KEGG   Sus scrofa (pig): 397506
Entry
397506            CDS       T01009                                 
Symbol
RAG1
Name
(RefSeq) V(D)J recombination-activating protein 1
  KO
K10628  V(D)J recombination-activating protein 1 [EC:2.3.2.27]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04068  FoxO signaling pathway
ssc05340  Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04068 FoxO signaling pathway
    397506 (RAG1)
 09160 Human Diseases
  09163 Immune disease
   05340 Primary immunodeficiency
    397506 (RAG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssc04121]
    397506 (RAG1)
Enzymes [BR:ssc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     397506 (RAG1)
Ubiquitin system [BR:ssc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    397506 (RAG1)
SSDB
Motif
Pfam: RAG1 RAG1_imp_bd zf-RAG1 zf-C3HC4_2 zf-C3HC4 zf-RING_6 zf-RING_10
Other DBs
NCBI-GeneID: 397506
NCBI-ProteinID: NP_001116656
Ensembl: ENSSSCG00000026145
Vega: OTTSUSG00000003503
UniProt: Q867B5 A0A481A9F8
Position
2:complement(24565447..24573853)
AA seq 1043 aa
MAVSLPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKAPEKAQTEKQDSSEGKPSLE
QSPAVLDKPGGQKSALPQPAFKPHPKFLKESHEDGKARDKAIHQANLRRLCRICGNSFNT
TGHKRRYPVHGPVDGKTQVLLRKKEKRATSWPDLIAKVFRIDVKADVDSIHPTEFCHNCW
SFMHRKFSSTPCEVYSPRNAAMEWHPHTLNCDICHIARRGLKRKSQQPNMQLSKKLKTVI
DRARQARQRKRRAQARISSKELMKKIANCGQIHLSPKLLAVDFPAHFVKSISCQICEHIL
ADPVETSCKHVFCRICILRCLKVMGSSCPSCHYPCFPTDLESPVKSFLSILNTLMVKCPA
KECNEEISLEKYNHHISSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
FADKEEGGDVKSVCLTLFLLVLRARNEHRQADELEAIMRGQGSGLQPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSSTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDSALVSALMDMEEDILEGMRAQDLDDYLNGPFTVVVKE
SCDGMGDVSEKHGSGPVVPEKAVRFSFTVMKITIAHGSQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSQLMLEMGGILRTFKFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHETVDELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEAYKNPHASKEERKRWQATLDKHL
RKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKYYEMEDVLKHHWLYTSKYLQKFMNAHKAFKNSGFTIN
LQRSSGDTLDLENSPESQDLMEF
NT seq 3132 nt   +upstreamnt  +downstreamnt
atggctgtctctttgccacccactctgggactcagttccgccccagatgaaatccagcac
ccccacattaaattttcagaatggaaatttaagctattcagggtgagatcctttgaaaag
gcacctgaaaaggctcaaacggaaaagcaggattcctccgaggggaaaccctcgctggag
caatctccagcagtcctggacaagcctggtggtcagaagtcagccctgcctcaaccagca
ttcaagccccatccaaagtttttaaaggaatcccacgaagatgggaaagcaagagacaaa
gccatccaccaagccaacctgagacgtctctgccgcatctgtgggaattctttcaacacc
actgggcacaagagaaggtatccagtccacgggcctgtggatggtaaaacccaagtcctt
ttacggaagaaggaaaagagggccacgtcctggccagacctcattgccaaagttttccgg
atcgatgtgaaggcagatgttgactcgatccaccccactgagttctgccataactgctgg
agcttcatgcacaggaagtttagcagcaccccatgtgaggtttactccccaaggaatgca
