+D GENES KO
#
KEGG Orthology (KO) - Actinobacillus pleuropneumoniae L20 (serotype 5b)
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:apl00010]
D APL_1137 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_1450 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APL_0624 glpX; fructose-1,6-bisphosphatase class II GlpX K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APL_1250 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APL_1925 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D APL_0434 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D APL_1251 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D APL_0832 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APL_1113 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APL_0187 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APL_0773 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APL_0772 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APL_1959 adhI; Alcohol dehydrogenase 1 K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APL_0996 galM; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D APL_1919 hypothetical protein K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15]
D APL_0800 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D APL_1324 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
C 00020 Citrate cycle (TCA cycle) [PATH:apl00020]
D APL_0455 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D APL_0454 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0451 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D APL_0452 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D APL_1529 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APL_1528 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APL_1527 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D APL_1526 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D APL_1757 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D APL_1296 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APL_1414 mqo; putative malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D APL_0800 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D APL_0773 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APL_0772 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:apl00030]
D APL_1137 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APL_1311 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D APL_1310 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D APL_1305 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D APL_1820 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D APL_0983 tktA; transketolase 2 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D APL_0062 mipB; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D APL_1453 rpiA; ribose-5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6]
D APL_1015 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D APL_1673 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D APL_0775 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D APL_1018 eda; putative KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D APL_1565 putative gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APL_1666 gntK; thermosensitive gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D APL_1019 kdgK; 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D APL_1250 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APL_1450 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APL_0624 glpX; fructose-1,6-bisphosphatase class II GlpX K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:apl00040]
D APL_0651 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APL_1573 2,3-diketo-L-gulonate reductase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D APL_1564 lyx; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D APL_1698 ulaD; Probable 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D APL_1703 Putative hexulose-6-phosphate isomerase (HUMPI) K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D APL_1704 Probable sugar isomerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D APL_1820 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D APL_1907 xylB; Xylulose kinase (Xylulokinase) K00854 xylB; xylulokinase [EC:2.7.1.17]
D APL_1908 xylA; Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D APL_1684 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D APL_1685 fucK; L-fuculokinase K00879 fucK; L-fuculokinase [EC:2.7.1.51]
D APL_1687 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:apl00051]
D APL_2034 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D APL_1395 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D APL_0591 pgm; phosphoglucomutase/phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APL_0652 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APL_1684 fucI; L-fucose isomerase K01818 fucI; L-fucose/D-arabinose isomerase [EC:5.3.1.25 5.3.1.3]
D APL_1685 fucK; L-fuculokinase K00879 fucK; L-fuculokinase [EC:2.7.1.51]
D APL_1687 fucA; L-fuculose phosphate aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_1450 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APL_0624 glpX; fructose-1,6-bisphosphatase class II GlpX K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APL_1629 mtlD; mannitol-1-phosphate 5-dehydrogenase K00009 mtlD; mannitol-1-phosphate 5-dehydrogenase [EC:1.1.1.17]
D APL_0344 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D APL_1908 xylA; Xylose isomerase K01805 xylA; xylose isomerase [EC:5.3.1.5]
D APL_1250 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APL_1925 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D APL_0343 fruA; PTS system fructose-specific EIIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D APL_1391 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1662 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1661 mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1392 ptnC; mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1393 ptnD; mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1660 mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1630 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D APL_1213 hypothetical protein K24204 hxpB; mannitol-1-/sugar-/sorbitol-6-/2-deoxyglucose-6-phosphatase [EC:3.1.3.22 3.1.3.23 3.1.3.50 3.1.3.68]
C 00052 Galactose metabolism [PATH:apl00052]
D APL_0996 galM; aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D APL_0995 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D APL_0994 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D APL_1301 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D APL_0651 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APL_0997 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D APL_1467 rfbD; putative UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_2033 scrB; Sucrose-6-phosphate hydrolase (Sucrase) (Invertase) K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D APL_1021 alpha-glucosidase 2 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:apl00053]
D APL_1565 putative gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APL_1699 ulaC; Ascorbate-specific phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D APL_1700 ulaA; Predicted ascorbate-specific permease IIC component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APL_1715 sgaB; Phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APL_1714 ulaA; ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D APL_1701 ulaG; L-ascorbate-6-phosphate lactonase UlaG-like protein K03476 ulaG; L-ascorbate 6-phosphate lactonase [EC:3.1.1.-]
D APL_1698 ulaD; Probable 3-keto-L-gulonate-6-phosphate decarboxylase K03078 ulaD; 3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]
D APL_1703 Putative hexulose-6-phosphate isomerase (HUMPI) K03079 ulaE; L-ribulose-5-phosphate 3-epimerase [EC:5.1.3.22]
D APL_1704 Probable sugar isomerase K03077 araD; L-ribulose-5-phosphate 4-epimerase [EC:5.1.3.4]
D APL_1573 2,3-diketo-L-gulonate reductase K08092 dlgD; 3-dehydro-L-gulonate 2-dehydrogenase [EC:1.1.1.130]
D APL_1564 lyx; putative L-xylulose kinase K00880 lyxK; L-xylulokinase [EC:2.7.1.53]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:apl00500]
D APL_1319 ptsB; PTS system sucrose-specific EIIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D APL_2033 scrB; Sucrose-6-phosphate hydrolase (Sucrase) (Invertase) K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D APL_1021 alpha-glucosidase 2 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D APL_0651 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APL_0348 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D APL_0349 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D APL_0346 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D APL_1232 malP; maltodextrin phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D APL_0350 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D APL_0347 glgX; glycogen operon protein GlgX K02438 glgX; glycogen debranching enzyme [EC:3.2.1.196]
D APL_1240 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D APL_1324 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APL_1137 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APL_2034 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:apl00520]
D APL_1111 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D APL_1096 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D APL_1324 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APL_0416 hypothetical protein K00884 NAGK; N-acetylglucosamine kinase [EC:2.7.1.59]
D APL_1756 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D APL_1755 nagB; Glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D APL_2034 scrK; Fructokinase K00847 E2.7.1.4; fructokinase [EC:2.7.1.4]
D APL_1631 glmS; Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D APL_1454 mrsA; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D APL_0588 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D APL_1536 N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D APL_1535 anmK; anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
