+F Repair protein KO #

  DNA Repair and Recombination Proteins - Synechocystis sp. PCC 6803

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D slr0854 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E slr1822 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D sll1045 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D slr0920 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D slr1134 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D slr0854 phr; deoxyribopyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D slr1343 unknown protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E slr0231 unknown protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E slr1689 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E slr1822 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E sll1854 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E sll1354 recJ; single-strand-DNA-specific exonuclease; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E slr1844 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E sll0459 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E sll0865 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E sll1143 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E sll1121 unknown protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F sll1787 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F sll1789 rpoC2; RNA polymerase beta prime subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F slr1265 rpoC1; RNA polymerase gamma-subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F sll1818 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F ssl2982 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F sll0377 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E sll1165 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E sll1772 mutS; DNA mismatch repair protein; MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E slr1199 mutL; DNA mismatch repair protein; MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E sll1572 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E slr0603 dnaE; DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E slr0965 dnaN; DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E sll0544 unknown protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E slr0446 dnaX_and_dnaZ; DNA polymerase III subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E sll1360 dnaX; DNA polymerase III subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E sll1143 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E sll1121 unknown protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E slr0925 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E slr1803 mbpA; adenine-specific DNA metylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E sll0729 modification methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E sll7106 exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E sll0569 recA; RecA gene product K03553 recA; recombination protein RecA E sll0876 ruvA; Holliday junction DNA helicase; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E sll0613 ruvB; Holliday junction DNA helicase; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E sll0896 Holliday juction resolvase; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E sll0270 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E slr1048 unknown protein K03546 sbcC; DNA repair protein SbcC/Rad50 E sll0021 unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E sll0569 recA; RecA gene product K03553 recA; recombination protein RecA E slr0448 sms; sms protein K04485 radA; DNA repair protein RadA/Sms E sll1277 recF; RecF protein K03629 recF; DNA replication and repair protein RecF E slr0020 recG; DNA recombinase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E sll1354 recJ; single-strand-DNA-specific exonuclease; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E slr0181 unknown protein K03584 recO; DNA repair protein RecO (recombination protein O) E slr1426 recR; recombination protein K06187 recR; recombination protein RecR E sll1520 recN; DNA repair protein; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E sll0876 ruvA; Holliday junction DNA helicase; RuvA K03550 ruvA; holliday junction DNA helicase RuvA E sll0613 ruvB; Holliday junction DNA helicase; RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E sll0896 Holliday juction resolvase; RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E slr7071 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E slr7016 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E slr7092 hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E slr1048 unknown protein K03546 sbcC; DNA repair protein SbcC/Rad50 E sll0021 unknown protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F sll1941 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F slr0417 gyrA; DNA gyrase A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F sll2005 gyrB; DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F slr2058 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F sll1712 DNA binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F sll1354 recJ; single-strand-DNA-specific exonuclease; RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F slr0181 unknown protein K03584 recO; DNA repair protein RecO (recombination protein O) F slr1426 recR; recombination protein K06187 recR; recombination protein RecR F sll1209 lig; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F slr1536 recQ; ATP-dependent DNA helicase; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F slr1844 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F sll0459 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D slr0790 umuC; UmuC protein K03502 umuC; DNA polymerase V D sll5123 SOS mutagenesis and repair, UmuD protein homolog K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D sll0569 recA; RecA gene product K03553 recA; recombination protein RecA D sll1626 lexA; SOS function regulatory protein K01356 lexA; repressor LexA [EC:3.4.21.88] D sll1520 recN; DNA repair protein; RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D slr0925 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D sll1045 mutT; mutator MutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D slr0920 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D slr1134 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D slr1164 nrdA; ribonucleotide reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D slr0591 unknown protein K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024