KEGG   Sus scrofa (pig): 397418
Entry
397418            CDS       T01009                                 
Symbol
UBA52
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03010  Ribosome
ssc04120  Ubiquitin mediated proteolysis
ssc04137  Mitophagy - animal
ssc04140  Autophagy - animal
ssc05012  Parkinson disease
ssc05022  Pathways of neurodegeneration - multiple diseases
ssc05167  Kaposi sarcoma-associated herpesvirus infection
ssc05171  Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    397418 (UBA52)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    397418 (UBA52)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    397418 (UBA52)
   04137 Mitophagy - animal
    397418 (UBA52)
 09160 Human Diseases
  09172 Infectious disease: viral
   05171 Coronavirus disease - COVID-19
    397418 (UBA52)
   05167 Kaposi sarcoma-associated herpesvirus infection
    397418 (UBA52)
  09164 Neurodegenerative disease
   05012 Parkinson disease
    397418 (UBA52)
   05022 Pathways of neurodegeneration - multiple diseases
    397418 (UBA52)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:ssc03011]
    397418 (UBA52)
   04121 Ubiquitin system [BR:ssc04121]
    397418 (UBA52)
Ribosome [BR:ssc03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    397418 (UBA52)
  Archaea
    397418 (UBA52)
Ubiquitin system [BR:ssc04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   397418 (UBA52)
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 OTU1_UBXL Dsc3_N
Other DBs
NCBI-GeneID: 397418
NCBI-ProteinID: NP_999376
Ensembl: ENSSSCG00000013907
UniProt: P63053
Structure
Position
2:complement(59238802..59241512)
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKVK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt
gataccattgagaatgtcaaagctaaaatccaggataaggagggcatcccacctgaccag
cagcgtctgatttttgctggcaaacagctggaggatggccgcactctctcagactacaat
atccagaaagagtccaccctgcacttggtgcttcgtctgcgaggtggcatcatcgagccc
tccctccgccagctcgctcagaaatacaactgcgacaagatgatctgccgcaagtgttat
gctcgcctgcatccccgcgcggtgaactgccgcaagaagaagtgtggccacaccaacaac
ctgcgccccaagaagaaggtcaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (8)   
   KEGG PATHWAY (8)   
Genome (1)   
   KEGG GENOME (1)   
Gene (364)   
   KEGG ORTHOLOGY (1)   
   RefGene (359)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (16)   
   RefSeq(nuc) (4)   
   GenBank (6)   
   EMBL (6)   
3D Structure (4)   
   PDB (4)   
Protein domain (10)   
   Pfam (10)   
All databases (412)   

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