KEGG   Synechocystis sp. PCC 6803: sll1818
Entry
sll1818           CDS       T00004                                 
Symbol
rpoA
Name
(GenBank) RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
syn  Synechocystis sp. PCC 6803
Pathway
syn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:syn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    sll1818 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syn03021]
    sll1818 (rpoA)
   03400 DNA repair and recombination proteins [BR:syn03400]
    sll1818 (rpoA)
Enzymes [BR:syn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     sll1818 (rpoA)
Transcription machinery [BR:syn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     sll1818 (rpoA)
DNA repair and recombination proteins [BR:syn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      sll1818 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5
Other DBs
NCBI-ProteinID: BAA17325
CyanoBase: sll1818
UniProt: P73297
Structure
Position
complement(829141..830085)
AA seq 314 aa
MAQFQIECVESSTRKNQQQYSKFSLEPLDRGQGTTVGNALRRVLLSNLPGAAVTAIRIAG
VNHEFATILGVREDVLEIMLNMKELVLKSYTDQPQIGRLTAIGPGTVTAAQFEVPSEVEV
IDPNQYIATLAEGAKLEMEFRVERGVGYRVIERGKDENSSLDFLQIDSVFMPVTKVNYTV
EDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLKDLNELEAAHSDYQDE
VNPESQIPIEELQLSVRAYNCLKRAQINSVADLLEYSQEDLLEIKNFGLKSAEEVIEALQ
KRLGITLPHEKAKA
NT seq 945 nt   +upstreamnt  +downstreamnt
gtggcgcagtttcaaattgagtgtgtggaatccagcaccagaaaaaatcaacagcagtac
agtaagttttcccttgaacccttggaccggggccagggaacgacggtgggaaatgctttg
cggcgggtattgttgtccaacttacccggggccgcggtgacggccatccgtattgcgggg
gttaaccatgagttcgccactattctaggcgtccgggaggatgtcctggagattatgctg
aacatgaaggaacttgtgctcaaaagctacaccgatcagccccaaattggccgtctgacg
gcgatcggcccgggaacggtaacggcagcgcagtttgaggtaccttcggaggtggaggtt
attgatcctaaccaatacatcgccaccctagcagaaggggccaaactggaaatggaattc
cgagtggagcgcggcgtaggttatcgagttatcgagcggggcaaggatgagaattcatct
ctagattttctccaaattgactcggtatttatgccggtgactaaggtcaactacacagtg
gaagacattcgggccgatggcatgagtccaaaggaccggttgattctagacatttggact
aatggcagtattcagcctcgggaggcgttgtcggaagcatctgacattattgccaatctt
tttatcccccttaaggatctcaatgagctggaggcggcccatagcgattaccaggacgag
gtcaatccggaaagtcaaattcccatcgaagagttacagctttctgtccgtgcctataac
tgtctgaagcgagcccagattaattccgtggcagatctactggagtatagccaggaagat
ctactggaaatcaagaattttggtctcaaatccgcagaggaggtgattgaggcactgcaa
aaacgtttgggtattaccctgccccacgaaaaggctaaagcttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (4)   
   Pfam (4)   
All databases (47)   

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