KEGG   Taeniopygia guttata (zebra finch): 100218744
Entry
100218744         CDS       T01082                                 
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
  KO
K10484  structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    100218744 (SLX4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tgu04121]
    100218744 (SLX4)
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100218744 (SLX4)
Ubiquitin system [BR:tgu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul3 complex
    Adoptor and target recognizing subunit (BTB)
     100218744 (SLX4)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Other HR factors
     100218744 (SLX4)
SSDB
Motif
Pfam: Slx4 BTB zf-C2H2_jaz Baculo_IE-1 Zn-C2H2_12 zf-met
Other DBs
NCBI-GeneID: 100218744
NCBI-ProteinID: XP_030140569
Position
14:complement(13942185..13970096)
AA seq 1859 aa
MDEQDNDFKELWANILSRAKKKAGDAETTKRVQNRPKSTTTQSRLRRGKAAAKSQTHHHL
PAVKETNFLQNLGPEEQALVHEEDGDAAACSGETAQEDGARSPLPASQLSTGTTECSQRP
LTVNPASGCSQTTLPFLPATPPGTCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGS
MPKAAASRDFPAGSQEQNPPEDDTHHPTSVEHDGALALALQQESKEDALASLEDAGLFFC
QICQKDLTAMNTLRREQHVNRCLDEMEEAQMSSSSKPVVPECPICGKQFQTPQSRVSHLK
RCAVEMEVPPNLLLQAVQLQVATLGDAALQCPTSNQPSRAKRKGPSSEDLRKTQKRAKME
PKDEDLQVAMAMSRSLLEQEKQEQAKSITNVKAVAAFPIKWKPGSEKKRRRKGTSAPPPL
LLQDPEKVHKRIQERVAMMLTEEVEFPPTPQLPISRILEDESGKAAWLMPLSKVKKCFLW
NISALTGPCDPESFYTAALTPPIVPWKPVQNKPENIQPSVGSHQPKVSQQTQPDLSSQEP
TCTKVGGQTSVEAKPGPEGDGQLLSPSQKDIQTLQDLVELAREGLTLTQWNLDSGHVQAA
GQPGEELTSSDLPLSGFVPPSKKKKLVRSSTKRTSLGLLAQDFGAMVNNPHLSDVQFQVD
SGDVLYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAPTRRVLLSDVSAQAVAAFLRYLYA
ADTNFPAGLRPQLQALAARFGVRELMAERESSAGESQVSSGVDSEDDLISVRDDEDCEDR
AENFQDLLKSVWVGEDEEEVAMLSPECQKEDDSEVGEQELEEIYEFAATQRKMAQGEREV
SRGTHCSICSDTEAVQGTNQQTEQEKAKRPESASVSCSLEDLRDGNSVERSECDLSAQKE
KMQNINRCKTMNDLQTTIVPCHSEPQKWDGTSHGANEVGAAGRCEDVKDSRSPQVSHDKA
NHCEEQFPGLQGDTGLNDSYELLFSASQGYHCEPSVKEVTKESGKSLSEKHVGLNDSLLF
SKSQKDCSPCKDGFCRSPTPQPYVSLFPALGSSPASPKSEGKFAREHVSTPKQNKKEKSS
PSDKIHSQKAKELGAASKNEITVSPAELPHSESNKHTHVPVLSSPGRTQDAAAQGIKEGD
VIVLSSSDDEMELQQGKKLPESDSALKKMEVPAHLKCTDMEKGPEIPKPDHNSSVPETEQ
RSVQVSCGNTDTVCVSRDVKVCPEFPLSRQTGACTEIKQSPNLSPGKRLSNEMSPGTDSS
WLVPGTPVLKKSRSFSTQTEVTSVNSLKGAGSKLSTKNLAAGNSNHEMAGNLIKVLEILS
DKHSPMKNLASGMSPPSSPAAESFSKNPLPVSPVDPVLLSPGHTNMESKCASISGLPTRV
PPCQEQPLEDKINISVVELEDSDREVSLPSLGSSVLLCEEPPIPVDDCWHVGYLSPARGD
CHDSSQVGCAKTSMASSPSPGSWQEQGESPVQMQGIKGSTPVQGSPAGRRTTLHCPEKSP
IEPCSSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAAKAGPTDPVKTPEPSC
QENNRSPSTPVTPMPAYSIMETPQLKKELSRFGVRALPKRQMVLKLKEIFQYTHQDGDSD
FEDAISYSQPLPQKSPDRRQPKAGRAAGGNRAGALRAVGKRKQLAKASAVLPRGEADGAS
HGTGCAAPKDRFKVTHHPEGAKEQERPSVSLAADGEELPASQESACSSVDGSDISFGSQS
SFVNGFETCAFTSEEEEEEFPASQAAAREEEKLEAIRCYIRSNTALYNRILFYEPIELAD
LHAELKQNGIKISKTKLLDFLDSQCITSTMARARKEQEQKRKENRKQRRRYRVKPTPSR
