVPELEDRLQCPVCLEVFKEPLMLQCGHSYCKGCLLSLSRHLDSELRCPVCRQEV
DSSSSPPNVSLARVIEALQLPGDPEPQVCTHHRNPLSLFCEKDQELICGLCGLLGSHQHH
RVTPVSTVYSRMKEELAALISDLKQEQKKVEEQVAKLVNNRTRIVNESDVFSWVIRREFQ
ELHHLVDEEKARCLEGVEGHTRGLVASLDMQLEQARGAQERLAQATCMLEQFGNESHYEF
IRYHSTASSAELQQARLLEGAFSPISFKPGLHQADIKLTVWKRLFRKVLPAPESLKLDPT
TAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSDW
RLGVIKGTASRKGKLNKSPEHGVWLIGLKEGRVYEAFSCPRVPLPVAGHPHRIGVYLHYE
QGELTFFDADRPDDLRLLYTFQADFQGKLYPILDTCWHERGSNSLPMVLPLPSGPGHLTP
SQPTKL
NT seq 1461 nt   +upstreamnt  +downstreamnt
atggcgtggcaggtgagtgtgcccgagctggaggaccgcctgcagtgccccgtctgcctg
gaggtcttcaaggagcccctgatgctgcagtgcggccactcttactgcaagggctgcctg
ctgtccctgtcccgccacctggactcggagctgcgctgccctgtgtgccggcaggaggtg
gactccagcagctccccgcccaacgtctccctggcacgtgtgatcgaagccctgcagctc
cccggggacccggagccccaggtctgcacccatcaccggaacccactcagcctcttctgc
gagaaggaccaggagcttatctgcggcctctgcggcctgctgggctcccaccagcaccac
cgggtcacccccgtctccactgtctatagccgcatgaaggaggagctagcagccctcatc
tccgacctgaagcaggagcagaagaaggtggaagaacaagtcgccaaactggtgaacaac
aggacccggattgtcaacgagtctgatgtcttcagctgggtgatccgccgcgagttccag
gagctgcaccacctggtggacgaggagaaggcccgctgcctagagggggtagagggtcac
acccgtggcctcgtggcctcgctggacatgcaactggagcaggcccggggcgctcaggag
cggctggcccaggccacgtgtatgctggagcagtttgggaacgagagtcactacgagttc
atccggtaccactccacggcctccagcgcagagctccagcaggcccggctcttggaaggt
gcattcagccccatctccttcaaaccaggcctgcaccaggccgacatcaagctgacggtg
tggaaaaggctcttccgaaaggttctgccagccccagagtccctcaagctggatcccacc
acggcccacccgctcctggagctctccaagggcaacacagtggtgcagtgcgggctcctg
gcccagcggcgcgccagccagcccgagcgcttcgactacagcacgtgcgtcctggccagc
aggggcttctcctgcggccgccactactgggaggtggtggtgggcagcaagagcgactgg
cgcctgggggtcatcaagggcacggccagtcgcaagggcaagctgaacaagtccccagag
cacggcgtgtggctcatcggcctgaaggagggtcgggtgtacgaggccttcagctgcccg
cgggtgcccctgcccgtggccggccacccccaccgcatcggcgtctacttgcactacgag
cagggggagctcaccttcttcgatgctgaccgccccgatgacctgcggctgctctacacg
ttccaggccgacttccagggcaagctctaccccatcctggacacatgctggcacgaacgg
ggtagcaactccctgcccatggtgctgcccctgcccagcgggccaggccacctcaccccc
tcgcagcccaccaagctctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (20)   
   Pfam (20)   
All databases (43)   

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