D APL_1286 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D APL_1851 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D APL_1753 nanK; putative N-acetylmannosamine kinase K00885 nanK; N-acylmannosamine kinase [EC:2.7.1.60]
D APL_1752 nanE; Putative N-acetylmannosamine-6-phosphate 2-epimerase K01788 nanE; N-acylglucosamine-6-phosphate 2-epimerase [EC:5.1.3.9]
D APL_1754 nanA; N-acetylneuraminate lyase K01639 E4.1.3.3; N-acetylneuraminate lyase [EC:4.1.3.3]
D APL_1552 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D APL_1551 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D APL_0651 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APL_0995 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D APL_0994 galT; galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D APL_1301 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D APL_1467 rfbD; putative UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D APL_1391 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1662 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1661 mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1392 ptnC; mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1393 ptnD; mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1660 mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1137 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APL_1395 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D APL_0591 pgm; phosphoglucomutase/phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APL_0652 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APL_0348 glgC; glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:apl00620]
D APL_0773 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APL_0772 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_1036 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APL_1959 adhI; Alcohol dehydrogenase 1 K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_0645 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D APL_0644 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APL_0187 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APL_1486 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D APL_1864 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D APL_1865 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D APL_0631 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D APL_0143 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APL_1849 lldD; L-lactate dehydrogenase (cytochrome) K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
D APL_0687 dld; D-lactate dehydrogenase K03777 dld; D-lactate dehydrogenase (quinone) [EC:1.1.5.12]
D APL_0181 gloA; lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D APL_0415 gloB; putative hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D APL_0123 glyoxalase II family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D APL_0486 maeB; NADP-dependent malic enzyme (NADP-ME) K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D APL_1376 oadA; oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D APL_1377 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D APL_1375 oadG; oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D APL_1296 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APL_1414 mqo; putative malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D APL_1757 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D APL_1529 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APL_1528 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APL_1527 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D APL_1526 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D APL_0339 pepC; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D APL_0800 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D APL_0393 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:apl00630]
D APL_1296 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APL_0988 hktE; catalase K03781 katE; catalase [EC:1.11.1.6]
D APL_2039 ldhA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D APL_1893 gph; Phosphoglycolate phosphatase (PGPase) K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D APL_1941 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APL_0211 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0142 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D APL_1689 probable alcohol dehydrogenase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
D APL_1018 eda; putative KHG/KDPG aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D APL_0893 fdxG; formate dehydrogenase, nitrate-inducible, major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APL_0892 fdxG; formate dehydrogenase, nitrate-inducible, major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APL_0894 fdxH; formate dehydrogenase, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D APL_0895 fdnI; formate dehydrogenase, cytochrome b556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
C 00640 Propanoate metabolism [PATH:apl00640]
D APL_0645 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D APL_0644 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_1036 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_1486 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D APL_1864 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D APL_1865 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D APL_0631 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D APL_0452 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D APL_0451 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D APL_1498 mgsA; methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3]
D APL_1689 probable alcohol dehydrogenase K00048 fucO; lactaldehyde reductase [EC:1.1.1.77]
C 00650 Butanoate metabolism [PATH:apl00650]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APL_1377 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D APL_1529 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APL_1528 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APL_1527 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D APL_1526 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D APL_1036 pflB; formate acetyltransferase K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D APL_0099 ilvG; Acetolactate synthase isozyme II large subunit (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0727 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0728 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APL_0098 ilvM; Acetolactate synthase isozyme II small subunit (AHAS-II) K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:apl00660]
D APL_0099 ilvG; Acetolactate synthase isozyme II large subunit (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0727 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0728 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APL_0098 ilvM; Acetolactate synthase isozyme II small subunit (AHAS-II) K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D APL_0452 sucC; succinyl-CoA synthetase beta chain K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D APL_0451 sucD; succinyl-CoA ligase [ADP-forming] subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D APL_0139 leuC; 3-isopropylmalate dehydratase large subunit 2 K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D APL_0138 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D APL_0432 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:apl00562]
D APL_0206 suhB; Inositol-1-monophosphatase (IMPase) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D APL_1925 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:apl00190]
D APL_1271 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D APL_1529 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APL_1528 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APL_1527 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D APL_1526 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D APL_0297 cydA; cytochrome oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D APL_0298 cydB; cytochrome oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D APL_1648 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D APL_1646 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D APL_1647 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D APL_1649 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D APL_1645 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D APL_1652 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D APL_1650 atpF; ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D APL_1651 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D APL_1899 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:apl00680]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_1204 esterase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12]
D APL_0893 fdxG; formate dehydrogenase, nitrate-inducible, major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APL_0892 fdxG; formate dehydrogenase, nitrate-inducible, major subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D APL_0894 fdxH; formate dehydrogenase, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D APL_0895 fdnI; formate dehydrogenase, cytochrome b556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D APL_0211 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APL_2039 ldhA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D APL_1113 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APL_0339 pepC; phosphoenolpyruvate carboxylase K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31]
D APL_1296 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APL_1250 fba; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D APL_1450 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APL_0624 glpX; fructose-1,6-bisphosphatase class II GlpX K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_1798 torA; Trimethylamine-N-oxide reductase precursor K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APL_1799 torC; pentahemic c-type cytochrome K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D APL_1797 torD; chaperone protein TorD K03533 torD; TorA specific chaperone