NT seq 5580 nt   +upstreamnt  +downstreamnt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgagtagggcaaag
aaaaaggctggggatgctgagacaacaaagagggttcagaacaggccaaagagcaccaca
acacaaagcagattaagaagaggcaaagctgctgctaagagccaaacccatcatcactta
ccagcagtgaaggagacaaactttcttcaaaatttgggtccagaggagcaagcattggtg
catgaagaagatggtgatgctgcagcctgtagtggtgagactgcacaggaggatggagca
agaagccctctccctgccagccagctgagcacagggactactgagtgtagccagaggcct
ctgacagtaaatccagcaagtggctgctcccagactactctgcccttccttcccgctact
cctccaggaacctgctcctcacccacccccaaggtgcgggtggcagagctggtggtggag
agaatgcagcagttcaagagggtggcacctgagcagctgaaacacagctcggatgggagc
atgccaaaggctgcagccagcagggatttccctgccgggagccaggagcagaaccctcct
gaggatgatacccaccatcccacatccgtggaacacgacggtgctctggctttggctctt
cagcaggaatccaaggaggacgccctggcaagcctggaggatgcaggcttgttcttctgt
cagatctgccagaaggatctcacagccatgaacaccctgcggcgagagcagcacgtcaac
aggtgtctggatgagatggaagaagcacagatgtcatcctccagcaaaccagtggtccct
gagtgtcccatctgtgggaagcagttccaaaccccccagagccgagtcagtcacctgaaa
cgctgtgctgtggagatggaggtgcctcctaatctgctgcttcaggcagtgcagttgcag
gtggccacgcttggtgacgcagctctacagtgtcctaccagcaatcagcccagcagggcc
aagcggaaaggcccctctagtgaggacttgaggaaaacacagaagagggccaaaatggag
cctaaggatgaagatttgcaggttgccatggcaatgtcacgctctctgttggagcaagaa
aagcaggaacaagcaaaatcaattacaaatgtgaaagcagtggctgctttcccaatcaaa
tggaaaccaggatcagagaaaaaaaggcgtagaaaaggcaccagtgcccctccacctctg
ctgctccaggacccagagaaggtccacaagaggatccaggaaagagtagctatgatgctg
acagaagaggtggaattccctcccacccctcagttgcccattagtaggattctggaggat
gaatctggaaaagcagcctggctcatgccattgtccaaagtcaagaaatgctttttatgg
aacatcagtgctctgacaggaccctgtgaccctgaatcgttctacactgcagccttaacc
cctccaattgtaccttggaagcctgtgcagaataagccagaaaacattcagccatcggtg
ggatctcatcagccaaaagtatcccagcaaactcagcctgacctcagttctcaggagccc
acttgcacaaaggttggaggccaaacttctgttgaagccaagccaggccctgaaggagat
gggcagcttttatccccgagccagaaggacattcagaccctgcaggacctggtggagttg
gccagggaaggactcacccttactcagtggaaccttgactctggccatgttcaggcagca
gggcagccaggagaagaactgacttccagtgatcttccacttagtggctttgtgccccca
tccaagaagaagaaactcgtcaggagcagcactaaaagaacctctctcgggctgctggct
caagattttggtgccatggtcaacaacccccacctgagtgatgtccagttccaggtggac
agcggggacgtcctctacgcccacctgttcgtgctgtacgcgcggtgtccggcggcggct
caggctgtgcacagcgaggggttggtggtggaggaggacggggccgcgccgacacgccgg
gtgctgctgagcgatgtgtcggcccaggctgtggctgccttcctgcggtacctctatgct
gctgacaccaacttccctgctgggctgcggccccagctgcaggctctggctgccaggttt
ggtgtgagggaactgatggcagagcgtgaaagcagcgctggagagagccaggtgtcctct
ggagtggattcagaagatgatcttatctctgtgagggatgatgaagattgtgaggacaga
gctgagaacttccaagacctcttgaagtcagtgtgggtgggtgaagatgaggaagaagta
gctatgctgagccctgagtgccagaaggaggatgacagtgaggtgggagaacaagaactg
gaggaaatctatgagtttgctgcaactcagagaaagatggctcagggtgaaagagaggtg
agcaggggaacacactgcagcatctgcagtgacaccgaggcagtccaaggtacaaaccag
caaactgagcaggaaaaggcaaagagacctgaatctgcttcagtaagctgcagcctcgaa
gatctgagggatggcaacagtgtggaaagatctgaatgtgacttgtctgcacaaaaagag
aagatgcagaatataaataggtgcaagaccatgaatgatctacagaccactattgtgcct
tgccacagtgaacctcagaaatgggatggaacatcccatggtgctaatgaagtaggggct
