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Transfer RNA Biogenesis - Pseudomonas entomophila
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D PSEEN2683 putative Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D PSEEN2564 putative Ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D PSEEN0421 cca; Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
D PSEEN0615 conserved hypothetical protein RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PSEEN1639 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PSEEN4105 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D PSEEN4692 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PSEEN4813 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PSEEN0982 putative Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSEEN1220 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSEEN2086 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PSEEN0323 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PSEEN1255 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PSEEN4096 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D PSEEN3875 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSEEN1963 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PSEEN2216 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PSEEN2087 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PSEEN4446 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PSEEN1022 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PSEEN1967 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PSEEN1968 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PSEEN0464 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PSEEN4511 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
D PSEEN5091 dtd; D-tyrosyl tRNA(tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
C AARS associated factors
D PSEEN0456 conserved hypothetical protein; Histidine triad family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D PSEEN0308 trmB; tRNA(guanine-7)methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PSEEN4118 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PSEEN1689 truA; tRNA-pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PSEEN0797 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PSEEN4193 truD; tRNA pseudouridine synthase D, TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
C Thiolation factors
D PSEEN3349 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSEEN1010 iscS-1; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D PSEEN0027 conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PSEEN4944 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PSEEN5555 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PSEEN5554 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PSEEN0991 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D PSEEN0246 cysQ; 3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D PSEEN5558 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D PSEEN_RNA4810200R rnpB; RNA component of RNAseP (ribozyme) K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D PSEEN2683 putative Ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D PSEEN1207 rnt; ribonuclease T K03683 rnt; ribonuclease T [EC:3.1.13.-]
D PSEEN5439 rph; ribonuclease PH (RNase PH), tRNA nucleotidyltransferase K00989 rph; ribonuclease PH [EC:2.7.7.56]
D PSEEN4035 rnd; ribonuclease D, processes tRNA K03684 rnd; ribonuclease D [EC:3.1.13.5]
D PSEEN2564 putative Ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
D PSEEN0421 cca; Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic phosphodiesterase; Phosphatase] K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
D PSEEN0615 conserved hypothetical protein RtcB K14415 RTCB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
C Other tRNA splicing factors
D PSEEN2137 putative 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
D PSEEN0810 putative ABC transporter, ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D PSEEN4813 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D PSEEN4105 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D PSEEN0464 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D PSEEN4511 trpS; tryptophanyl-tRNA synthetase TrpS K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D PSEEN1963 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D PSEEN4692 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D PSEEN1255 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D PSEEN3875 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D PSEEN4446 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D PSEEN0982 putative Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSEEN1220 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D PSEEN2216 serS; seryl-tRNA synthetase; also charges selenocystein tRNA with serine K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D PSEEN4096 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D PSEEN0017 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D PSEEN0016 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D PSEEN2087 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D PSEEN1639 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D PSEEN2086 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D PSEEN0323 argS; arginine tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D PSEEN1967 pheS; phenylalanyl-tRNA synthetase, alpha-subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D PSEEN1968 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D PSEEN1022 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D PSEEN4727 glutamyl-tRNA synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D PSEEN5091 dtd; D-tyrosyl tRNA(tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D PSEEN1199 conserved hypothetical protein; YbaK_EbsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D PSEEN0168 conserved hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
D PSEEN3691 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D PSEEN4861 Dihydrouridine synthase TIM-barrel protein nifR3 K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D PSEEN1646 putative tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
C Methylthiotransferases
C Methyltransferases
D PSEEN4372 putative methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D PSEEN4373 putative methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D PSEEN0660 putative methyltransferase K06219 smtA; tRNA 5-carboxymethoxyuridine methyltransferase [EC:2.1.1.-]
D PSEEN4780 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D PSEEN0308 trmB; tRNA(guanine-7)methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D PSEEN4258 trmD; tRNA (guanine-1-)-methyltransferase. K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D PSEEN5555 trmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D PSEEN1006 putative tRNA/rRNA methyltransferase, TrmH family, group 1 K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D PSEEN2384 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D PSEEN0384 putative RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D PSEEN4118 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
C Psudouridine synthases
D PSEEN1689 truA; tRNA-pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D PSEEN0797 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D PSEEN4193 truD; tRNA pseudouridine synthase D, TruD K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D PSEEN1443 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PSEEN3759 putative pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
C Thiolation factors
D PSEEN2200 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D PSEEN1350 putative PP-loop ATPase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D PSEEN3754 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PSEEN4069 conserved hypothetical protein K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D PSEEN2221 conserved hypothetical protein DsrH-like K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D PSEEN2222 putative intracellular sulfur oxidation protein DsrE-like protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D PSEEN2223 putative intracellular sulfur oxidation protein, DsrE-like K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D PSEEN2220 putative sulfite reductase, gamma subunit DsrC-like K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D PSEEN1012 iscA; iron-sulfur cluster assembly protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D PSEEN3349 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSEEN1010 iscS-1; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D PSEEN4300 conserved hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D PSEEN5554 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D PSEEN4944 miaA; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D PSEEN3516 conserved hypothetical protein K06169 miaE; tRNA 2-(methylsulfanyl)-N6-isopentenyladenosine37 hydroxylase [EC:1.14.99.69]
D PSEEN1470 putative oxidoreductase, FAD-dependent K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D PSEEN0999 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein) K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D PSEEN4083 conserved hypothetical protein; ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D PSEEN2520 putative 6-pyruvoyl-tetrahydropterin synthase-like K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PSEEN1910 putative 6-pyruvoyl tetrahydrobiopterin synthase SscR K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D PSEEN4084 putative radical activating enzyme K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PSEEN2518 conserved hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D PSEEN3702 putative GTP cyclohydrolase I K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D PSEEN4949 putative iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D PSEEN0991 selD; selenophosphate synthase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D PSEEN0990 conserved hypothetical protein K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D PSEEN1000 tgt; queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D PSEEN0391 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D PSEEN4203 putative cell cycle protein MesJ K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D PSEEN1266 putative glycoprotein endopeptidase metalloprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D PSEEN0027 conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D PSEEN0417 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D PSEEN4947 conserved hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D PSEEN4230 conserved hypothetical protein; putative ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
B tRNA degradation factors
C PSEEN4933 rnr; exoribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C PSEEN0799 pnp; polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C PSEEN4876 putative nucleic acid binding protein, PIN domain K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024