+F Repair protein KO #

  DNA Repair and Recombination Proteins - Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D SA2335 adaB; probable methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SA0646 ORFID:SA0646; hypothetical protein, similar to deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SA0538 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SA2134 ORFID:SA2134; hypothetical protein, similar to DNA-3-methyladenine glycosidase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SA1685 ORFID:SA1685; hypothetical protein, similar to A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SA1285 nth; endonuclease-like protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D SA2278 ORFID:SA2278; hypothetical protein, similar to mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SA1612 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D SA2335 adaB; probable methylated DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D SA0646 ORFID:SA0646; hypothetical protein, similar to deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E SA0538 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E SA2134 ORFID:SA2134; hypothetical protein, similar to DNA-3-methyladenine glycosidase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E SA1685 ORFID:SA1685; hypothetical protein, similar to A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E SA1489 tag; DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E SA1512 ORFID:SA1512; hypothetical protein, similar to formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E SA1285 nth; endonuclease-like protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E SA1386 ORFID:SA1386; hypothetical protein, similar to endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E SA1462 ORFID:SA1462; hypothetical protein, similar to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E SA1720 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E SA1513 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E SA0714 uvrA; exinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E SA0713 uvrB; exinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E SA0993 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E SA1721 pcrA; ATP-depentend DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SA1513 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E SA1720 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F SA0500 rpoB; RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F SA0501 rpoC; RNA polymerase beta-prime chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F SA2023 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F SA1930 rpoE; probable DNA-directed RNA polymerase delta subunit K03048 rpoE; DNA-directed RNA polymerase subunit delta F SA1053 conserved hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F SA0461 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E SA1137 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E SA0991 mutS2; MutS-like protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E SA1138 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E SA1354 ORFID:SA1354; hypothetical protein, similar to exodeoxyribonuclease large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E SA1353 ORFID:SA1353; hypothetical protein, similar to exodeoxyribonuclease, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E SA1525 dnaE; DNA polymerase III, alpha chain K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E SA1107 polC; DNA polymerase III, alpha chain PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E SA0002 dnaN; DNA polymerase III, beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E SA1415 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E SA0442 holB; probable DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E SA1710 ORFID:SA1710; hypothetical protein, similar to DNA polymerase III, alpha chain PolC type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E SA0436 dnaX; DNA polymerase III gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E SA1720 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E SA1721 pcrA; ATP-depentend DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E SA0353 ssb; single-strand DNA-binding protein of phage phi PVL K03111 ssb; single-strand DNA-binding protein E SA1792 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E SA1899 ORFID:SA1899; hypothetical protein, similar to single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E SA1447 ORFID:SA1447; hypothetical protein, similar to deoxyribonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E SA1128 recA; RecA protein K03553 recA; recombination protein RecA E SA1468 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SA1467 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E SA1055 priA; PriA, primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E SA1181 ORFID:SA1181; hypothetical protein, similar to exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E SA1180 ORFID:SA1180; hypothetical protein, similar to exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E SA1128 recA; RecA protein K03553 recA; recombination protein RecA E SA0484 radA; DNA repair protein homologue; ORFID:SA0484 K04485 radA; DNA repair protein RadA/Sms E SA0004 recF; DNA repair and genetic recombination protein K03629 recF; DNA replication and repair protein RecF E SA1070 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E SA1462 ORFID:SA1462; hypothetical protein, similar to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E SA1395 ORFID:SA1395; hypothetical protein, similar to DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E SA0438 recR; recombination protein K06187 recR; recombination protein RecR E SA1350 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E SA1282 recU; ORFID:SA1282; recombination protein U homolog K03700 recU; recombination protein U E SA1468 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E SA1467 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E SA0828 ORFID:SA0828; hypothetical protein, similar to ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E SA0827 ORFID:SA0827; hypothetical protein, similar to ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E SA1181 ORFID:SA1181; hypothetical protein, similar to exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E SA1180 ORFID:SA1180; hypothetical protein, similar to exonuclease SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F SA0006 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F SA0005 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F SA1093 DNA topoisomerase I topA homolog; ORFID:SA1093 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F SA1305 hu; DNA-binding protein II K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F SA1794 hypothetical protein K07455 recT; recombination protein RecT F SA1462 ORFID:SA1462; hypothetical protein, similar to single-strand DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F SA1395 ORFID:SA1395; hypothetical protein, similar to DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F SA0438 recR; recombination protein K06187 recR; recombination protein RecR F SA1720 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F SA0676 recQ; probable DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SA1313 probable ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F SA0714 uvrA; exinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F SA0713 uvrB; exinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D SA1711 ORFID:SA1711; hypothetical protein, similar to DNA-damage inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D SA1196 ORFID:SA1196; hypothetical protein, similar to DNA-damage repair protein K03502 umuC; DNA polymerase V C Other SOS response factors D SA1128 recA; RecA protein K03553 recA; recombination protein RecA D SA1174 lexA; SOS regulatory LexA protein K01356 lexA; repressor LexA [EC:3.4.21.88] D SA1350 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D SA0353 ssb; single-strand DNA-binding protein of phage phi PVL K03111 ssb; single-strand DNA-binding protein D SA1792 single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D SA1899 ORFID:SA1899; hypothetical protein, similar to single strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D SA1690 conserved hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D SA0990 DNA-dependent DNA polymerase beta chain K02347 polX; DNA polymerase (family X) C DNA helicases D SA1288 dinG; probable ATP-dependent DNA helicase dinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D SA2278 ORFID:SA2278; hypothetical protein, similar to mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SA1612 conserved hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D SA0686 nrdE; ribonuceloside diphosphate reductase major subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D SA0687 nrdF; ribonucleoside-diphosphate reductase minor subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D SA1526 conserved hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024