KEGG   Sus scrofa (pig): 397524
Entry
397524            CDS       T01009                                 
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04137  Mitophagy - animal
ssc04141  Protein processing in endoplasmic reticulum
ssc05014  Amyotrophic lateral sclerosis
ssc05022  Pathways of neurodegeneration - multiple diseases
ssc05134  Legionellosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    397524 (VCP)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    397524 (VCP)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05134 Legionellosis
    397524 (VCP)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    397524 (VCP)
   05022 Pathways of neurodegeneration - multiple diseases
    397524 (VCP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    397524 (VCP)
   03009 Ribosome biogenesis [BR:ssc03009]
    397524 (VCP)
   04131 Membrane trafficking [BR:ssc04131]
    397524 (VCP)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    397524 (VCP)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     397524 (VCP)
Ribosome biogenesis [BR:ssc03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    397524 (VCP)
Membrane trafficking [BR:ssc04131]
 SNARE
  SNARE associated proteins
   Others
    397524 (VCP)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    397524 (VCP)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   397524 (VCP)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 AAA_14 RNA_helicase AAA_28 Vps4_C nSTAND3 AAA_18 Parvo_NS1 Mg_chelatase AAA_17 ATPase_2 IstB_IS21 AAA_7 ATPase DUF815 Bac_DnaA ABC_tran AAA_24 NB-ARC ResIII TsaE Zeta_toxin NACHT Sigma54_activat Viral_helicase1 SLFN-g3_helicase bpMoxR KAP_NTPase Zot UFD1 DUF3944
Other DBs
NCBI-GeneID: 397524
NCBI-ProteinID: NP_999445
Ensembl: ENSSSCG00000005300
UniProt: P03974
Position
1:complement(235854532..235869712)
AA seq 806 aa
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGSVYTEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcctccggagctgattccaaaggtgatgatttatcaacagccattcttaaacagaag
aatcgtcccaatcggttaattgttgatgaagccatcaatgaggacaacagtgtggtatct
ttgtcccagcccaagatggatgagctgcagttgttccgaggtgacacagtgttgctgaaa
ggaaagaagaggcgggaagctgtgtgcattgtgctttctgatgacacatgttctgatgag
aagattcgaatgaatagagttgttcggaataaccttcgcgtacacctaggggatgtcatc
agcatccagccatgccctgatgtgaagtacggcaaacgtatccatgtactacccatcgat
gacacagtggaaggcatcactggcaatctctttgaggtataccttaagccatacttcctg
gaagcttatcgacccatccggaaaggagatattttccttgttcggggtgggatgcgtgca
gtagagttcaaagtagtggagacggatcccagtccttactgcattgttgcaccagacaca
gtgatccactgtgaaggagaacctatcaaacgagaggatgaagaagagtccttgaacgaa
gtgggctatgatgacattggtggctgcaggaaacagctagctcagataaaggagatggtg
gagctgcccttgagacatcctgccctctttaaggcaattggtgtgaagcctcctcgggga
atcctgctctatggacctcccgggactgggaagaccctgattgctcgagctgtggcaaat
gagactggagccttcttcttcttgatcaatggtcctgagatcatgagcaagttggctggt
gagtctgagagcaaccttcgtaaagcctttgaggaggctgagaagaatgctccggctatc
attttcattgatgagttggatgccatcgctcccaagagagagaaaacccatggggaggtg
gagcggcgtattgtatcacagttattgactctcatggatggcctaaagcagagagcacat
gtgattgtcatggcagcaaccaacagacccaacagcattgacccagccctacgacgattt
ggtcgctttgacagggaggtagatattggaattcctgatgctacaggacgcttggaaatt
cttcagatccataccaagaatatgaagctggcagatgatgtggaccttgaacaggtagcc
aatgaaactcatgggcatgttggtgctgacttagcagccctgtgctcagaggctgctctg
caagccatccgcaaaaagatggacctcattgacctagaagacgaaaccatcgatgctgag
gtcatgaactccctggcagttaccatggatgacttccgatgggccctaagccagagcaac
ccatcagcacttcgggaaactgtggtagaggtgccacaggtgacctgggaggacattggg
ggcttggaggatgtcaaacgtgagcttcaggacctggtccagtatcctgtggagcaccca
gacaaattcctcaagtttggcatgacaccctccaagggagtgctattctatggacctcct
ggctgtgggaaaaccttgctggccaaagccattgctaatgagtgccaggccaacttcatc
tccatcaaaggtcctgagctgctcaccatgtggtttggggaatcagaggccaatgttagg
gaaatctttgacaaggcccgccaagctgccccctgtgtactgttctttgatgagctggat
tcaattgccaaggcccgtggtggcaacattggagatggtggtggggctgccgaccgagtc
atcaaccagatcttgacagaaatggatggcatgtccacaaaaaaaaatgtgtttatcatt
ggcgctaccaaccgacctgacatcattgatcctgccatcttgcgacctggccgccttgat
cagctcatctacatcccacttcctgatgagaagtcccgtgtcgccattctcaaggccaac
ctgcgcaagtcccctgttgccaaggatgtggatttggagttcctggctaagatgactaat
ggcttctctggagctgacttgacagagatttgccaacgtgcttgcaagctggccatccga
gaatcaatcgagagtgagattaggcgagaacgggagaggcagaccaacccatcggccatg
gaggtagaggaagatgatccagtgcctgagatccgacgggatcactttgaggaagccatg
cgttttgcccgccgttctgttagtgataatgacatccggaagtatgagatgtttgctcag
acccttcagcagagtcgaggctttggcagcttcagattcccttcaggaaaccaaggtgga
gctggacccagtcagggcagtggcggtggcacaggtggcagtgtgtacacggaagataat
gatgatgacctgtatggctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (11)   
   RefSeq(nuc) (3)   
   GenBank (4)   
   EMBL (4)   
Protein domain (41)   
   Pfam (41)   
All databases (126)   

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