KEGG   Sus scrofa (pig): 445465
Entry
445465            CDS       T01009                                 
Symbol
RXRG
Name
(RefSeq) retinoic acid receptor RXR-gamma
  KO
K08526  retinoid X receptor gamma
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03320  PPAR signaling pathway
ssc04659  Th17 cell differentiation
ssc04919  Thyroid hormone signaling pathway
ssc04920  Adipocytokine signaling pathway
ssc04928  Parathyroid hormone synthesis, secretion and action
ssc05200  Pathways in cancer
ssc05202  Transcriptional misregulation in cancer
ssc05207  Chemical carcinogenesis - receptor activation
ssc05216  Thyroid cancer
ssc05222  Small cell lung cancer
ssc05223  Non-small cell lung cancer
ssc05226  Gastric cancer
ssc05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    445465 (RXRG)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    445465 (RXRG)
   03320 PPAR signaling pathway
    445465 (RXRG)
   04919 Thyroid hormone signaling pathway
    445465 (RXRG)
   04928 Parathyroid hormone synthesis, secretion and action
    445465 (RXRG)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    445465 (RXRG)
   05202 Transcriptional misregulation in cancer
    445465 (RXRG)
   05207 Chemical carcinogenesis - receptor activation
    445465 (RXRG)
  09162 Cancer: specific types
   05226 Gastric cancer
    445465 (RXRG)
   05216 Thyroid cancer
    445465 (RXRG)
   05222 Small cell lung cancer
    445465 (RXRG)
   05223 Non-small cell lung cancer
    445465 (RXRG)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    445465 (RXRG)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    445465 (RXRG)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ssc03310]
    445465 (RXRG)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    445465 (RXRG)
Nuclear receptors [BR:ssc03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   445465 (RXRG)
SSDB
Motif
Pfam: Nuc_recep-AF1 Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 445465
NCBI-ProteinID: NP_001123685
Ensembl: ENSSSCG00000006328
Vega: OTTSUSG00000000640
UniProt: Q0GFF6
Position
4:85158313..85357116
AA seq 463 aa
MYGNYSHFMKFPTGFGGSPGHSGSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVG
TPLNALGSPYRVITSTMGPPSGTLAAPPGINLVAPPSSQLNVVNSVSISEDIKPLPGLPG
IGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD
CLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERIL
EAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVI
LLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKD
TQMDKSELGCLRAVVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLL
LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgtatggaaattattctcacttcatgaagtttcccacaggcttcggcggctcccctggc
cactctggctccacgtccatgagcccatcagcagccttgtccacagggaagccaatggac
agccaccccagttacaccgacacaccagtgagtgccccacggaccctgagtgcggtgggg
acccccctcaatgccctgggctctccataccgggtcatcacttctactatgggcccacct
tcaggaacgctggcagcccctccaggaatcaatctggttgccccacccagctctcagcta
aatgtggtcaacagtgtcagcatttcagaggacatcaaacccttacccgggcttcctggc
attggaaacatgaactacccgtccaccagccctggatctctggttaaacacatctgtgcc
atctgtggggacagatcctcaggaaagcactacggtgtgtacagttgtgaaggctgcaaa
gggttcttcaagagaaccataaggaaggacctcatctacacctgtcgggataataaagac
tgcctcattgacaagcgccagcgcaaccgctgccagtactgtcgctatcagaagtgcctt
gtcatgggcatgaagagggaagctgtgcaagaagaaaggcagagaagccgggagagggct
gagagtgaggccgaatgtgccagtagtggccatgaagatatgcctgtggagaggattctg
gaagctgaacttgctgttgaaccaaagacggaatcctatggtgacatgaacatggagaat
tcgacgaatgaccctgtcaccaacatatgccacgctgctgataagcagctctttactctc
gttgaatgggccaagcgtattccccacttctctgacctcaccttggaggaccaggtcatt
ctgctccgggcagggtggaatgaattgctgatcgcctccttttcccaccgatcggtttct
gtgcaggacggcatcctcctggccacgggtttacacgtccaccggagcagtgcccacagt
gctggggttggctccatctttgacagagtcctgactgagctggtctccaaaatgaaagac
acgcagatggataagtcggagctggggtgcctgcgagccgtcgtgctatttaacccagat
gccaagggtctgtccaacccctcagaggtagagactctgcgagagaaggtttatgccacc
ctcgaggcctacaccaagcagaagtatccagaacagccgggcaggtttgccaagctgctg
ctgcgcctcccagccctgcgctccatcggcttgaagtgcctggagcaccttttcttcttc
aagctcatcggggacacgcccattgacaccttcctcatggagatgttggagaccccgctg
cagatcacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (13)   
   KEGG PATHWAY (13)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (14)   
   RefSeq(nuc) (4)   
   GenBank (5)   
   EMBL (5)   
Protein domain (3)   
   Pfam (3)   
All databases (48)   

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