KEGG   Sus scrofa (pig): 397553
Entry
397553            CDS       T01009                                 
Symbol
NR1H3
Name
(RefSeq) oxysterols receptor LXR-alpha
  KO
K08536  liver X receptor alpha
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03320  PPAR signaling pathway
ssc04148  Efferocytosis
ssc04931  Insulin resistance
ssc04932  Non-alcoholic fatty liver disease
ssc05160  Hepatitis C
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    397553 (NR1H3)
 09150 Organismal Systems
  09152 Endocrine system
   03320 PPAR signaling pathway
    397553 (NR1H3)
 09160 Human Diseases
  09172 Infectious disease: viral
   05160 Hepatitis C
    397553 (NR1H3)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    397553 (NR1H3)
   04931 Insulin resistance
    397553 (NR1H3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    397553 (NR1H3)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ssc03310]
    397553 (NR1H3)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    397553 (NR1H3)
Nuclear receptors [BR:ssc03310]
 1. Thyroid hormone like
  1H. Liver X receptor like receptor
   397553 (NR1H3)
SSDB
Motif
Pfam: Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 397553
NCBI-ProteinID: NP_001095284
Ensembl: ENSSSCG00000013241
UniProt: Q4TU03 A0A4X1VT52
Position
2:complement(15315283..15336785)
AA seq 447 aa
MSLWVEAPVPDVSPDSAVELWESDAQDASSQSLGSSSCILREESSTPQSAGGASRVGLDA
TESTALLPGVEASPESTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKG
FFRRSVIKGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLK
RQEEEQAQATSVPPRASSPPQVLPQLSPEQLGMIEKLVAAQQQCNRRSFSDQLRVTPWPM
APDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLL
ETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLI
AISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSV
HSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq 1344 nt   +upstreamnt  +downstreamnt
atgtccttgtgggtggaggcccctgtgcctgatgtttctcctgactctgcagtggagctg
tgggagtcagatgcacaagatgcaagcagccagtctctgggaagcagcagctgcatcctc
agggaggaatccagcacaccccagtctgcggggggcgcttcgagggtggggctggatgca
acagagtccacggccctgcttcccggggtggaggcctctccagagtccacagagctccgt
ccacaaaagcggaaaaaggggccagcccccaaaatgctggggaatgagctgtgcagtgtg
tgtggggacaaggcctccggcttccactacaacgtgctgagctgcgagggctgcaaggga
ttcttccgtcgcagtgtcatcaaaggggctcgctatgtctgccacagcgggggccactgc
cccatggacacctacatgcgtcgcaagtgccaggagtgccgtcttcgcaagtgccgccag
gcgggcatgcgagaggagtgtgtcctgtcagaagaacagatccgcctgaagaaactgaag
cggcaagaggaggaacaggctcaggccacatctgtgcccccaagggcttcctcgccgccc
caagtcctgccccagcttagcccagagcagctgggcatgatcgagaagctggtggctgcc
cagcagcagtgtaacagacgctccttttcagaccagcttcgagtcacgccttggcccatg
gcaccagatccccagagccgggaggcccgtcagcaacgctttgcccacttcactgagctg
gccatcgtctctgtgcaggagatcgttgattttgccaaacagctgccaggcttcttgcag
ctcagccgggaggaccagatcgccctcctaaagacctctgcgattgaggtgatgcttctg
gagacatctcggaggtacaaccctgggagtgagagtatcaccttcctcaaggatttcagt
tataatcgggaagactttgccaaagcagggctgcaggtggagttcatcaaccctatcttc
gagttctccagagccatgaatgagctgcaactaaatgatgctgagtttgccctgctcatt
gccatcagcatcttctctgcagaccggcccaacgtgcaggaccagctccaggtagagagg
ctgcaacatacatatgtggaggccctgcatgcctacgtctccatccaccacccccatgac
cgactgatgttcccacggatgctaatgaaactggtgagcctccggacactgagcagcgtc
cactcagagcaagtgtttgcactgcgcctgcaggataaaaagcttcccccgctgctctct
gagatctgggatgtgcacgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   RefSeq(pep) (11)   
DNA sequence (27)   
   RefSeq(nuc) (11)   
   GenBank (8)   
   EMBL (8)   
Protein domain (2)   
   Pfam (2)   
All databases (60)   

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