gctgggagatgtgaggatgtgaaggattccaggtcacctcaggtctcacatgacaaggca
aatcactgtgaagagcagtttcctggtttacagggtgatactggtctaaatgacagctat
gaacttttgttttctgcctctcaggggtatcactgtgagccttcagtgaaagaagttacc
aaagaatcaggaaagtcccttagtgaaaaacatgttggtcttaatgattcacttctgttc
agcaagtcacaaaaagactgctctccatgtaaggatggattttgtaggagtccaactccc
cagccttatgtgtccctttttcctgctcttggctcttcacctgcatctccaaaatcagag
ggaaagtttgccagagaacatgtgtcaacaccaaagcaaaacaaaaaggaaaaatcatcc
ccatctgataaaatacactcccagaaagccaaggagctgggtgctgcatcaaaaaatgag
atcacagtttctccagcagagcttcctcacagtgaatcaaacaagcacacacatgtccca
gtgttgtcatcaccaggcaggactcaggatgctgcagctcaggggatcaaggagggtgat
gttattgttttatcttcttctgatgatgaaatggagttacaacaaggcaagaagttgcca
gagtctgactctgctctgaagaaaatggaagtccctgcgcacctgaagtgtacagacatg
gaaaaaggtcctgagataccaaaacctgaccacaattcatcagtccccgaaacagagcag
agatcagtccaggtctcatgtggcaatacagatacggtgtgtgtaagtcgtgatgtaaag
gtgtgtcctgaatttcctctcagcagacaaacaggtgcttgtacagagatcaaacagagt
ccaaacctgagccctgggaaaaggctcagtaatgaaatgtctccaggcacagacagctcc
tggcttgtgccaggaacaccagttctgaagaaaagcagaagcttctcaacacagactgag
gtcacaagtgttaattctttaaagggtgcaggatctaaactcagcacaaagaatttagca
gcaggtaatagtaaccatgaaatggctggaaatttaataaaagttctcgaaatattgtca
gacaaacattcacctatgaaaaacttggccagtggaatgagcccacccagcagcccggca
gcagaatccttttccaagaacccccttccagtttctccagtagatccagttctcctctcc
cctggccacaccaacatggaaagcaaatgtgccagtatctcaggtttacccacacgggtg
cctccgtgccaggagcagccactggaggataaaatcaacatcagtgtggttgagctggag
gacagtgacagggaagtaagcctgccttctctgggtagcagtgtcctgctgtgtgaggag
cccccaatccctgttgatgactgctggcacgttgggtatctgtcaccagccagaggtgac
tgccatgactccagccaggttggctgtgcaaagaccagcatggccagcagccccagccct
ggctcttggcaggagcagggggagagcccagtccagatgcagggaattaagggcagcacc
cctgtccaaggaagtcctgctggcaggagaacaactttgcactgccctgagaagagccct
attgagccatgttcatcagtgggcagcagagccagttacttggactccaaaatctgggat
gactggaatggagaagagaaggaagatgaacttccagagattcttcctctgtctcagagg
ttggcagctgcagcaaaggccggtccaacagatcctgtcaagactcctgaaccttcctgt
caggagaacaacaggtcccccagcactccagtgacacccatgccagcttattccatcatg
gagaccccgcagctgaagaaggagctgagcagattcggtgtccgtgctctcccaaaacgc
cagatggtgttgaagctgaaggagatattccagtacactcaccaggatggggactctgac
tttgaggatgcaatctcctattcccagcccctcccacagaagtccccggacagaaggcag
ccgaaggcaggccgggctgcgggcgggaatcgcgccggcgccctcagggctgtgggcaag
aggaagcagcttgccaaggcttctgcagtgctccctaggggtgaggctgatggtgcatcc
catggaacaggctgtgccgcacccaaggacagatttaaagtgacacatcacccagaagga
gccaaagagcaggaaaggccatctgtgtccctggcagctgatggcgaggagctcccggca
tcccaggaatcagcatgttcctcagtggatggaagtgacatctcctttggttcacagagt
tcctttgtgaatggatttgaaacatgtgcttttacatctgaggaggaggaagaggaattt
ccagcatctcaagcagcagctcgggaagaggaaaagctggaggcaatcagatgctacatc
cgctcaaacacggccctgtacaacaggattctcttctatgagcccatcgaactggctgat
ctgcatgcagagctcaaacagaatggtattaaaatttccaagacaaagctgctggacttt
ctggattctcagtgcatcacatctaccatggccagagcccggaaagagcaggagcagaaa
aggaaggagaacagaaaacagagaaggcgataccgagtgaagcccaccccttcccgctga

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