KEGG   Sus scrofa (pig): 397460
Entry
397460            CDS       T01009                                 
Symbol
TNC
Name
(RefSeq) tenascin precursor
  KO
K06252  tenascin
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04151  PI3K-Akt signaling pathway
ssc04510  Focal adhesion
ssc04512  ECM-receptor interaction
ssc05165  Human papillomavirus infection
ssc05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    397460 (TNC)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    397460 (TNC)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    397460 (TNC)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    397460 (TNC)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    397460 (TNC)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ssc00536]
    397460 (TNC)
Glycosaminoglycan binding proteins [BR:ssc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   397460 (TNC)
SSDB
Motif
Pfam: fn3 Fibrinogen_C EGF_2 EGF_Tenascin Pur_ac_phosph_N NDNF EGF DUF4998 fn3_2 hEGF
Other DBs
NCBI-GeneID: 397460
NCBI-ProteinID: NP_999395
Ensembl: ENSSSCG00000005494
UniProt: Q29116
Position
1:complement(255533235..255630381)
AA seq 1746 aa
MGVVTRLLVGTFLASLALPAQGGVLKKVIRHKRQTGVNVTLPEESQPVVFNHVYNIKLPV
GSQCSVDLESASGDKDLAAPSEPSESVQEHTVDGENQIVFTHRINIPRRACGCAAAPDVK
ELLSRLEELENLVSSLREQCTSGAGCCLQPAEGRLDTRPFCSGRGNFSTEGCGCVCEPGW
KGPNCSEPECPSNCHLRGQCVDGQCVCNEGFTGEDCSQLACPSDCNDQGKCVNGVCVCFE
GYSGVDCSRETCPVPCSEEHGRCVDGRCVCQEGFAGEDCNEPLCLHNCHGRGRCVENECV
CDEGFTGEDCGELICPKDCFDRGRCINGTCYCDEGFEGEDCGRLACPHGCRGRGRCEEGQ
CVCDEGFAGADCSERRCPSDCHNRGRCLDGRCECDDGFEGEDCGELRCPGGCSGHGRCVN
GQCVCDEGRTGEDCSQLRCPNDCHGRGRCVQGRCECEHGFQGYDCSEMSCPHDCHQHGRC
VNGMCVCDDGYTGEDCRELRCPGDCSQRGRCVDGRCVCEHGFAGPDCADLACPSDCHGRG
RCVNGQCVCHEGFTGKDCGQRRCPGDCHGQGRCVDGQCVCHEGFTGLDCGQRSCPNDCSN
WGQCVSGRCICNEGYSGEDCSQVSPPKDLIVTEVTEETVNLAWDNEMRVTEYLIVYTPTH
EDGLEMQFRVPGDQTSTTIRELEPGVEYFIRVFAILENKKSIPVSARVATYLPTPEGLKF
KSIKETSVEVEWDPLDIAFETWEIIFRNMNKEDEGEITKSLRRPETTYRQTGLAPGQEYE
ISLHIVKNNTRGPGLKRVTTTRLDAPSQIEAKDVTDTTALITWFKPLAEIDGIELTYGIK
DVPGDRTTIDLTHEENQYSIGNLKPDTEYEVSLISRRADMSSNPAKETFTTGLDAPRNLR
RISQTDNSITLEWRNGKAAADTYRIKYAPISGGDHAEVEVPRSPQTTTKATLTGLRPGTE
YGIGVSAVKGDKESDPATINAATDLDPPKDFRVSELKESSLTLLWRTPLAKFDRYRLNYG
LPSGQPVEVQLPRNATSYILRGLEPGQEYTILLTAEKGRHKSKPARVKASTAGEPEIGNL
SVSDITPESFSLSWTATEGAFETFTIEIIDSNRFLETMEYNISGAERTAHISGLRPGNDF
IVYLSGLAPGIQTKPISATATTEAEPEVDNLLVSDATPDGFRLSWTADEGVFDSFVLKIR
DTKKQSEPLEITLLASERTRDITGLREATEYEIELYGISSGKRSQPVSAIATTAMGSPKE
ITFSDITENSATVSWMVPTAQVESFRITYVPITGGAPSVVTVDGTKTQTRLLRLLPGVEY
LVSVIAVKGFEESEPVSGTLTTALDGPSGLVTANITDSEALAMWQPAIAPVDHYVISYTG
DRVPEITRTVSGNTVEYALTNLEPATEYTLRIFAEKGPQKSSTITTKFTTDLDSPRDLTA
TEVQSETALLTWRPPRASVTGYLLVYESVDGTLKEVVVGPETTSYSLSGLSPSTHYTARI
QALNGPLRSKMSQTVFTTIGLLYPFPRDCSQAMLNGDTTSGLYTIYVNNDKAQKLEVFCD
MTSDSGGWIVFLRRKNGREDFYRNWKAYAAGFGDLKEEFWLGLDALSKITAQGQYELRVD
LRDHGETAYAVYDRFSVGDARTRYKLKVEGYSGTAGDSMAYHNGRSFSTFDKDTDSAITN
CALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKLRPSNFRNLE
GRRKRA
NT seq 5241 nt   +upstreamnt  +downstreamnt
atgggggtcgtgactcggctgctggtgggcaccttcctggcttcgctcgccctccctgcc
caaggcggcgtcctcaagaaggtcatccgacacaagcgacagacgggggtaaatgtcacc
ctcccagaggaaagccagccggtggtgtttaatcatgtctacaacatcaagctgcccgtg
gggtcccagtgctcagtggatctggaatcagccagcggggacaaagacttggccgcgccg
tcagagcccagcgaaagcgtccaggagcacacagtggacggggaaaaccagatcgtcttc
acacatcgcatcaacatcccccgccgggcctgtggttgtgccgccgcaccggatgtcaag
gagcttctgagcagactggaggagctggagaacctggtgtcttccctgcgggagcagtgc
acctcgggtgcaggctgctgcctccagcctgccgaaggccgcctggacaccaggcccttc
tgcagtggccggggcaacttcagcactgaaggatgtggctgtgtgtgtgaacctggctgg
aaaggccccaactgctctgagccagaatgtccaagcaactgtcaccttcgaggccagtgc
gtggatgggcagtgtgtgtgcaatgagggcttcactggggaagattgcagccagctggcc
tgtcccagcgactgcaatgaccagggcaagtgcgtgaacggcgtctgcgtctgctttgaa
ggctactcaggagtggactgcagccgagagacctgcccggtgccctgcagcgaggagcac
ggccggtgcgtggacggccggtgcgtgtgccaggaaggctttgccggcgaggactgcaat
gagcccctgtgtctccacaactgccacggccgtggacgctgcgtggagaatgagtgcgtg
tgcgacgaaggcttcacgggcgaggactgcggtgagctcatctgccccaaagactgcttc
gaccgtggccgctgcatcaacggcacctgctactgcgacgagggcttcgagggcgaggac
tgcggccggctcgcctgcccccacggctgccgtggccgtggccgctgcgaggagggccag
tgcgtgtgtgatgagggcttcgcgggggcggactgcagcgagaggcgctgtccctctgac
tgtcacaaccgcggccgctgcctggacgggcgctgcgagtgcgacgacggcttcgagggt
gaggactgcggtgagctccgctgtcccgggggctgcagcggccacgggcgctgcgtcaac
gggcagtgcgtgtgcgacgagggccgcaccggggaagactgcagccagctacgctgcccc
aacgactgtcacggccgcggccgctgcgtgcagggacggtgcgagtgcgagcacggcttc
cagggctacgactgcagcgaaatgagctgcccccatgactgtcaccagcatgggcgctgc
gtgaacggcatgtgcgtctgtgatgacggctacacgggggaggactgccgcgagctgcgc
tgccctggggactgcagccagcggggccgctgcgtggatgggcggtgcgtgtgtgagcac
ggcttcgccggccccgactgcgcagatctcgcctgccccagcgactgccacggccggggc
cgctgtgtgaacggccagtgtgtgtgccacgagggcttcacgggcaaagactgcgggcag
cgaaggtgtcctggcgactgccacggccagggccgctgcgtggacggccagtgcgtgtgc
cacgagggcttcacagggctggactgtgggcagcgctcctgccccaacgactgcagcaac
tgggggcagtgtgtctctggccgctgcatctgcaacgagggctacagtggagaagactgc
tcccaggtgtcccctcccaaagacctcatcgtgacagaggtgacggaagaaaccgtaaac
ctggcctgggacaatgagatgcgggtcacagagtacctcattgtgtacacgcccacccat
gaggatggcctggaaatgcagttcagagtccctggagaccagacgtccaccaccatccgg
gagttagagcctggtgtggagtacttcatccgtgtgtttgcaatactggagaacaagaag
agcattcctgtcagcgccagggtggccacttacctgcctacacctgaaggtttaaaattc
aagtccatcaaagagacatctgtggaagtggagtgggatcctctggacattgctttcgaa
acgtgggagatcatcttccggaatatgaataaagaagatgagggagaaatcaccaaaagc
ctgcggaggccagagaccacataccggcaaactggcctcgctcctgggcaagagtatgag
atatctctgcacatcgtgaaaaacaacacccggggccccggcctgaagagggtgaccacc
actcgtttggatgcccccagccagatcgaagcgaaagatgtcacggacaccaccgctctg
atcacctggttcaagcccctggccgagatcgacggcatcgagctcacgtatgggatcaaa
gacgtgccaggcgaccgcaccaccatcgacctcacacatgaggagaaccagtactccatc
gggaacctgaagccggacacggagtatgaggtgtcgctcatctcccgtagggccgacatg
tccagcaaccctgccaaagagaccttcacaacaggcctggatgcccccaggaatctccgc
cgcatctcccagacagacaacagcatcaccctggagtggaggaacggcaaggcggccgcc
