KEGG   Sus scrofa (pig): 397591
Entry
397591            CDS       T01009                                 
Symbol
NPC1
Name
(RefSeq) Niemann-Pick C1 protein precursor
  KO
K12385  Niemann-Pick C1 protein
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03265  Virion - Ebolavirus and Lyssavirus
ssc04142  Lysosome
ssc04979  Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03265 Virion - Ebolavirus and Lyssavirus
    397591 (NPC1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    397591 (NPC1)
 09150 Organismal Systems
  09154 Digestive system
   04979 Cholesterol metabolism
    397591 (NPC1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ssc02000]
    397591 (NPC1)
Transporters [BR:ssc02000]
 Solute carrier family (SLC)
  SLC65: NPC-type cholesterol transporter
   397591 (NPC1)
SSDB
Motif
Pfam: Patched NPC1_N Sterol-sensing MMPL ACR_tran
Other DBs
NCBI-GeneID: 397591
NCBI-ProteinID: NP_999487
Ensembl: ENSSSCG00000003707
UniProt: P56941
Position
6:complement(108403126..108450486)
AA seq 1277 aa
MSARGPAFGLLLLLLCPVQVFSQSCVWYGECGIASGDKRYNCRYSGPPKPLPEDGYDLVQ
ELCPGFFFGNVSLCCDVQQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQF
LNVTATEDYVDPVTNQTKTNVKELEYYVGETFANAMYNACRDVEAPSSNEKALGLLCGRE
AQACNATNWIEYMFNKDNGQAPFTITPIFSDLPTHGMEPMNNATKGCDESVDEVTGPCSC
QDCSIVCGPKPQPPPPPVPWRILGLDAMYVIMWSSYMAFLIVFFGAFFAVWCYRKRYFVS
EYTPIDGNIAFSVNSSDKGQAFCCDPLGAAFERGLRRLFAQWGAFCVRHPGCVVFFSLAF
IVACSSGLVFIRVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRMEQLIIRATNNQSHIY
HPYPAGADVPFGPPLSRDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSPYNKNCT
ILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPASLNDASLLHDPCLGTFGGP
VFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWESEFINFVKNYKNPNLT
ISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRLLVDSKISLGIAG
ILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQTYQRDERLQGETL
DQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAVLIDFLLQITCFV
SLLGLDIKRQEKNRLDVVCCVQGAEDGAGVQASESCLFRFFKNSYAPLLLKDWMRPIVIA
VFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVMDYFQSLSRYLHAGPPVYFVVEEGHNYT
SLKGQNMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYFDWIKPQSSCCRVY
NSTDQFCNASVVDPTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYS
SAVNILGNGSGVGATYFMTYHTVLQASADFIDAMQKARLIASNITRTMGLEASSYRVFPY
SVFYVFYEQYLTVIDDTIFNLGVSLGAIFLVTVVLMGCELWATVIMCVTIAMILVNMFGV
MWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSG
ITLTKFGGIVVLAFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGPSINKAKSL
ATQERYKGTEREQLLNF
NT seq 3834 nt   +upstreamnt  +downstreamnt
atgagcgcgcgcggcccggccttcggcctcctcctgctgctgctctgccctgtgcaggta
ttttcacagtcctgtgtttggtatggagagtgtggaatcgcatctggagataagaggtac
aattgcagatactctgggccaccaaaaccactgccagaggacggctatgacctagtgcag
gaactctgtccgggcttcttcttcggcaatgtcagtctttgctgtgatgttcagcagctg
cggaccctgaaggacaacctgcagctgcctctgcagttcctgtccagatgtccatcctgt
ttttataacctaatgaacctgttttgtgagctgacatgtagccctcgacaaagtcagttt
ctgaacgttacagcaactgaagattatgttgatcccgttacaaaccagacaaaaacaaat
gtaaaagaattagagtactatgttggagagactttcgccaatgccatgtacaatgcctgc
agggatgtggaggccccctcgagtaatgaaaaagccctggggctgctgtgtgggagggaa
gcccaagcctgcaacgccaccaactggatcgagtacatgttcaacaaggacaatggccag
gcaccattcaccatcacacccatcttttcagatcttcccacccacgggatggagcccatg
aacaatgccaccaagggctgtgatgagtccgtggatgaggtcacggggccgtgcagctgc