D APL_0689 torY; cytochrome c-type protein TorY K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D APL_0688 torZ; trimethylamine-N-oxide reductase precursor K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APL_0645 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D APL_0644 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APL_0832 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APL_1452 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APL_0702 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APL_1230 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:apl00910]
D APL_1429 napA; periplasmic nitrate reductase precursor K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D APL_1426 napB; nitrate reductase cytochrome c-type subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D APL_0100 nrfA; Cytochrome c-552 precursor K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D APL_2035 sufI; Copper-containing nitrite reductase precursor K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D APL_1546 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D APL_0427 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D APL_1941 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APL_1318 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D APL_0726 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:apl00920]
D APL_1845 sbp; sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D APL_1846 cysT; Sulfate transport system permease protein cysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D APL_1847 cysW; Sulfate transport system permease protein cysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D APL_1848 cysA; Sulfate/thiosulfate import ATP-binding protein cysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D APL_1844 cysN; sulphate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APL_1312 cysQ; CysQ-like protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D APL_1843 cysJ; Sulfite reductase [NADPH] flavoprotein alpha-component (SIR-FP) K00380 cysJ; sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
D APL_1842 cysI; Sulfite reductase [NADPH] hemoprotein beta-component (SIR-HP) (SIRHP) K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
D APL_0480 hypothetical protein K17218 sqr; sulfide:quinone oxidoreductase [EC:1.8.5.4]
D APL_0079 glpE; thiosulfate sulfurtransferase GlpE K02439 glpE; thiosulfate sulfurtransferase [EC:2.8.1.1]
D APL_1511 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D APL_0248 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D APL_0441 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D APL_0683 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D APL_1674 dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D APL_1675 dmsB; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D APL_1676 dmsC; anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:apl00061]
D APL_1486 accA; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D APL_1864 accB; Biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D APL_1865 accC; Biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D APL_0631 accD; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D APL_1819 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D APL_1993 fabD; Malonyl CoA-acyl carrier protein transacylase (MCT) K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D APL_1384 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D APL_1055 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D APL_1992 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APL_1889 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D APL_0408 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D APL_0755 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D APL_0789 dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D APL_1413 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_0397 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:apl00071]
D APL_0887 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_1413 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_0397 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APL_1959 adhI; Alcohol dehydrogenase 1 K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:apl00561]
D APL_0142 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APL_0083 dhaK; PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK K05878 dhaK; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaK [EC:2.7.1.121]
D APL_0082 dhaL; PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL K05879 dhaL; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaL [EC:2.7.1.121]
D APL_0081 dhaM; PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D APL_0375 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D APL_1107 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D APL_1385 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D APL_1341 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D APL_1488 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D APL_0768 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:apl00564]
D APL_1510 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D APL_0379 glpA; anaerobic glycerol-3-phosphate dehydrogenase subunit A K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D APL_0380 glpB; anaerobic glycerol-3-phosphate dehydrogenase subunit B K00112 glpB; glycerol-3-phosphate dehydrogenase subunit B [EC:1.1.5.3]
D APL_0381 glpC; anaerobic glycerol-3-phosphate dehydrogenase subunit C K00113 glpC; glycerol-3-phosphate dehydrogenase subunit C
D APL_1107 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D APL_1341 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D APL_1488 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D APL_0768 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D APL_0378 glpQ; glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D APL_0413 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D APL_0043 pssA; phosphatidylserine synthase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D APL_1407 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D APL_0275 pgsA; phosphatidylglycerophosphate synthase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D APL_0203 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D APL_0417 pgpB; phosphatidylglycerophosphatase B K01096 pgpB; phosphatidylglycerophosphatase B [EC:3.1.3.27 3.6.1.75 3.1.3.4 3.6.1.27]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism [PATH:apl00600]
D APL_0997 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D APL_1096 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism [PATH:apl00592]
D APL_0887 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01040 Biosynthesis of unsaturated fatty acids
D APL_0971 putative acyl CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:apl00230]
D APL_1943 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D APL_1313 putative ADP compounds hydrolase K08312 nudE; ADP compounds hydrolase [EC:3.6.1.-]
D APL_0775 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D APL_0425 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D APL_1172 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D APL_1106 purT; putative phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D APL_1682 purL; phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D APL_1095 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D APL_0661 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D APL_0659 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D APL_2018 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase) K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D APL_0824 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D APL_0958 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D APL_0266 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D APL_0769 ushA; UshA precursor K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D APL_1927 surE; 5'-nucleotidase surE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D APL_1014 deoD; purine nucleoside phosphorylase DeoD-like protein K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D APL_0431 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D APL_0682 hpt; yypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D APL_0593 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D APL_0351 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D APL_0464 HAM1-like protein K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D APL_0255 gpt; xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D APL_0592 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D APL_0256 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D APL_0992 nrdA; ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APL_0148 rnr1; ribonucleoside-diphosphate reductase large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APL_0993 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APL_0147 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APL_0163 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D APL_0313 deoxyguanosinetriphosphate triphosphohydrolase-like protein K01129 dgt; dGTPase [EC:3.1.5.1]
D APL_1825 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp)ase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D APL_0708 ppx; exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D APL_0405 relA; GTP pyrophosphokinase K00951 relA; GTP pyrophosphokinase [EC:2.7.6.5]
D APL_1054 cyaA; adenylate cyclase K05851 cyaA; adenylate cyclase, class 1 [EC:4.6.1.1]
D APL_1075 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D APL_0145 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D APL_1743 Ser/Thr protein phosphatase family protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APL_0646 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APL_1298 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D APL_0630 mazG; predicted pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APL_1942 icc; protein Icc-like protein K03651 cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]
