KEGG   Xenopus laevis (African clawed frog): 734294
Entry
734294            CDS       T01010                                 
Symbol
msh6.L, msh6
Name
(RefSeq) mutS homolog 6 L homeolog
  KO
K08737  DNA mismatch repair protein MSH6
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    734294 (msh6.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xla03400]
    734294 (msh6.L)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     734294 (msh6.L)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II
Other DBs
NCBI-GeneID: 734294
NCBI-ProteinID: NP_001089247
Xenbase: XB-GENE-986641
UniProt: Q5FWN5
Position
5L:complement(5745089..5763605)
AA seq 1340 aa
MSKQKTLFSFFTKSPPVSSSTKSGKVSSSPTEADVPSSGGKKSSSSPKEGAKEKAAGAAA
RTPGGKAPKSAAPSTACDFNPGDLVWAKMLGHPWWPSLVYNHPKEGTHLRGKGKSLHVHV
QFFDDSPTRGWTGAKYIKPFSGSTAAETQKGGMFFSTKPEIKKAMKMADDAVTLDKQKRL
ELAVCMEPSDSEEDMEVEENSSASHDEEVKTKTPSRESKRKGQPKRRRIMIESDSDNEGS
DDEFKPEDSASSDEASSGVDEAGLSEPDSEAEDNSPVKVPLKRKRGIPDKASGPKKRLQN
EQSETPKRTSNVSTEAKLKLSSFSAPESFESQANTGGTGAVSIWEHEKFDWLQDGKRKDM
KRKRQTDADYDPSTLYIPDDFLNKCTPGVRKWWQLKSQNFDTVIFYKVGKFYELYHMDAV
IGVNELGLTFMKGTWAHSGFPEIAFGRFSDVLVQKGYKVSRVEQTETPEMMEARCKSMSH
PSKFDRVVRREICRIITKGTQTYSVLDGNPSESHSKYLLCFKEKMDDSSGQRRVYGVSFV
DTSVGKFHVGQFEDDRHCSRFRTLVAHFPPVQILFEKGNPSSDTKKVLKSCLSTSIQESL
QPTSQFWDASRTLKTLAEEAYFEKDFQPATGNGNLPSVLKSMTSESDSLALTPGEKCELA
LSALGACIYYLKKCLIDQELLSMANFEEYVPVDTDVEKAQTSSNFFAKTSRRMVLDGVTL
TNLEILQNGTNGSTEGTLLEKLDTCSTPFGKRLLKQWLCAPLCNPFSINDRLNAVEDLMA
LPGKVSEVSELLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAVMYEEITYSKKKIADFLS
TLEGFKVMREVISIMEDDVAHFKSSILKQIVCVKDKASHGRFPDLSAELKRWDTSFDHEK
ARKTGVITPKAGFDPDYDEALKDVKQAEQDLNEYLDKQRKRLGCKTVVYWGTAKNRYQME
IPENIADRNLPEEYTLKSTKKGFKRYWTKAIEKMFGDLVNAEERRDAALKDCMRRLFYNF
DKNYKEWQTAVECFAVLDVLISLSQYSQGGDGPVCRPEIVLQENGSPFLELKGSRHPCIT
KTFFGDDFIPNDILVGCKEEDSDDGSDEAHCVLVTGPNMGGKSTLLRQAGLQVVMAQLGC
YVPADSCRLTPVDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLLDELGRG
TATFDGTAIAGAVVKELSESIKCRTLFSTHYHSLVEDHSHSQSVRLGHMACMVENECEDP
SQETITFLYKFIKGACPKSYGFNAARLAHIPDEIIQVGHQKAREFESLTLSLKLFRELFL
ALDNGSPEGLALHKRLKLLQ
NT seq 4023 nt   +upstreamnt  +downstreamnt
atgtctaagcaaaaaaccctcttcagcttcttcaccaagtctccccctgtttccagcagc
accaagtccggcaaagtctcgtcttcccccactgaggccgatgttccctcctctgggggc
aaaaagtccagctcttcccctaaagagggagccaaggaaaaggcagcgggagccgcagcg
aggactcctggagggaaagctcccaaatccgcagcgcccagcactgcctgtgacttcaac
cctggagaccttgtttgggccaaaatgctgggtcatccttggtggccatctctggtctac
aatcacccaaaagaaggcacccacttaaggggcaaggggaagtcccttcatgtccatgtc
cagttttttgatgacagcccgacaagaggatggacaggtgcaaaatatatcaagcctttt
tcagggtccactgctgcagaaactcagaaaggaggcatgttttttagtaccaaaccagaa
ataaagaaagcaatgaaaatggcagacgatgccgtgacactagacaagcaaaagcgcctt
gaattggctgtgtgcatggaaccttcggattcagaggaggatatggaggttgaagagaac
tcttctgcaagtcacgatgaagaagtaaaaacaaagactccaagtcgggagagtaaacga
aaaggacagcccaaaagaagacgaattatgatagagtctgacagtgataatgaaggctct
gatgatgaattcaagccagaagacagtgctagtagtgatgaggccagcagtggggtggat
gaagctggactgtcagaaccagattctgaagctgaagacaatagcccagtcaaggtccca
ttaaagcgaaaaagagggatccctgacaaagcatctggcccaaaaaaacgcttgcaaaat
gaacaatctgaaacccccaagagaacaagcaatgtgtctacagaggccaagttaaagtta
tcctccttctctgcccctgagtcatttgaatcacaggcaaacactggtgggactggcgcg
