KEGG   Sus scrofa (pig): 494565
Entry
494565            CDS       T01009                                 
Symbol
LAMP1
Name
(RefSeq) lysosome-associated membrane glycoprotein 1 precursor
  KO
K06528  lysosomal-associated membrane protein 1/2
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04140  Autophagy - animal
ssc04142  Lysosome
ssc04145  Phagosome
ssc05152  Tuberculosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    494565 (LAMP1)
   04142 Lysosome
    494565 (LAMP1)
   04140 Autophagy - animal
    494565 (LAMP1)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    494565 (LAMP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssc04131]
    494565 (LAMP1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssc04147]
    494565 (LAMP1)
   04090 CD molecules [BR:ssc04090]
    494565 (LAMP1)
Membrane trafficking [BR:ssc04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Cargo receptors
    494565 (LAMP1)
  Other autophagy associated proteins
   RNautophagy/DNautophagy
    494565 (LAMP1)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of hepatic cells
   494565 (LAMP1)
CD molecules [BR:ssc04090]
 Proteins
  494565 (LAMP1)
SSDB
Motif
Pfam: Lamp Lamp2_2nd LmeA YiiD_C DDE_Tnp_IS1595
Other DBs
NCBI-GeneID: 494565
NCBI-ProteinID: NP_001011507
Ensembl: ENSSSCG00000009555
Vega: OTTSUSG00000001928
UniProt: A0A8D1DTS3 Q5K4G2
Position
11:78600818..78617587
AA seq 413 aa
MAAPGGAWRRPLLLLLLLLGLARGASAVFVVSDGNGTACIMADFAAAFEISYDSRSGAKN
TTFSLPASAQVLNSSSCGKENTSDSSLVIAFGRGHTLTLSFTRNATRYSVQLMTLVYNLS
DAEFFPSASSKGTKTVAASTDIRADLNTKYRCVSNSQVHLLNVTVTLGNATIQAYLANNS
FSQQETRCEQDKPSPPTPTAPPTPTPTPAPTSPVVSRYNVSGANGTCLLASMGLQLNVTY
RTKDNTTVTRGLNINPNKTTFGGSCSAQLVTLELQGESLRLLALQFALNTSSSRVFLQGV
QLNMTLPDARDPSFSAANSSLRALQATAGNSYKCRSEQRLQVTEAFALNVFQVRVQAFRV
DGDKFGPAEECQLDENSMLIPIAVGGALAGLVLVVLMAYLVGRKRSHAGYQTI
NT seq 1242 nt   +upstreamnt  +downstreamnt
atggcggcccccggcggcgcctggcgacggccgctcctgctgttgctgctgctgctcggc
ctcgcgcgtggcgcctcggcggtgttcgtggtgagcgacggcaacgggaccgcctgcatc
atggccgacttcgccgccgccttcgagatcagctacgacagccggagcggcgccaagaac
acgaccttcagcctgccagccagcgcccaggtgttaaacagcagctcttgcggtaaagag
aacacctccgactccagtctcgtgattgcttttggaagaggacacacactcaccctcagt
ttcacaagaaatgccacccgttacagcgtccagctgatgacgctggtttataatctgtca
gacgcagagttcttccccagcgcgagctctaagggcaccaagacggtggcagccagcacc
gacatcagggcggacctcaacaccaagtacaggtgcgtgagcaacagccaggtgcacctg
ctcaacgtgaccgtcaccctcggcaacgccaccatccaggcgtacctggcgaacaacagc
ttcagccagcaagagacgcgatgcgagcaagacaagccctcaccgcccaccccgacggca
ccgcccacacccacccccaccccagcacccacgagccccgtggtgtccagatacaacgtg
agcggcgccaacgggacctgcctgctggccagcatggggctgcagctgaacgtgacctac
aggacgaaggacaacacgaccgtgaccagggggctcaacatcaaccccaacaagaccacg
ttcggcgggagctgctccgcccagctggtgaccctggagctgcagggcgagagcctgcgg
ctgctggccctccagtttgccctgaacacgagttccagccgggtcttcctccagggagtc
cagctgaacatgactctgccggacgccagagaccccagctttagcgctgccaacagctcg
ctgagggcgctgcaggccaccgccggcaactcctacaagtgcaggtcggagcagcgcttg
caggtcacggaggcctttgccctgaacgtgttccaagtgcgggtccaggcgttccgcgtg
gacggggacaagttcgggcccgcggaggagtgtcagctggacgagaacagcatgctcatc
cccatcgccgtgggcggcgccctggcgggcctggtcctcgtcgtcctcatggcctacctc
gtcggcaggaagaggagccacgccggctaccagaccatctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (5)   
   Pfam (5)   
All databases (40)   

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