caggactgctccattgtctgtggccccaaaccccagcccccgccacctcctgttccctgg
agaatcctgggcctggacgccatgtatgtcatcatgtggagcagctacatggccttcctg
atcgtgttttttggagcattttttgctgtgtggtgctacagaaaacggtattttgtctct
gagtacacccccattgatggcaatatagctttctctgtaaactccagtgacaaagggcag
gctttctgctgcgaccctctgggcgccgcattcgagcgcggtctgcggcggctctttgcc
cagtggggcgcgttctgcgtccggcaccccggctgcgtcgtgttcttctccttggccttc
atcgtcgcgtgttcctcaggcctggtgtttatccgggtcacgactgacccggtcgacctc
tggtctgccccaggcagccaggcacgccgggaaaaggagtactttgacacgcacttcggg
cccttcttccgcatggagcagcttatcatccgggccacgaacaaccagtcacacatctac
cacccttatcccgcgggagccgacgtgcccttcgggcctccgctcagcagagacatttta
caccaagttcttgatttacaaacagcaatcgaaaacatcactgcatcctacaacaacgag
acggtgacgcttcaggacatctgcttggcccctctctcaccatataacaagaactgcacc
atcctgagtgtgttaaattacttccagaacagccattccgtgctggaccaccaagtaggg
gacttcttctttgtgtatgcggattaccacacacacttcctgtactgcgtacgggctccc
gcttccctgaatgacgccagtttgctccatgatccttgtctggggacgttcggtggacca
gtgttcccgtggctcgtgttaggaggctacgatgatcaaaactacaacaacgccactgcc
cttgtgataacctttcctgtcaataactactataacgatacagagaagctccagagggcc
caggcctgggaaagcgagtttataaattttgtgaaaaactacaagaatccaaatctgacc
atttcttttatggctgaacgaagtattgaagatgaactaaatcgtgaaagtaacagtgat
ctcttcactattctaatcagctatgccatcatgtttttatatatttccatagccctgggg
catatcaaaagctgtagcaggcttctggtggactctaaaatctccttgggcatcgccggc
atcctgatcgtgctgagctcagtggcctgctccctgggcatcttcagctacattggggtc
cccctcaccctcatcgtgattgaagtcatcccgttcctagtgctggctgtgggggtggac
aacatcttcattctggtccagacctaccagagagatgaacgtcttcaaggggaaaccctg
gaccagcagctgggccgggtccttggagaagtggctccgagcatgttcctgtcatccttc
tccgagacagtggcattcttcttaggaggcctgtccgtggtgccggctgtgcacactttc
tcgctctttgcggggatggcggtcctcatcgacttcctccttcagatcacctgcttcgtg
agtctcttggggttggacatcaagcggcaagagaaaaaccggctggacgtcgtttgctgt
gtccagggcgccgaggacggagcgggcgtccaggcctcagaaagctgcttgtttcgcttc
ttcaaaaattcctatgctccgcttctgcttaaggactggatgcgacccattgtgatcgca
gtatttgtgggtgttctgtcgttcagtatcgccgtcctgaacaaagtagaaattggactg
gatcagtctctttcgatgccagatgactcgtatgtgatggattatttccagtccctcagt
cggtacctgcacgccggcccgcccgtgtactttgtcgtggaggaggggcacaactacact
tctctgaaagggcagaacatggtgtgcgggggcctgggctgcaacaatgactccctggtg
cagcagatcttcaccgccgcgcagctggacaactataccaggataggctttgctccctcg
tcctggattgacgactattttgactggattaagccgcagtcgtcctgctgtcgagtctac
aatagcacagaccagttctgcaacgcctcagtggtcgatcccacctgcatccgctgccgg
cctctgacttcggagggcaagcagaggcctcagggcgaagacttcatgagattcctgccc
atgttcctgtccgataacccgaaccccaagtgtggcaaagggggacacgccgcttacagc
tcagccgttaacatcctgggcaatggctcaggggtcggagccacctacttcatgacctac
cacacagtgctgcaggcctctgctgacttcatcgatgccatgcagaaggcccgcctcatc
gctagcaacatcaccagaaccatgggcctggaagcaagtagctaccgtgtgttcccctac
agtgtgttctacgtcttctacgaacagtacctgaccgtgatcgacgacaccatctttaac
ctcggcgtgtccctgggagccatctttctggtgacggtggttctcatgggctgtgagctg
tgggccacagtgatcatgtgcgtcaccatcgccatgatcttggtcaacatgtttggcgtc
atgtggctgtggggcatcagtctcaacgcggtatctttggtcaacttggtgatgagctgc
ggcatctccgtggagttctgcagccacataaccagggcgttcacgctgagcacaaagggc
agccgtgtggaccgggccgaggaggcactcgcccacatgggcagctccgtgttcagtgga
atcacactaaccaaatttggaggcattgtggtgttggcctttgccaaatctcaaatattc
cagatattttacttcaggatgtatttagcaatagtcttgctgggagccactcatggatta
atattcctccctgtcttactcagttacataggaccatcgataaataaagccaaaagtctg
gccactcaagagcgctacaaaggtacagagcgagaacagctcctcaatttctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (56)   

Download RDF
DBGET integrated database retrieval system