KEGG   Xenopus tropicalis (tropical clawed frog): 780122
Entry
780122            CDS       T01011                                 
Symbol
supt6h
Name
(RefSeq) transcription elongation factor SPT6
  KO
K11292  transcription elongation factor SPT6
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    780122 (supt6h)
   03036 Chromosome and associated proteins [BR:xtr03036]
    780122 (supt6h)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     780122 (supt6h)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    Other Histone chaperones and regulators
     780122 (supt6h)
SSDB
Motif
Pfam: SH2_2 YqgF HHH_7 HTH_44 SPT6_acidic Spt6_S1 Tex_N HHH_3 S1 HHH_9 Tex_YqgF SH2 oligo_HPY DUF4050
Other DBs
NCBI-GeneID: 780122
NCBI-ProteinID: XP_012812907
Xenbase: XB-GENE-990369
UniProt: A0A6I8Q980
Position
2:complement(34412663..34444180)
AA seq 1728 aa
MDFVESEAEESEGEYEEGTVPNTKKFTEDDDEEEEEENPEDQDEQGNLRGFINDEDDEED
MEEDDEGGSESGGSDEEVGHKKRKHTFDDRLEDDDFDLIEENLGVKVKRQKFRRVRKMSD
DEDEEEEDFGKEEHEKEAIAEEIFQDGEDEERRDVLDQPGAGPEDEDEDDDEESDIDDFI
VDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYNEFEKYDEDDEEMEEYDYEDDE
GDAATRVRPKKTAKKRVSRRSIFEIYEPSELESSHLTDQDNEIRTTDMPERFQLRTISVK
SAEDDELEEEAEWIYRNAFATPTISLQETNDYLERGQVGSNFNRKGPSTIQKIREALNFM
RNQHFEVPFIAFYRKEYVEPELNINDLWRVWQWDEKWTQLKLRKQNLIRLFEKMQAYQYE
QISSDPDKPLADGIRALDTVDMERLKDVKSMDELKDVYNHFLLYYGRDIPKMQNAAKSSQ
KKMKRIPEEGEEGADAGEQEEESSKGPELKQASRRDMYSICQIAGLDGLAKKFGLTPEQF
GENLRDSYQRHETEQFPAEPLELAKDYTCSQFTTPEAVLEGARYMVALQIAREPLVRQVL
RQTFQERAKVNIIPTKKGKKEIDEAHFAYAFKYLKNKPVKELRDDLFLKMCIAEEEQLLT
IEICIDMKDVEGYGDQTYFEEIKQFYYRDEFSHQVQEWNRQRTLAIERALKQFLYPQMAK
ELKNKLVLEAKDFVIKSCSRKLYNWLKVASYRPDTQVEEDDDFMEENQGKGIRVLGMAYS
SARDHPVFCSLINGEGEVTDFLRLPYFTKRKNAWREDERERKARDMETLKKFLISKKPHV
VAIASENRDAQMMVEDVKRVVQELEQGQQMSAIGVEMVDNELAVLYMNSKKSETDFRDYP
PVLRQAVSIARRIQDPLIEFAQVCSTDDDILCLKLHPLQEHVVKEELLNSLYCEFINRVN
EVGVDVNRAIAHPYTQALIQYVCGLGPRKGAHLLKILKQNNTRLENRTQLVTMCHMGPKV
FINCAGFVKIDTNSLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAG
ALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTTYRSPNPE
EVFNMLTRETPETFYIGKLITCNVTGIAHRRPQGETYDQAIRNDETGLWQCPFCQQDNFP
ELSEVWNHFDSGSCPGQAIGVKTRLDNSVTGFIPTKFISDKAVKRPEERVKVGMTVHCRI
MKINIEKFSVDLTCRTSDLMDKNNEWKLPKDTYYDFDTESADHKQEEEFKKKQQRTTYIK
RVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVCEGIYQHVDVREEG
KENAFSLGSTLWINNEEFEDLDEIIARFVQPMASFARDLINHKYFQDCNNGEKKKLEELL
IKTKKEKPTFIPYYISACKELPGKFLLGYQPRAKPRVEYVTVTPEGFRYRGQIFPTVNGL
FRWFKDHYQDPVPGITPSSSSRTRTPASVNATPANINLADLTRAVNALPQNMTSQMFNAI
AAVTGQHGQNPNATPAQWASSQYGYGGGSGGGSSAYHVFATPAQQPVATPLMTPSYSYAT
PSQPITTPQYHQLPPSATPTPAPTPQSSHSQSSSHSQSSSRHRQQSKSNNHTAIDWGKMA
EQWLQEKEAERRKQKQRVTPRPSPSPMIESTPMSVAGDATPLLDEMDR
NT seq 5187 nt   +upstreamnt  +downstreamnt