D APL_0760 apaH; diadenosine tetraphosphatase K01525 apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [EC:3.6.1.41]
D APL_1844 cysN; sulphate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APL_0818 transthyretin-like periplasmic protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D APL_1616 ureC; urease alpha subunit UreC K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D APL_1617 ureB; urease subunit beta UreB K01429 ureB; urease subunit beta [EC:3.5.1.5]
D APL_1618 ureA; urease gamma subunit UreA K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D APL_1318 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:apl00240]
D APL_0774 pyrD; dihydroorotate dehydrogenase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D APL_0318 pryE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D APL_0736 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D APL_0569 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D APL_0351 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D APL_0630 mazG; predicted pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APL_1072 Maf-like protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D APL_0136 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D APL_0741 cmkA; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D APL_0834 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D APL_0769 ushA; UshA precursor K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D APL_1927 surE; 5'-nucleotidase surE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D APL_0132 putative haloacid dehalogenase-like hydrolase K08723 yjjG; pyrimidine 5'-nucleotidase [EC:3.1.3.-]
D APL_1839 udp; uridine phosphorylase K00757 udp; uridine phosphorylase [EC:2.4.2.3]
D APL_0398 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D APL_0401 pyrR; PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D APL_1743 Ser/Thr protein phosphatase family protein K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APL_0646 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor K01119 cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6]
D APL_0145 hypothetical protein K06966 ppnN; pyrimidine/purine-5'-nucleotide nucleosidase [EC:3.2.2.10 3.2.2.-]
D APL_1343 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D APL_0163 anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D APL_0835 dcd; deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D APL_0992 nrdA; ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APL_0148 rnr1; ribonucleoside-diphosphate reductase large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APL_0993 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APL_0147 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APL_1817 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D APL_1968 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D APL_0622 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D APL_0115 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D APL_0468 probable NADP-dependent dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:apl00250]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_0135 ansB; probable L-asparaginase periplasmic precursor K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APL_0660 ansB; probable L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APL_1837 asnA; aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D APL_1043 probable aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APL_1091 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D APL_0422 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D APL_1179 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D APL_1075 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D APL_0824 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D APL_0427 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D APL_0106 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D APL_1941 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APL_1631 glmS; Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D APL_0425 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:apl00260]
D APL_0710 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D APL_0250 thrA; bifunctional aspartokinase/homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D APL_0005 asd; Aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APL_0249 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D APL_1499 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APL_0269 thrCA; putative threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APL_0211 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APL_2039 ldhA; Glycerate dehydrogenase K00018 hprA; glycerate dehydrogenase [EC:1.1.1.29]
D APL_0142 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D APL_0832 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APL_1452 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APL_0702 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APL_1230 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D APL_0468 probable NADP-dependent dehydrogenase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0043 pssA; phosphatidylserine synthase K00998 pssA; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D APL_0857 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D APL_1455 ilvA; threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D APL_0470 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D APL_0469 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D APL_1974 argD; Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D APL_1975 ddc; L-2,4-diaminobutyrate decarboxylase K13745 ddc; L-2,4-diaminobutyrate decarboxylase [EC:4.1.1.86]
C 00270 Cysteine and methionine metabolism [PATH:apl00270]
D APL_1511 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D APL_0248 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D APL_0320 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D APL_0701 O-acetylhomoserine (thiol)-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D APL_1155 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D APL_1080 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D APL_1637 mtn; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D APL_0431 hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D APL_1202 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D APL_1216 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D APL_0710 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D APL_0250 thrA; bifunctional aspartokinase/homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D APL_0005 asd; Aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APL_0441 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D APL_0683 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D APL_0072 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APL_1408 gshA; glutathione biosynthesis bifunctional protein GshAB K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_1296 mdh; malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D APL_0857 sdaA; L-serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D APL_1452 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APL_0702 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:apl00280]
D APL_0072 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_0887 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D APL_1197 3-hydroxyacid dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:apl00290]
D APL_1455 ilvA; threonine dehydratase biosynthetic K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D APL_0139 leuC; 3-isopropylmalate dehydratase large subunit 2 K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D APL_0138 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D APL_0432 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D APL_0099 ilvG; Acetolactate synthase isozyme II large subunit (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0727 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0728 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APL_0098 ilvM; Acetolactate synthase isozyme II small subunit (AHAS-II) K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D APL_1853 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D APL_0097 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D APL_0072 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APL_1043 probable aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APL_0393 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:apl00300]
D APL_0710 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D APL_0250 thrA; bifunctional aspartokinase/homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D APL_0005 asd; Aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APL_0899 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D APL_0684 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D APL_1861 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D APL_0244 argD; acetylornithine aminotransferase (ACOAT) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D APL_1873 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D APL_1531 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D APL_1525 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D APL_0013 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D APL_0014 murF; UDP-MurNAc-pentapeptide synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:apl00310]
D APL_0454 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:apl00220]
D APL_1317 arcB; ornithine carbamoyltransferase, catabolic K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D APL_0422 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D APL_1179 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D APL_1616 ureC; urease alpha subunit UreC K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D APL_1617 ureB; urease subunit beta UreB K01429 ureB; urease subunit beta [EC:3.5.1.5]
