KEGG   Thermotoga maritima MSB8: TM0458
Entry
TM0458            CDS       T00022                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
tma  Thermotoga maritima MSB8
Pathway
tma03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TM0458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tma03021]
    TM0458
   03400 DNA repair and recombination proteins [BR:tma03400]
    TM0458
Enzymes [BR:tma01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TM0458
Transcription machinery [BR:tma03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TM0458
DNA repair and recombination proteins [BR:tma03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TM0458
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: AAD35543
UniProt: P29398
Position
478393..482184
AA seq 1263 aa
MKEISCGRRTRVSFGKSREPLPIPDLVEIQKSSYRRFLEEGLLEVLKKFSPIYSQATRSD
LRKSDRGFALEFVSTRTGEPAIDPLECKAKGLTYSVPIYATARLTDMKSGEMKEEEVFLG
YIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYIDREEYGGYFLPSRGAWLEVILDP
YDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSLLLHVGSILLEDIY
DGGRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLEVVSSSSEEGEEEEE
KTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERYDLSEVGRYKVNE
RLRNAYIRYLIEVEGEDPEEARKKVYNETSLVLKPLDIVLASRILFDYFERRYVNDFEID
SYELKNLIRIFKEEYLEKRKTAPYDLRKLVSVFRRNYGVTSDLGVFAAIRYVSNINKELP
SIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSLSKVSIQSLINIKS
IISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKVFEARNVHYSQYGR
LCPIETPEGANIGFITSLAIYAKIDEYGFLMTPYRKVVNGKVTDEVVYLRANEEEEYKII
PATTPVDEEGNIIPERVVARMGEDIRLVPKEEVDFMDVSTKQPFSVSASLIPFLEHDDAS
RALMGSNMQRQAVPLLKTEAPLVGTGMEWEAAKNSGYVILAEHDGIVKEVDAARVVVHRT
DENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDPIADGPATDMG
ELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQARETRLGPEEITA
DIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSVF
GERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLKLVRVYVASRKTLDIGDKL
AGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGK
WFATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGY
MYMLKLIHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAE
MLTIKSDDIKGRNEAYKAILKNMNIPEPGVPESFRVLIKELRGLALDVRLYDENGNEIDI
DKY
NT seq 3792 nt   +upstreamnt  +downstreamnt
atgaaagagatctcttgcggtaggaggacgagggtttctttcggcaagagccgagagccc
ctgccaattccagacctcgtggagatccagaagagttcctaccgaagattcctcgaagaa
ggtttgcttgaagtcctcaagaaattttctcccatttattcgcaggcgacccgctcagat
ttgagaaaatcagacagaggatttgctctcgagtttgtttcaaccagaactggagaacct
gccatcgatccccttgaatgtaaagcgaagggtctaacctacagtgttccgatatatgcg
acggctcgccttaccgacatgaaaagcggtgagatgaaggaagaagaagtgttccttggc
tacattccctacatgacggatcgtggaacgttcataataaacggagcagaaagggttgta
gtcaatcagatagtggtttccccagggctttacttctcgtctgagtacatagacagagaa
gaatacggcgggtactttctcccttctcgaggtgcatggctcgaagtcatcctcgatccc
tacgatggagttctttacgcgggccttgacggaaagaaggtcaaccttttcctctttctg
aaaacgatcggttacgaaaaagatgaggatatcctctccctttatcccacctatctggat
gccgacgatgaagacagtctcctgctccacgtgggctccattctgctcgaagacatctac
gatggtggcaggaagatcgctgaaaaatgggatatcctgaccaaagatctcgcggaaagg
attctgatgatagatgacataaatcagataaaaatagttcatccaatagctcaaaataca