gtttctatatgggaacatgagaagtttgattggctgcaagatgggaaaagaaaggatatg
aaacgtaaaaggcagactgatgctgattacgacccaagcaccttgtacattccagatgat
ttccttaataaatgtactccaggcgtgagaaaatggtggcagctcaaatctcagaacttt
gatacggttattttttacaaggttggcaagttttatgaactttatcacatggatgctgtc
attggggtgaatgagctgggcctgacattcatgaaaggaacgtgggctcattctggcttt
cccgagattgcttttggtcgcttttctgatgttctcgtacagaaaggctacaaagtatcc
agagtggaacaaacggaaacaccagagatgatggaagcccggtgcaagtcaatgtcgcat
ccaagtaaatttgacagggttgtaagaagagaaatatgcaggatcattactaaagggaca
cagacctacagtgtgttggatggtaatccatctgaaagccatagtaagtatcttctgtgc
ttcaaagaaaaaatggacgattcctctggtcaaaggagagtatacggcgtctcttttgtg
gacacctccgtagggaagtttcacgtcggtcagtttgaggatgaccgccattgttcacgc
tttagaactttggtggcccatttccctccagttcagatcttgttcgagaaaggcaaccct
tcttcagatacaaagaaagttttgaagagctgcctttcgacctctatccaagaaagcttg
cagcctacatctcagttttgggatgcctccagaacactaaaaacattagctgaagaagct
tactttgaaaaagactttcagcctgccactggcaatggtaacctgccgtctgttttgaaa
agcatgacttcagaaagtgactccttagcacttactcccggtgaaaagtgcgaattggct
ctttcggcacttggagcctgtatatattacctgaaaaaatgtcttatcgaccaagagctg
ctctccatggcaaactttgaagaatatgttcctgtggatactgatgtagaaaaagcccag
acttcaagtaatttctttgccaagacaagtcggcgcatggttcttgacggagtgactctt
acgaatctggaaatcctccagaatggaacaaacggttctacagaagggacgctgttggaa
aaactagacacctgctctaccccttttggcaagcgtctcttaaaacagtggctctgcgca
cccctttgtaatccattctccattaatgatcgtttaaatgcagtggaagatctcatggcc
cttcctgggaaagtgtctgaggttagcgagctcttaaagaaactgcccgatctcgagagg
ctgctgagcaagattcacagtattggttctccacttaaaagccagaaccatccagatagc
cgggctgtcatgtatgaggagatcacttacagcaagaagaagattgcagatttcttatct
accctggaggggttcaaagtcatgagagaagtgatcagtattatggaagatgatgttgct
cattttaagtcaagtattctcaaacagattgtttgtgttaaagataaagcttctcatggg
cgcttccccgatttatcggccgagctgaagagatgggatacgtcctttgatcacgagaaa
gcccgcaagaccggtgtgatcactccaaaagcgggtttcgatccggattacgacgaagcg
ttgaaagatgtcaaacaagccgagcaagatcttaacgagtatttggacaaacaacgcaaa
cgactcggctgtaaaaccgtcgtctattgggggacggccaagaaccgatatcaaatggaa
attcccgagaacatcgctgaccgcaatctgcctgaagagtacacgctaaaatccaccaaa
aaagggttcaagcgctactggaccaaggcaattgaaaagatgtttggagacctggtgaac
gcagaggaacgtagggatgccgcgcttaaggactgcatgaggaggctcttctataacttt
gataaaaactacaaggaatggcagactgctgtggaatgctttgccgtgttagatgttctg
ataagtttatctcagtacagtcaaggaggggacgggccggtgtgcagaccagagatagtg
ctacaggaaaatgggtcgccgtttttggagctgaaaggttcacgacacccctgcatcaca
aaaaccttttttggggatgatttcattccaaatgacattcttgttggctgcaaggaggag
gattctgatgacggcagtgatgaggctcactgtgtgctcgtcaccgggccaaacatggga
ggcaagtcgacccttttgagacaggcgggtctccaggttgttatggcccagttgggatgt
tacgtgccggcagactcctgcagactgactcctgtcgaccgggtcttcacacgactcgga
gcatctgacagaatcatggccggtgaaagcacgtttttcgtggaattgagtgaaacgtcg
agtatactgcagcacgcaacggaacattccctcgtgcttctcgatgaacttggaagaggc
acggctacatttgatggcacagctatagcgggtgcggttgtgaaggaactgtctgaaagc
atcaaatgccgaactttattttccacacactaccactccctggtggaggatcactctcac
agtcagtctgtacgtctcgggcacatggcttgtatggtggaaaacgaatgcgaggatccg
agtcaggagaccatcacgttcctttacaagttcattaagggggcgtgtcctaaaagctac
ggctttaacgctgccaggctggctcacattcctgacgaaattatccaggtcggccatcaa
aaagcaagagaattcgagagtcttaccctttccctcaagctcttcagagaactcttcctc
gcactggacaacggttcccccgagggcctcgctctccacaagcggctgaagttgctccaa
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (81)   

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