D APL_1618 ureA; urease gamma subunit UreA K01430 ureA; urease subunit gamma [EC:3.5.1.5]
D APL_1941 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APL_0427 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D APL_1318 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_1043 probable aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APL_0698 argA; amino-acid acetyltransferase K14682 argAB; amino-acid N-acetyltransferase [EC:2.3.1.1]
D APL_0243 argB; acetylglutamate kinase (AGK) K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D APL_0242 argC; N-acetyl-gamma-glutamyl-phosphate reductase (AGPR) K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D APL_0244 argD; acetylornithine aminotransferase (ACOAT) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D APL_1085 argE; acetylornithine deacetylase K01438 argE; acetylornithine deacetylase [EC:3.5.1.16]
C 00330 Arginine and proline metabolism [PATH:apl00330]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APL_0160 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D APL_0106 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D APL_0884 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D APL_1951 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:apl00340]
D APL_2019 hisG; ATP phosphoribosyltransferase (ATP-PRTase) (ATP-PRT) K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D APL_2028 hisI; Histidine biosynthesis bifunctional protein hisIE K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D APL_2026 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D APL_2025 hisH; Imidazole glycerol phosphate synthase subunit hisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D APL_2027 hisF; Imidazole glycerol phosphate synthase subunit hisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D APL_2023 hisB; Histidine biosynthesis bifunctional protein hisB K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D APL_2021 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0700 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_2020 hisD; Histidinol dehydrogenase (HDH) K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00350 Tyrosine metabolism [PATH:apl00350]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_2021 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0700 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APL_1959 adhI; Alcohol dehydrogenase 1 K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APL_1349 hpaC; 4-hydroxyphenylacetic acid hydroxylase putative coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
C 00360 Phenylalanine metabolism [PATH:apl00360]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_2021 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0700 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:apl00380]
D APL_0454 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APL_0988 hktE; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:apl00400]
D APL_0185 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APL_0620 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APL_0193 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D APL_1862 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D APL_1139 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D APL_0194 aroK; shikimate kinase (SK) K00891 aroK; shikimate kinase [EC:2.7.1.71]
D APL_0699 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D APL_0748 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D APL_1163 trpE; anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D APL_1164 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D APL_1165 trpD; anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D APL_0859 trpCF; tryptophan biosynthesis protein trpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D APL_0470 trpA; tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D APL_0469 trpB; tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D APL_0184 tyrA; T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D APL_1033 pheA; P-protein K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_2021 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0700 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:apl00410]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00430 Taurine and hypotaurine metabolism [PATH:apl00430]
D APL_0644 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D APL_0645 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:apl00450]
D APL_0683 metB; cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D APL_0320 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D APL_0701 O-acetylhomoserine (thiol)-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D APL_1155 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D APL_0084 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D APL_1844 cysN; sulphate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APL_0327 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D APL_1562 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D APL_0352 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:apl00460]
D APL_0135 ansB; probable L-asparaginase periplasmic precursor K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APL_0660 ansB; probable L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D APL_1837 asnA; aspartate-ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D APL_0211 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:apl00470]
D APL_0252 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D APL_0020 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APL_1841 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D APL_0016 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D APL_1531 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D APL_1525 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:apl00480]
D APL_1408 gshA; glutathione biosynthesis bifunctional protein GshAB K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2]
D APL_1101 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D APL_0388 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D APL_1340 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D APL_0254 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D APL_1524 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D APL_1243 gor; glutathione reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7]
D APL_1305 gnd; 6-phosphogluconate dehydrogenase, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D APL_1311 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D APL_1482 hybrid peroxiredoxin HyPrx5 K24136 pgdX; glutathione-dependent peroxiredoxin [EC:1.11.1.27]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation [PATH:apl00511]
D APL_0997 lacZ; beta-galactosidase K01190 lacZ; beta-galactosidase [EC:3.2.1.23]
D APL_1096 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
C 00540 Lipopolysaccharide biosynthesis [PATH:apl00540]
D APL_0407 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D APL_0024 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D APL_0409 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D APL_1808 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D APL_0007 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D APL_1278 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D APL_0387 kpsF; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D APL_1576 kpsF; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D APL_1578 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D APL_2040 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D APL_0051 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D APL_0085 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D APL_1577 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D APL_1132 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D APL_0900 lpxL; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D APL_0172 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D APL_0904 kdkA; 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D APL_0798 lpcA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D APL_0402 hldE; bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D APL_0845 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D APL_1710 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D APL_1402 rfaC; lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D APL_1403 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D APL_1131 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis [PATH:apl00542]
D APL_1554 wecA; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:apl00541]
D APL_0651 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D APL_1301 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D APL_1467 rfbD; putative UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D APL_1472 rfbB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D APL_1549 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
D APL_1550 wecD; putative TDP-D-fucosamine acetyltransferase K16704 rffC; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]
D APL_1395 manA; mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D APL_0591 pgm; phosphoglucomutase/phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APL_0652 manB; phosphomannomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D APL_0588 glmU; bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D APL_1552 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D APL_1551 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:apl00550]
