KEGG   Sus scrofa (pig): 397532
Entry
397532            CDS       T01009                                 
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain precursor
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04820  Cytoskeleton in muscle cells
ssc04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    397532 (COL5A2)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    397532 (COL5A2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ssc00536]
    397532 (COL5A2)
Glycosaminoglycan binding proteins [BR:ssc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   397532 (COL5A2)
SSDB
Motif
Pfam: Collagen COLFI VWC TILa Amnionless
Other DBs
NCBI-GeneID: 397532
NCBI-ProteinID: NP_001098759
UniProt: A0A8D0XNT6 Q59IP2
Position
15:complement(93611856..93981131)
AA seq 1499 aa
MMANWAEARPLLILTVLLGQFVSIKAQEEDEDEGYGEEIACTQNGQMYLNRDIWKPAPCQ
ICVCDNGAILCDKIQCQDVLECADPITPPGECCPVCPHTTGGGNTNIGRGRKGQKGEPGL
VPIVTGIRGRPGPAGPPGSQGPRGERGPKGKPGPRGPQGIDGEPGVPGQPGAPGPPGHPS
HPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPMGPPG
EPGEPGPMGPIGARGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKG
HRGHKGLEGPKGEVGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRLGPQGAPGQRGAHG
MPGKPGPMGPLGIPGSPGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSQGLPG
AVGTDGTPGAKGPTGSPGTSGPPGLAGPPGSPGPQGSTGPPGIRGQPGDPGVPGFKGEAG
PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKG
AQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPG
PPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPG
LAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERG
EPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG
GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENG
PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRG
TQGPPGATGFPGSAGRVGPPGPTGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG
PPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG
PTGAPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPG
SRGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLLGPQGPRGDKGDHGDRGDRG
QKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPVGPPG
VRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDD
KNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSA
EDAIKVYCNMETGETCISANPYSIPRKMWWASKSPDYKPVWYGLDMNRGSQFVYGDHQSP
NAAITQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGSNDLEIKAEGNVR
FRYTVLHDTCSKRNGNVGKTIFEYRTQNVARLPIIDLAPVDVGSTDQEFGVEIGPVCFV
NT seq 4500 nt   +upstreamnt  +downstreamnt
atgatggcaaactgggcagaagcaagacctctcctcattcttactgttttattagggcaa
tttgtctcaataaaagcccaggaagaagacgaggatgaaggatatggtgaagaaatagcc
tgcactcagaatggtcagatgtacttaaacagggacatttggaaacctgccccttgccag
atctgtgtctgtgacaatggtgccattctttgtgacaagatacagtgccaggatgtgctt
gaatgtgctgaccccataactccccctggggaatgctgtcctgtctgtccgcatacaact
ggaggtggcaataccaatattggtagaggaagaaagggacaaaaaggagaaccaggatta
gtgcctattgtaacaggcatacgtggacgtccaggacctgcaggacctccaggatctcaa
ggaccaaggggagagagaggcccaaaaggaaaacctggtccgcgtggtcctcagggaatt
gatggagaaccaggtgttcctggtcaaccaggtgccccaggacctcctggacatccgtct
cacccaggaccagatggcatgagcagaccattttcagctcagatggctgggttggatgaa
aaatctggacttgggagtcaagtaggactgatgcctggctctgtgggtcctgttggccca
aggggacctcaaggtttacaggggcagcaaggtggtgctggccctatgggacctcctggt
gaacctggtgaacctggaccaatgggtccaattggtgcacgtggaccagagggcccccct
ggaaaacctggtgaagatggtgagccgggtagaaatggaaatcctggtgaagtgggattt
gcaggatctccgggagctcgaggatttcctggggctcctggtcttccaggcctgaagggt
caccgaggacacaaaggtcttgagggccctaaaggtgaagttggagcaactggttccaag
ggtgaagctggccctactggtccaatgggtgctatgggtcctatgggtccaagagggatg
ccaggagagagagggagacttgggccacagggtgctcctggacaacgaggtgcacatggt
atgcctggaaaacctgggccaatgggtcctcttgggatacctggctcccctggttttcca