atggattttgttgagagcgaagcagaggaatcggagggagaatatgaagaaggaactgtg
cctaatactaagaaatttacggaagatgatgatgaagaggaggaagaggaaaatccagag
gatcaggatgagcaggggaacctgagaggttttatcaatgatgaagatgacgaagaagac
atggaagaagatgatgaagggggaagtgaatctggtggctcagatgaggaagttggccac
aaaaagagaaagcacacatttgatgatcgcctagaagatgatgattttgaccttattgaa
gagaacttgggtgtcaaagtcaaacgtcaaaagttcagaagagttcgaaagatgtctgat
gatgaagatgaagaagaagaggactttggaaaagaagagcatgagaaagaagcaatagct
gaggaaatcttccaggatggagaagatgaggaaagacgtgatgttttggatcagcccggt
gcaggcccagaggatgaagatgaggatgacgatgaggagtcagatattgatgattttatc
gttgatgatgacgggcagccactgaaaaagcctaaatggaggaagaagttgccaggatat
actgatgctgctttgcaggaagctcaggaaatctttggtgtggattttgattataatgaa
tttgagaaatatgatgaggatgatgaagagatggaagagtatgactatgaggatgatgag
ggagatgcagcaacaagagttcgacccaagaaaactgccaaaaagcgtgtgagcagacgc
agcatttttgaaatttatgaacccagtgaactggagagcagccacctaacggaccaggac
aatgagatccgaaccacagatatgccagaaaggttccagcttcggacgatatcggttaag
tctgctgaagatgatgaactggaagaggaagcagagtggatttacaggaatgcttttgca
acaccaacaatatctttacaggaaacaaacgactacctagagcgtgggcaagttggcagc
aacttcaacaggaaagggccaagtacgatacagaagatcagggaagcactaaacttcatg
agaaatcagcattttgaggttccctttattgctttctaccgaaaggaatatgtagaacca
gagttaaatatcaatgacttgtggagagtctggcagtgggatgaaaagtggacccagctg
aaactgcgaaagcaaaatctgattagactttttgagaagatgcaagcctaccaatatgaa
cagatatcttcagaccccgacaagccattagctgatggaataagagccctagatacagtg
gacatggaaaggctgaaggatgtgaaatccatggatgaactaaaggatgtgtacaaccac
tttttgctatactatggcagagatatccctaaaatgcagaatgcggccaaatccagccag
aagaagatgaaacggatcccggaagaaggagaggagggggctgatgcaggagaacaagaa
gaggagtcatccaagggtccagaattaaaacaagcttctcgtagagatatgtactcaatc
tgccaaattgctggtcttgatggtctggccaaaaaatttggtttaacacccgaacaattt
ggtgagaatctgagagacagttaccagcgccacgagactgaacagttccctgctgaacca
ctagaacttgccaaggattacacttgcagccagtttacaacacctgaggctgtcctggaa
ggtgctcgctacatggttgccctgcagattgccagagagcctctagtcaggcaggttctg
agacaaacctttcaagaacgggccaaagttaatattattccaaccaagaaggggaagaaa
gaaattgacgaagcccattttgcctacgccttcaagtatctgaagaacaaacctgttaag
gagctgcgagacgacctgtttcttaagatgtgtatagctgaggaagaacaactgcttacc
attgaaatatgcattgacatgaaggatgtagagggttatggagaccagacttattttgag
gagatcaagcagttctattacagagatgagttcagtcatcaagtgcaggagtggaacaga
cagcgtacgttggccattgagcgggcactaaagcaatttctatatccacaaatggcaaag
gagttgaaaaacaaacttgttctggaagccaaggactttgttatcaagtcctgtagccgt
aaactgtacaactggcttaaagtggcatcataccggccagacacccaggtggaagaagat
gatgatttcatggaggaaaaccaggggaaaggaatcagagtattaggcatggcatattct
tctgctagagatcaccctgtgttctgttcgctgattaatggagagggtgaggtcacagac
ttcctccgtctcccatacttcaccaagagaaagaatgcctggagggaggacgagagggaa
cgaaaagcacgtgatatggaaacgcttaagaagtttttaataagcaagaagcctcatgtt
gttgccattgctagtgaaaatagggatgcccagatgatggttgaagatgttaaacgcgtt
gtgcaggaacttgagcaggggcagcaaatgtccgctattggagtggagatggtggataat
gaattggctgtcttgtatatgaacagcaaaaaatctgagactgatttccgagactatcca