D APL_1286 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D APL_1851 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D APL_0019 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D APL_0016 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D APL_0013 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D APL_0020 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APL_0014 murF; UDP-MurNAc-pentapeptide synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D APL_0414 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D APL_0015 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D APL_0018 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D APL_0476 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D APL_0195 mrcA; membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APL_1823 pbpB; Penicillin-binding protein 1B (PBP1b) K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D APL_1599 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D APL_0012 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D APL_1596 dacA; D-alanyl-D-alanine carboxypeptidase fraction A K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D APL_0945 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
C 00552 Teichoic acid biosynthesis [PATH:apl00552]
D APL_1554 wecA; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:apl00543]
D APL_1554 wecA; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D APL_1543 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D APL_1545 wecF; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D APL_1923 pgaC; biofilm PGA synthesis N-glycosyltransferase PgaC K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
D APL_1511 cysE; serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:apl00730]
D APL_0539 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D APL_0533 thiF; predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D APL_0931 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APL_1074 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D APL_0536 thiH; thiazole biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D APL_0207 dxs; 1-deoxy-D-xylulose-5-phosphate synthase (DXPS) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D APL_0535 thiG; thiazole biosynthesis protein ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D APL_0540 thiE; thiamine monophosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D APL_0202 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D APL_0130 engC; putative GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D APL_1298 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D APL_0537 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:apl00740]
D APL_0384 ribA; riboflavin biosynthesis protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D APL_0382 ribD; riboflavin biosynthesis protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D APL_0385 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D APL_0383 ribE; riboflavin synthase alpha chain K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D APL_0045 ribF; riboflavin biosynthesis protein K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D APL_1349 hpaC; 4-hydroxyphenylacetic acid hydroxylase putative coupling protein K00484 hpaC; flavin reductase (NADH) [EC:1.5.1.36]
D APL_1943 ADP-ribose pyrophosphatase K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D APL_0328 mutT; putative NTP pyrophosphohydrolase (MutT/Nudix family) K12152 nudJ; phosphatase NudJ [EC:3.6.1.-]
D APL_0732 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:apl00750]
D APL_2009 pdxH; Pyridoxamine 5'-phosphate oxidase (PNP/PMP oxidase) (PNPOx) K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
D APL_1485 pdxY; pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D APL_0702 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APL_1499 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APL_0269 thrCA; putative threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D APL_0572 pdxS; pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D APL_0573 pdxT; glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:apl00760]
D APL_1014 deoD; purine nucleoside phosphorylase DeoD-like protein K03784 deoD; purine-nucleoside phosphorylase [EC:2.4.2.1]
D APL_0046 nadR; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D APL_0769 ushA; UshA precursor K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D APL_1927 surE; 5'-nucleotidase surE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D APL_0630 mazG; predicted pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APL_0087 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D APL_0212 pnnK; probable inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D APL_0842 pntA; NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1]
D APL_0841 pntB; NAD(P) transhydrogenase subunit beta K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1]
C 00770 Pantothenate and CoA biosynthesis [PATH:apl00770]
D APL_0099 ilvG; Acetolactate synthase isozyme II large subunit (AHAS-II) K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0727 ilvI; acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D APL_0728 ilvH; acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D APL_0098 ilvM; Acetolactate synthase isozyme II small subunit (AHAS-II) K11258 ilvM; acetolactate synthase II small subunit [EC:2.2.1.6]
D APL_1853 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D APL_0097 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D APL_1513 coaA; pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D APL_1969 dfp; Coenzyme A biosynthesis bifunctional protein coaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D APL_0630 mazG; predicted pyrophosphatase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9]
D APL_1133 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D APL_0876 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D APL_1945 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D APL_1203 hypothetical protein K08682 acpH; acyl carrier protein phosphodiesterase [EC:3.1.4.14]
D APL_0072 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:apl00780]
D APL_0939 bioC; biotin synthesis protein K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D APL_1055 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D APL_1992 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APL_0408 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D APL_0755 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D APL_0940 hypothetical protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D APL_0941 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D APL_0942 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D APL_0938 bioD2; dethiobiotin synthetase 2 K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D APL_0614 bioD1; dethiobiotin synthetase 1 K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D APL_0117 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D APL_1850 birA; Bifunctional protein birA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:apl00785]
D APL_1594 lipB; lipoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D APL_1593 lipA; lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_0773 aceE; pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D APL_0772 aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D APL_0455 sucA; 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
D APL_0454 sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61]
C 00790 Folate biosynthesis [PATH:apl00790]
D APL_0903 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D APL_1150 ntpA; dATP pyrophosphohydrolase K08310 nudB; dihydroneopterin triphosphate diphosphatase [EC:3.6.1.67]
D APL_1342 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D APL_0177 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D APL_1876 folP; Dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D APL_0883 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D APL_0632 folC; folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D APL_0384 ribA; riboflavin biosynthesis protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D APL_1147 trpG; putative anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D APL_1145 pabB; para-aminobenzoate synthase component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D APL_1144 hypothetical protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D APL_1098 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D APL_1099 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D APL_1097 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D APL_0844 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D APL_0690 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D APL_0691 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D APL_0693 moaE; molybdopterin-converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D APL_1517 mog; molybdopterin biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D APL_0310 moeA; molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D APL_1866 mobAB; MobAB fusion protein K13818 mobAB; molybdopterin-guanine dinucleotide biosynthesis protein [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:apl00670]
D APL_0883 folA; dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D APL_0466 fhs; formyltetrahydrofolate synthetase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D APL_0897 folD; bifunctional protein FolD K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D APL_0211 glyA; glycine/serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D APL_0958 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D APL_1587 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D APL_0115 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D APL_0854 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D APL_0109 hypothetical protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:apl00860]
D APL_1275 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APL_0404 hemA; glutamyl-tRNA reductase (GluTR) K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D APL_1555 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D APL_1988 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D APL_1010 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D APL_1009 hemD; putative uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D APL_0112 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D APL_0963 hemN; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D APL_1591 hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D APL_1937 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D APL_1008 hemX; putative uroporphyrin-III C-methyltransferase K02496 hemX; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D APL_1048 hugZ; heme utilization protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:apl00130]