ggaaatcctggaatgaagggagaagcaggtcccactggggcacgaggccctgaaggtcct
caggggcaaagaggtgaaactgggccaccaggtcccgttggctctcaaggtcttcctggt
gcagtgggaactgatggtacacctggtgccaaaggcccaacgggttctccaggtacttct
ggtcctcctggcttagcaggcccccctggatctccaggaccacagggtagtactggacct
ccaggaattcgaggccaaccgggtgatccaggagttccaggtttcaaaggagaagctggc
ccaaaaggggaaccagggccacatggtattcagggaccaataggcccacctggtgaagaa
ggcaaaagaggtcctcgtggtgatccaggaacagtcggtcctccaggcccgatgggagaa
aggggtgctcctggcaatcgtggttttccaggctctgatggtttacctggaccaaagggg
gctcaaggagagagaggtcctgtaggttcttcaggacctaaaggaggtcagggggatcca
ggacgtccaggcgaacctgggcttccaggtgctcggggtctgacaggaaatcctggtgtt
caaggtcctgaaggaaaacttggacctttgggtgctccaggggaggatggccggccaggg
cctccaggctccataggaatcagagggcagcctgggagtatgggtcttccaggccccaaa
ggtagcagtggtgaccctggaaaacctggagaagcaggaaatgctggtgttcctgggcag
aggggagctcctggaaaagatggcgaagtcggtccttctggacctgtgggtccgccgggt
ctagctggggagagaggagaacagggccctccaggccccactggctttcaggggcttcct
ggtcctccagggcctcctggggaaggtggaaaaccaggtgatcagggtgttcctggagat
cctggagcagttggcccattaggacctagaggagaacgaggaaatccaggggaaagagga
gaaccaggaataactggacttcctggtgagaagggaatggctggaggacatggtcctgat
ggcccaaaaggcagtccaggaccaagtgggacccctggagatacaggcccaccaggtctt
caaggtatgccaggagaaagaggaattgcaggaactcctggccccaagggtgacagagga
ggcataggagagaaaggtgctgaaggcacagctggaaatgatggagcgagaggtcttcca
ggtcccttgggtcctccaggtcctgcaggtcccaccggagaaaagggtgaacctggccct
cgaggtttagttggcccacctggctcccgtggcaatcctggttctcgtggtgaaaatggc
ccaactggagctgttggttttgctggaccccagggtcctgatgggcagcctggagtaaaa
ggtgaacctggagagccaggacagaagggagatgctgggtctcctggaccacaaggtcta
gcaggatccccaggccctcatggtcctaatggtgttcctggactgaaaggtggtcgagga
actcagggtcctcctggtgctacaggatttcctggttctgctggcagagttggaccccca
ggtcctactggagctccaggacctgcagggcccttaggggaacctgggaaggagggacct
ccaggtcttcgtggagaccccggctctcacgggcgagtgggagatagaggaccagctggc
cctcctggtggcccaggagacaaaggggacccaggagaagatgggcaacctggtccagat
ggtcccccgggtccagctggaactactgggcaaagaggaatcgtcggcatgcccgggcag
cgtggagagcgagggatgcctggccttccaggcccagcaggcacaccaggaaaagtagga
ccgactggtgcaccaggagataaaggcccccctggacctgtgggacccccaggctcaaat
ggccctgtgggagaaccaggacctgagggtccagctggtaatgacggtactccgggacgg
gatggtgctgttggagaacgtggtgatcgcggagaccctgggcctgcaggtctgccgggc
tctcggggtgcccctggaacccccggccctgttggtgccccaggagatgcaggacaaaga
ggagacccgggttctcggggtcctataggaccacctggtcgagccgggaaacgtggctta
cttggaccccaaggacctcgcggtgacaaaggggatcatggtgaccgaggtgaccgaggt
cagaagggtcacagaggcttcactggtcttcaaggtcttcctggacctcccggtcccaat
ggtgaacaaggcagtgctggaatccctgggccatttggcccaagaggtcctccaggccct
gttggtccttcggggaaagagggaaaccctgggccgcttgggccagtcggacctcctggt
gtgcgaggcagtgttggagaagccggccccgagggtcctcctggtgagcctggtccacct
ggccctccgggtccccctggccaccttacagctgctcttggggatatcatggggcactat
gatgagagcatgccagatccacttccagagtttactgaagatcaggcggctcctgatgac
aaaaacaaaactgacccaggggtccatgctactctgaagtcactcagtagtcagattgaa
accatgcgcagccctgatggctctaaaaaacaccctgcccggacttgtgatgacttaaag
ctttgccattctgcaaagcagagcggtgagtactggattgatcctaaccagggatctgct
gaagatgcaatcaaagtttactgcaacatggaaacaggagaaacgtgtatttcggcaaac
ccatacagtataccacggaaaatgtggtgggccagcaaatctcctgattataagcctgtt
tggtatggtcttgacatgaatagaggatctcagtttgtttatggagaccaccagtcacct
aatgcagccattactcaaatgaccttcttgcgacttttatcaaaagaagcctcccagaac
attacttacatctgtaaaaacagtgtaggatacatggatgatcaggctaagaacctcaag
aaagctgtggttctgaaagggtcaaatgacttagaaatcaaagcagagggaaatgttaga
ttcagatacaccgttcttcacgatacttgctctaaacgaaatggaaacgtgggcaagacc
atctttgaatatagaacacagaatgtggcacgcttgcccatcatagatcttgcccctgtg
gatgttggcagtacagaccaagaatttggcgtcgaaattgggccagtttgttttgtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (13)   
   RefSeq(nuc) (3)   
   GenBank (5)   
   EMBL (5)   
Protein domain (5)   
   Pfam (5)   
All databases (48)   

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