tttgaaaagatgctggaagtggtgtcttcctcgagcgaagagggagaggaagaagaggaa
aagacaaagatttacggtttaaacgaagtcaccgttgtggacgcatatctggaaattttc
aggagattgcgacccgaagaacttccaagaataaacgcggcaaaaaggtatctgcacgac
ctcttcttcaatccggaaaggtacgatctttccgaggtgggaagatacaaagtcaacgaa
agactcagaaacgcttacatcaggtacctcatagaggttgaaggggaagatcccgaagag
gcgaggaagaaggtttacaacgaaacttctctcgttctgaaaccacttgatatagtcctc
gcttccagaattctcttcgactactttgagagaagatatgtcaacgattttgaaatagat
tcctacgagttgaagaatctgatcagaatcttcaaggaagaatacttggaaaagagaaaa
acggctccctacgatctcagaaaacttgtatctgtgttccggagaaattacggagtaaca
tctgatctcggtgtgtttgctgctatcaggtatgtttccaacataaacaaagagcttcct
tcgatacctttcgatacgaaggatcacctcgggaacaaacgtgttagaaccgttggagaa
ctcgttcagagagagttcgagagattgttcgcaagggcgcagaaggccattcaggaaaga
ctcacactcataaactctttgagtaaggtttccattcagagccttataaacataaaatcc
atcatatcaacggtcaaccagttcttcgcgatgaaccagctttctcagttcatggatcag
gtgaatcctctgtcggaactcactcacaaaagaagggtttctgctgtcggacccggtgga
ttgagaagagaatccaaagtcttcgaagcaagaaacgtgcactactctcagtacggaagg
ctgtgtcccattgaaacacccgaaggcgcgaacataggattcataacatctctggctata
tacgctaaaatcgatgaatacggatttctcatgactccttatagaaaggtagtcaatgga
aaagtaacggatgaagtggtctatctgagggccaacgaagaagaagagtacaaaatcata
cctgccaccacacccgtggatgaagagggcaacataataccagagagagtagtggctcga
atgggtgaagatatcaggcttgttcccaaagaagaagtagatttcatggatgtatcgacg
aagcaacccttcagtgtctcggcttcactcattccgttcctcgaacacgacgacgccagc
cgagccctcatgggttcgaacatgcagaggcaggccgtcccacttctgaaaacagaagca
cccctcgttggaactggaatggaatgggaagcagcgaaaaattctggttatgttattctc
gcagaacacgatggaatagtgaaagaggtcgacgctgccagagttgttgttcacagaacg
gacgagaatggaaatctcatgtacgacgataaaggcaatccagtggttgatgaatacaga
cttctaaagtttgtgagatccaaccaggatacgatgataaatcaaaaacccatcgtgaac
gaaggcgattttgtgaagaagggtgatcccatagccgacggtccggcaaccgacatggga
gaactggcacttggaaggaacatcctcgttgccttcatgccatgggaaggttacaactac
gaggacgccatccttgtgagtcaggagcttctcgaagaagacgtcttcacatcgatccac
atagaagtttatgaaactcaagcaagagaaacgaggctcggtcctgaagagatcaccgct
gatataccgaacgtgagcaaagaacttctgaaaaatctcgatgagaacggaatcatcaga
gttggagcgtacgttgtgagtgactatggagtgggttctcaggcgatactggttggaaaa
gtgacgccgaaaggcgaaggagacacaacacccgaagaaaagatcatcagatccgttttt
ggtgaacgcggaagagacgtgaaggatacatctctcaggctgcctcacggggttgaggga
agagttataagggtcgatgtttacgatcaaaacgatatagcagaactgggagcgggagtt
ttgaaactcgtcagggtgtacgttgcctcaagaaagacgctcgacatcggagacaaactc
gcaggacgccacggaaacaaaggagtcgtttcaaacatacttccaaaagaagacatgccg
ttcctacccgatggaacaccggttcagatggtactgaacccgctgggaataccttcacgt
atgaacgtcggtcagattctggaaacgcaccttggatggctcgccaaactaactggaaaa
tggttcgcaactcctgtgttcgaaggggcgaaagaagacgaaattctcagaccgctctac
gaagaaaggaagaagagaggccttcaccttggagacgacgaaaacaatccgaatggaaaa
gtggttctcagagatggaagaacgggagaacccttcgacaatcctgtggtggttggttac
atgtacatgctgaaactcatccatatagccaaagaaaagattcacgcaaggtccacagga
ccgtactctctcattcaccagcagcctctcggtggaaagtctcacttcggtggacagagg
cttggagaaatggaggtctgggctctggaggcctatggagctgctcatactcttgcggag
atgctcaccataaaatccgacgacataaaaggaagaaacgaagcctataaagccatactg
aagaacatgaatatacctgaacctggtgttcccgaaagctttagggttctcatcaaagaa
ctcagaggtctcgcgctcgatgtgagactctacgatgagaacggtaacgagatagatatc
gacaagtactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (40)   

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