D APL_1840 ubiC; 4-hydroxybenzoate synthetase (chorismate lyase) K03181 ubiC; chorismate lyase [EC:4.1.3.40]
D APL_0822 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D APL_1439 ubiD; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D APL_0732 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D APL_0333 visC; putative monooxygenase family protein K18800 ubiI; 2-polyprenylphenol 6-hydroxylase [EC:1.14.13.240]
D APL_0285 ubiG; 3-demethylubiquinone-9 3-methyltransferase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]
D APL_0329 2-octaprenyl-6-methoxyphenol hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
D APL_1982 ubiE; Ubiquinone/menaquinone biosynthesis methyltransferase ubiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D APL_1744 ubiF; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase K03184 ubiF; 3-demethoxyubiquinol 3-hydroxylase [EC:1.14.99.60]
D APL_1042 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
D APL_1750 menD; Menaquinone biosynthesis protein menD K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D APL_1749 Putative acyl-CoA thioester hydrolase K08680 menH; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]
D APL_0353 menC; O-succinylbenzoate synthase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D APL_0751 menE; 2-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D APL_1824 menB; naphthoate synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D APL_1423 hypothetical protein K19222 menI; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28]
D APL_1461 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:apl00900]
D APL_0207 dxs; 1-deoxy-D-xylulose-5-phosphate synthase (DXPS) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D APL_0406 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D APL_0802 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D APL_0776 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D APL_0803 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D APL_1176 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D APL_1520 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D APL_0732 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D APL_0807 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D APL_1995 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D APL_0414 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation [PATH:apl00907]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_0887 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D APL_0983 tktA; transketolase 2 K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
D APL_1472 rfbB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D APL_1042 menF; menaquinone-specific isochorismate synthase K02552 menF; menaquinone-specific isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D APL_1472 rfbB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:apl00332]
D APL_0884 proB; glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D APL_1951 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:apl00261]
D APL_1844 cysN; sulphate adenylate transferase subunit 1 K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D APL_0710 lysC; lysine-sensitive aspartokinase 3 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D APL_0250 thrA; bifunctional aspartokinase/homoserine dehydrogenase K12524 thrA; bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]
D APL_0005 asd; Aspartate-semialdehyde dehydrogenase Asd K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D APL_0899 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D APL_0684 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:apl00521]
D APL_0206 suhB; Inositol-1-monophosphatase (IMPase) K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D APL_1472 rfbB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
D APL_1472 rfbB1; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:apl00401]
D APL_0184 tyrA; T-protein K14187 tyrA; chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_2021 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0700 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D APL_1163 trpE; anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D APL_1164 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D APL_1993 fabD; Malonyl CoA-acyl carrier protein transacylase (MCT) K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D APL_1992 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APL_0755 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D APL_1819 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:apl00999]
D APL_1080 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D APL_1139 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:apl00362]
D APL_0887 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
D APL_1377 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
C 00627 Aminobenzoate degradation [PATH:apl00627]
D APL_0143 putative acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D APL_0732 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:apl00625]
D APL_1959 adhI; Alcohol dehydrogenase 1 K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D APL_2011 aldA; Putative aldehyde dehydrogenase aldA K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
D APL_1334 hyaB; hydrogenase-2 large chain precursor K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D APL_1331 hyaA; hydrogenase-2 small chain precursor K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
C 00642 Ethylbenzene degradation
D APL_0887 fadI; 3-ketoacyl-CoA thiolase K00632 fadA; acetyl-CoA acyltransferase [EC:2.3.1.16]
C 00643 Styrene degradation
C 00791 Atrazine degradation
D APL_1616 ureC; urease alpha subunit UreC K01428 ureC; urease subunit alpha [EC:3.5.1.5]
D APL_1617 ureB; urease subunit beta UreB K01429 ureB; urease subunit beta [EC:3.5.1.5]
D APL_1618 ureA; urease gamma subunit UreA K01430 ureA; urease subunit gamma [EC:3.5.1.5]
C 00930 Caprolactam degradation [PATH:apl00930]
D APL_1565 putative gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APL_0888 fadJ; putative fatty acid oxidation complex alpha subunit K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:apl00626]
D APL_1959 adhI; Alcohol dehydrogenase 1 K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D APL_1208 adhC; putative alcohol dehydrogenase class 3 K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1]
D APL_1011 adh2; aldehyde-alcohol dehydrogenase 2 K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:apl03020]
D APL_1727 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D APL_1728 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D APL_1784 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D APL_1826 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:apl03010]
D APL_0740 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D APL_0566 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D APL_1766 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D APL_1783 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D APL_1776 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D APL_1171 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D APL_1400 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D APL_1773 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D APL_0601 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D APL_1759 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D APL_1782 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D APL_1401 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D APL_1781 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D APL_1772 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D APL_1005 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D APL_1786 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D APL_1769 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D APL_1764 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D APL_1558 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D APL_1473 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D APL_1719 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D APL_1763 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D APL_1760 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D APL_1761 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D APL_1771 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D APL_1774 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D APL_1721 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D APL_1169 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D APL_1720 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D APL_1718 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D APL_0600 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D APL_1778 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D APL_1767 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D APL_1785 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D APL_1775 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D APL_1789 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D APL_0225 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D APL_1999 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D APL_1765 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D APL_1762 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D APL_1770 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D APL_0487 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D APL_2000 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D APL_1971 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D APL_1768 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D APL_1777 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D APL_1821 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D APL_0982 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D APL_1386 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D APL_1972 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D APL_1938 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D APL_0224 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D APL_1780 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APL_1822 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APL_2111 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2113 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2109 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2110 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2114 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2112 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2118 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2119 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2117 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2120 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2115 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2122 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2123 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2126 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2125 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2124 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:apl00970]