gacacttacagaattaagtacgcgcccatctctggaggtgaccacgccgaggttgaagtc
cccaggagcccacaaaccacaaccaaggccacactcacaggtctgaggccaggaactgaa
tatgggattggagtgtctgctgtgaagggggacaaggagagtgacccagccaccatcaac
gcagccacagacttggacccgcccaaggactttcgggtttctgagcttaaggagagcagc
ctgaccctgctctggaggacgccgttggccaagtttgaccgttaccgcctcaactacggt
ctgccctcgggccagccagtggaggtgcagctgcccagaaacgctacctcctacatcctg
agaggtctggagcccgggcaggaatacaccatcctcctcacagcagagaagggcaggcac
aagagcaagcccgcacgggtcaaggcatccacagctggagaaccggaaattggaaacctc
agtgtttccgacatcactcctgagagcttcagtctctcctggacagctaccgagggggcc
ttcgagacctttaccattgaaattattgattccaataggttcctggagacgatggaatat
aatatctctggtgctgaacgaactgcccacatttcagggctccgccccggtaatgatttc
attgtctacctctctggcctcgctcccggcatccagaccaaacccatcagtgccacagcc
accacagaagccgagccggaagttgacaaccttctggtttcagatgccaccccagatggt
ttccgtctgtcctggacagctgatgaaggggttttcgacagttttgttctcaaaatcaga
gataccaaaaagcagtctgagccactggaaataaccctacttgcctccgaacgtaccagg
gacataacaggtctcagagaagccactgaatacgaaattgaactctatggaataagcagt
ggaaagcggtcccagccagtcagtgctatagcgacaacagccatgggctccccaaaggaa
atcactttctcagacatcactgaaaactcagccactgtcagctggatggtacccactgcc
caggtcgagagcttccggatcacctatgtgcccattacaggaggtgccccctcagtggta
actgtggacgggactaagactcagaccaggctgctgagactcttacctggagtggagtac
ctggtcagcgtcatcgccgtgaagggctttgaggaaagcgagcctgtctccgggacgctc
accacggctctggatggcccatctggcctggtgacagccaacatcaccgactcggaagcc
ttggccatgtggcagccggccatcgcccctgtggatcattatgtcatctcctacacaggg
gacagagtgccagaaattacccgcacggtgtccgggaacacggtggagtacgcgctgacc
aacctggagcctgccaccgaatacacgctgaggatctttgcagagaaagggccccagaag
agctcaaccatcaccaccaagttcacgacagatctcgattctccaagagacctgactgct
acagaggttcagtcggaaacagcccttctcacctggagacctccccgggcatccgtcact
ggttatctactggtgtatgaatctgttgacggtacactcaaggaagtcgttgtgggtcca
gagaccacctcttacagcctgtcagggctgagcccatccacccactacacagccaggatc
caggcactgaatgggcccctgaggagcaagatgtcccagaccgtcttcaccacaattgga
ctcctgtacccattccccagggactgctcccaagcaatgctgaatggagacacgacctct
ggcctctacaccatttacgtgaacaacgacaaagcccagaagctggaagtcttctgtgac
atgacctctgacagcggtggatggatcgtgttcctgagacgcaaaaacggacgcgaggat
ttctatcgaaactggaaggcctacgctgctggatttggggacctaaaagaagaattctgg
cttggactggatgcgctgagcaaaatcacagcccaagggcagtacgagctccgggtggac
ctgcgggaccacggggagacagcctatgccgtctatgacagattcagcgtgggagacgcc
cggactcgctacaagctgaaggtggaggggtacagcgggacagcaggtgactccatggcc
taccacaacggcagatccttctccaccttcgacaaggacacggactcggccatcaccaac
tgcgccctgtcctacaagggggctttctggtacaagaactgccaccgtgtcaacctgatg
gggagatacggggacaacagccacagtcagggtgtcaactggttccactggaagggccat
gaatattcaatccagtttgctgagatgaagctgagacccagcaacttccggaatctggaa
ggcaggcgcaaacgcgcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (173)   
   KEGG ORTHOLOGY (1)   
   RefGene (168)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (21)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (19)   
DNA sequence (23)   
   RefSeq(nuc) (19)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (235)   

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