ccagttcttcgtcaggccgtttccattgctcgccgcattcaggaccccttgattgaattt
gctcaggtctgcagcactgatgacgatattctgtgcttgaaactgcatccgctgcaggaa
catgtagttaaagaagagctattaaattccctctattgcgagttcattaaccgagtaaat
gaggtgggagttgatgttaacagagccattgctcacccttatacacaggctctgatccag
tatgtctgtggacttggaccacgtaaaggtgcacatctgctcaaaattttaaaacagaac
aacacacgccttgaaaaccgcacacagttggtcactatgtgccacatgggaccaaaggtt
ttcatcaattgtgccggctttgttaagatagacacaaattctcttggtgatagtacggac
tcctatattgaggtgttggatggttctcgtgtacatcctgagacctatgaatgggccagg
aagatggctgttgatgcattagaatatgatgagtcggcagaggatgccaaccctgcagga
gccctggaggagattctggaaaacccagaaagattaaaagacttagatttagatgctttt
gcagaggagctcgagagacaggggtacggtgataaacacattactttgtatgatattcgt
gctgagctcagctgtagatacaaagacctcaggacaacttatcggtcacctaacccagag
gaggtctttaacatgttaactcgggagacccctgagacattctatataggcaagttgatc
acttgtaatgtgactggaattgcacacagacgaccccaaggagaaacctatgatcaggct
attaggaatgatgaaactggtctctggcagtgtccattttgccaacaggataacttccca
gaacttagtgaggtatggaatcactttgacagtggctcttgtcctggtcaggcaattggg
gttaaaacaaggctagacaatagtgtgactggattcatcccaaccaagtttattagtgat
aaagcggtgaagcgaccagaggaacgagtaaaggtgggaatgactgttcattgccggata
atgaagattaacattgaaaaatttagtgttgacttgacctgccggacatcagacctgatg
gacaagaacaatgagtggaagctgcccaaggacacatattatgactttgacacagagtcg
gctgatcataagcaagaagaggaatttaagaagaaacagcagcgtacaacatacataaag
cgagttattgcccacccttcattccacaacattaattttaaacaagctgaaaagatgatg
gaaaccatggaccaaggtgatgtaatcatccgccccagcagtaagggtgaaaaccatttg
actgtaacatggaaagtctgtgaaggtatttaccagcatgtggatgtaagggaggaaggc
aaggaaaatgctttcagtttgggatctactctctggattaacaatgaggagtttgaggac
cttgatgaaatcattgccagatttgtgcagccgatggcatcttttgcaagggatctgata
aaccataaatattttcaagattgtaacaatggagaaaaaaaaaaactagaagaacttcta
ataaaaacaaagaaggaaaagccaactttcattccatattacatctctgcatgcaaggaa
cttcctgggaaattccttttggggtaccagccacgagctaaaccaagggtggaatatgtg
actgtgacgcctgaaggctttcgttacaggggacagatttttccaactgtcaatggactt
tttaggtggttcaaagaccattaccaggaccctgtaccaggtatcacaccaagcagcagc
agcagaacacggactccagcctctgtcaatgccaccccagccaacatcaaccttgcagat
ctaacccgtgcagtcaatgccctcccgcaaaacatgacatcgcagatgtttaatgctatt
gctgccgtaacggggcagcacggacagaatcccaatgccacacctgcacagtgggcatcc
agccagtatggctatggtggcggcagtggtggtggcagcagcgcatatcacgtttttgct
acccctgcccagcagcctgtggccacgcctctgatgaccccaagctattcgtacgcaacc
ccaagccagccaatcacaactccccagtatcatcagcttccgcccagcgcaacacccacc
ccagcaccaactcctcagtcctctcattcgcagagctccagccattcacaaagcagttcc
agacacagacagcagtccaaatcaaacaatcatacagctatagactggggaaaaatggca
gagcagtggctgcaggaaaaggaagcagaacggaggaagcagaagcagcgggtaacaccg
cgcccatctcccagtcccatgatcgagagcacgcctatgtcagtggcaggggatgccact
ccgcttctggatgaaatggaccgatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (14)   
   Pfam (14)   
All databases (32)   

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