+F Repair protein KO
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DNA Repair and Recombination Proteins - Synechocystis sp. PCC 6803
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D slr0854 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E slr1822 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D sll1045 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D slr0920 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D slr1134 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D slr0854 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D slr1343 unknown protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
C BER (base exicision repair)
D DNA glycosylases
E slr0231 unknown protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E slr1689 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E slr1822 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E sll1854 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E sll1354 recJ; single-strand-DNA-specific exonuclease; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E slr1844 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E sll0459 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E sll0865 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E sll1143 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E sll1121 unknown protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F sll1787 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F sll1789 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F slr1265 rpoC1; RNA polymerase gamma-subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F sll1818 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F ssl2982 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F sll0377 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E sll1165 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
E sll1772 mutS; DNA mismatch repair protein; MutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E slr1199 mutL; DNA mismatch repair protein; MutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
E sll1572 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E slr0603 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E slr0965 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E sll0544 unknown protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E slr0446 dnaX_and_dnaZ; DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E sll1360 dnaX; DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E sll1143 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E sll1121 unknown protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E slr0925 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E slr1803 mbpA; adenine-specific DNA metylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
E sll0729 modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E sll7106 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E sll0569 recA; RecA gene product K03553 recA; recombination protein RecA
E sll0876 ruvA; Holliday junction DNA helicase; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E sll0613 ruvB; Holliday junction DNA helicase; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E sll0896 Holliday juction resolvase; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E sll0270 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E slr1048 unknown protein K03546 sbcC; DNA repair protein SbcC/Rad50
E sll0021 unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E sll0569 recA; RecA gene product K03553 recA; recombination protein RecA
E slr0448 sms; sms protein K04485 radA; DNA repair protein RadA/Sms
E sll1277 recF; RecF protein K03629 recF; DNA replication and repair protein RecF
E slr0020 recG; DNA recombinase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E sll1354 recJ; single-strand-DNA-specific exonuclease; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E slr0181 unknown protein K03584 recO; DNA repair protein RecO (recombination protein O)
E slr1426 recR; recombination protein K06187 recR; recombination protein RecR
E sll1520 recN; DNA repair protein; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
E sll0876 ruvA; Holliday junction DNA helicase; RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E sll0613 ruvB; Holliday junction DNA helicase; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E sll0896 Holliday juction resolvase; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E slr7071 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E slr7016 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
E slr7092 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
E slr1048 unknown protein K03546 sbcC; DNA repair protein SbcC/Rad50
E sll0021 unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F sll1941 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F slr0417 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F sll2005 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F slr2058 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F sll1712 DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F sll1354 recJ; single-strand-DNA-specific exonuclease; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F slr0181 unknown protein K03584 recO; DNA repair protein RecO (recombination protein O)
F slr1426 recR; recombination protein K06187 recR; recombination protein RecR
F sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F slr1536 recQ; ATP-dependent DNA helicase; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F slr1844 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F sll0459 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D slr0790 umuC; UmuC protein K03502 umuC; DNA polymerase V
D sll5123 SOS mutagenesis and repair, UmuD protein homolog K03503 umuD; DNA polymerase V [EC:3.4.21.-]
C Other SOS response factors
D sll0569 recA; RecA gene product K03553 recA; recombination protein RecA
D sll1626 lexA; SOS function regulatory protein K01356 lexA; repressor LexA [EC:3.4.21.88]
D sll1520 recN; DNA repair protein; RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D slr0925 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D sll1045 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D slr0920 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D slr1134 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D slr1164 nrdA; ribonucleotide reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D slr0591 unknown protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024