gccatggagtggcacccccacaccctaaactgtgacatctgccacattgcacgtcgggga
ctcaagaggaagagtcagcagccaaacatgcagctcagcaaaaaactcaaaactgtgatt
gaccgagcgagacaagcccgtcagcgcaagaggagagctcaggccaggatcagcagcaag
gaactgatgaagaagatcgccaactgcggtcagatacatcttagccccaagctcctggca
gtggacttcccggcgcactttgtgaaatctatctcctgccagatttgtgaacacatcctg
gccgacccggtggagaccagctgcaagcatgtgttttgcaggatctgcattctcaggtgc
ctcaaagtcatgggcagcagttgtccctcttgccactatccctgttttcctactgacctg
gagagtccagtgaagtcttttctgagcatcttgaataccctgatggtgaaatgcccagca
aaggagtgcaacgaggagatcagcttggaaaaatataatcaccatatctcaagccacaag
gagtcgaaggagacatttgtgcatattaataaagggggccggccccgccagcatctcctg
tccctgacgcggagggctcagaaacaccgtctgagggagctcaagctgcaagtcaaggcc
ttcgccgacaaagaagaaggtggcgatgtgaagtcagtgtgcctgaccttgttcctgcta
gtgctgagggcgaggaatgagcacagacaagctgacgagctggaggccatcatgcgaggc
cagggctccggcctgcagcctgctgtttgcttggccatccgcgtcaacaccttcctcagc
tgcagccagtaccacaagatgtacaggactgtgaaggccatcacgggcaggcagattttc
cagcctttgcatgcccttcggaatgcggagaaggtccttctgcccggctaccaccccttc
gagtggcagccacctctgaagaatgtgtcttccagcacagacgtgggcattattgatggg
ctgtctggactctcctcctctgtggacgattacccagtggacaccattgccaagcgcttc
cgctatgactcggctctggtgtccgctctcatggacatggaagaagacatcctggagggt
atgagagcccaagaccttgacgactacctgaatggccccttcactgtggtggtgaaggag
tcttgtgatgggatgggagacgtgagtgagaagcacggcagtgggccggtcgtgccggaa
aaggccgttcggttttccttcacagtcatgaaaatcaccatcgcacacgggtcacagaac
gtgaaggtgtttgaggaagccaagcctaactctgaactatgctgcaagcccttgtgcctc
atgctggccgacgaatccgaccatgagaccctgacggccatcctgagccctctcattgcc
gagagggaggccatgaagagcagccagctaatgctggagatgggaggcatcctccggact
ttcaagttcatcttcaggggcaccggatatgatgagaaactggtccgggaagtggaaggc
cttgaggcttctggctctgtctacatctgtaccctctgtgatgccacccgcctggaagcc
tctcaaaatctggtcttccactccataaccagaagccacgcggagaatttggagcgctat
gaggtctggcgttccaacccataccatgagacggtggatgaacttcgggaccgggtgaaa
ggggtctcggccaaacccttcattgagacggtgccttccatagatgccctccactgtgac
attggcaatgcagccgagttttacaagattttccagctcgagataggggaggcgtataag
aacccccatgcctccaaggaggaaaggaagagatggcaggcgaccttggacaagcacctc
cgcaagaagatgaatctgaagcccatcatgagaatgaatggcaactttgccaggaagctc
atgaccaaagagactgtggaagcagtctgtgagttaattccctccgaggagaggcatgaa
gctctgagggaactgatggacctttacctgaagatgaagcccgtctggcgatcatcatgc
cctgctaaagagtgcccggaatccctctgccagtatagtttcaattcacagcgttttgct
gagctcctctccaccaagttcaagtacagatatgagggcaaaatcaccaattattttcac
aagacactggcccacgtcccggaaattatcgagagggacggctccattggggcatgggct
agcgagggaaatgagtctgggaacaagctgttcaggcgcttccgaaaaatgaatgccagg
cagtccaagtactatgaaatggaagatgttttgaaacatcactggttgtacacctccaaa
tacctgcagaagtttatgaatgctcataaagcatttaaaaactcagggtttaccataaac
ttgcagagaagctcaggggacacattagacctagagaactctccagaatctcaagatttg
atggaattttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (49)   

Download RDF
DBGET integrated database retrieval system