+F Repair protein KO #

  DNA Repair and Recombination Proteins - Rickettsia prowazekii Madrid E

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E RP351 RP351; DNA-3-METHYLADENINE GLYCOSIDASE (mpg) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RP746 RP746; ENDONUCLEASE III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D RP399 RP399; DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E RP845 RP845; unknown K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E RP351 RP351; DNA-3-METHYLADENINE GLYCOSIDASE (mpg) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E RP746 RP746; ENDONUCLEASE III (nth) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E RP676 RP676; EXODEOXYRIBONUCLEASE III (xthA2) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E RP260 RP260; EXODEOXYRIBONUCLEASE III (xthA1) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E RP528 RP528; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E RP835 RP835; EXCINUCLEASE ABC SUBUNIT A (uvrA) K03701 uvrA; excinuclease ABC subunit A E RP203 RP203; EXCINUCLEASE ABC SUBUNIT B (uvrB) K03702 uvrB; excinuclease ABC subunit B E RP572 RP572; EXCINUCLEASE ABC SUBUNIT C (uvrC) K03703 uvrC; excinuclease ABC subunit C E RP447 RP447; DNA HELICASE II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F RP140 RP140; DNA-DIRECTED RNA POLYMERASE BETA CHAIN (rpoB) K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F RP141 RP141; DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F RP635 RP635; DNA-DIRECTED RNA POLYMERASE ALPHA CHAIN (rpoA) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F RP578 RP578; unknown K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F RP598 RP598; TRANSCRIPTION-REPAIR COUPLING FACTOR (mfd) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E RP298 RP298; DNA MISMATCH REPAIR PROTEIN MUTS (mutS) K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E RP880 RP880; DNA MISMATCH REPAIR PROTEIN MUTL (mutL) K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E RP675 RP675; EXODEOXYRIBONUCLEASE LARGE SUBUNIT (xseA) K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E RP350 RP350; EXODEOXYRIBONUCLEASE SMALL SUBUNIT (xseB) K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E RP778 RP778; DNA POLYMERASE III, ALPHA CHAIN (dnaE) K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E RP419 RP419; DNA POLYMERASE III, BETA CHAIN (dnaN) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E RP872 RP872; unknown K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E RP189 RP189; unknown K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E RP172 RP172; DNA POLYMERASE III, DELTA SUBUNIT (holB) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E RP732 RP732; DNA POLYMERASE III, EPSILON CHAIN (dnaQ) K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E RP865 RP865; DNA POLYMERASE III SUBUNITS GAMMA AND TAU (dnaX) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E RP447 RP447; DNA HELICASE II (uvrD) K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E RP836 RP836; SINGLE-STRAND BINDING PROTEIN (ssb) K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E RP761 RP761; RECA PROTEIN (recA) K03553 recA; recombination protein RecA E RP385 RP385; HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E RP386 RP386; HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RP119 RP119; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E RP540 RP540; POSSIBLE PRIMOSOMAL PROTEIN N (priA) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E RP761 RP761; RECA PROTEIN (recA) K03553 recA; recombination protein RecA E RP546 RP546; DNA REPAIR PROTEIN RADA HOMOLOG (radA) K04485 radA; DNA repair protein RadA/Sms E RP029 RP029; RECF PROTEIN (recF) K03629 recF; DNA replication and repair protein RecF E RP593 RP593; ATP-DEPENDENT DNA HELICASE RECG (recG) K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E RP528 RP528; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E RP438 RP438; RECOMBINATION PROTEIN RECR (recR) K06187 recR; recombination protein RecR E RP182 RP182; DNA REPAIR PROTEIN RECN (recN) K03631 recN; DNA repair protein RecN (Recombination protein N) E RP385 RP385; HOLLIDAY JUNCTION DNA HELICASE RUVA (ruvA) K03550 ruvA; holliday junction DNA helicase RuvA E RP386 RP386; HOLLIDAY JUNCTION DNA HELICASE RUVB (ruvB) K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E RP119 RP119; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC (ruvC) K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E RP734 RP734; ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E RP403 RP403; unknown K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F RP206 RP206; DNA GYRASE SUBUNIT A (gyrA) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F RP580 RP580; DNA GYRASE SUBUNIT B (gyrB2) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F RP326 RP326; DNA TOPOISOMERASE I (topA) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F RP171 RP171; DNA-BINDING PROTEIN HU (hupA) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F RP528 RP528; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ (recJ) K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F RP438 RP438; RECOMBINATION PROTEIN RECR (recR) K06187 recR; recombination protein RecR F RP720 RP720; DNA LIGASE (lig) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F RP708 RP708; INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) K04764 ihfA; integration host factor subunit alpha E Supressor F RP835 RP835; EXCINUCLEASE ABC SUBUNIT A (uvrA) K03701 uvrA; excinuclease ABC subunit A F RP203 RP203; EXCINUCLEASE ABC SUBUNIT B (uvrB) K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D RP761 RP761; RECA PROTEIN (recA) K03553 recA; recombination protein RecA D RP182 RP182; DNA REPAIR PROTEIN RECN (recN) K03631 recN; DNA repair protein RecN (Recombination protein N) D RP836 RP836; SINGLE-STRAND BINDING PROTEIN (ssb) K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D RP399 RP399; DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (dut) K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D RP513 RP513; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN (nrdA) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D RP512 RP512; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024