D APL_2057 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2083 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2105 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2072 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2085 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2086 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2051 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APL_2061 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APL_2063 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APL_2076 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APL_2094 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APL_2093 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APL_2107 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D APL_2101 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APL_2103 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APL_2102 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APL_2050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APL_2075 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APL_2064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APL_2080 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2087 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2089 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2092 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2106 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2073 tRNA-His K14226 tRNA-His; tRNA His
D APL_2047 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APL_2070 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APL_2082 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APL_2100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2108 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2056 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2088 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2091 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2067 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APL_2069 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APL_2068 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APL_2052 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2099 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2053 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2055 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2060 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APL_2062 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APL_2074 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APL_2104 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APL_2084 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2065 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2066 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2049 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2081 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APL_2058 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APL_2078 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APL_2077 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D APL_2079 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D APL_2095 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2096 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2098 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2097 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2054 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2059 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D APL_1275 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APL_0679 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D APL_0654 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D APL_1149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APL_0675 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D APL_1800 sygA; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D APL_1803 sygB; Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D APL_0219 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D APL_0868 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D APL_1562 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D APL_0913 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D APL_0352 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D APL_1587 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D APL_1502 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D APL_0872 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APL_0044 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D APL_0809 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D APL_0039 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APL_1830 syp; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D APL_1175 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D APL_0608 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D APL_0609 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D APL_1476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APL_1892 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:apl03060]
D APL_1779 secY; Preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY
D APL_1716 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D APL_0743 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG
D APL_1067 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D APL_1068 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D APL_1066 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D APL_1424 oxaA; inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APL_0239 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APL_1509 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D APL_1742 srp54; signal recognition particle protein (sigma-54 like protein) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D APL_1346 ftsY; cell division protein FtsY-like protein K03110 ftsY; fused signal recognition particle receptor
D APL_1985 tatA; twin argininte translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D APL_1986 tatB; sec-independent protein translocase-like protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D APL_1987 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
D APL_0542 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D APL_1519 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:apl04122]
D APL_0931 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APL_0092 sirA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D APL_1644 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D APL_1643 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D APL_1642 tusD; sulfurtransferase TusD-like protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D APL_0273 putative dissimilatory sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D APL_0158 trmU; putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D APL_0693 moaE; molybdopterin-converting factor subunit 2 K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D APL_0690 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D APL_0692 moaD; molybdopterin-converting factor subunit 1 K03636 moaD; sulfur-carrier protein
D APL_2045 sseA; Probable thiosulfate sulfurtransferase K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11]
D APL_0311 moeB; molybdopterin biosynthesis protein MoeB K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D APL_0691 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D APL_1517 mog; molybdopterin biosynthesis protein K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D APL_1074 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D APL_0534 thiS; thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein
D APL_0533 thiF; predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:apl03018]
D APL_1897 nudH; Probable (di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D APL_1436 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D APL_0560 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D APL_1113 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APL_0577 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D APL_1478 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D APL_0575 deaD; cold-shock DEAD box protein A-like protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D APL_1116 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D APL_0247 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_1906 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D APL_1012 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APL_1961 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D APL_0176 pcnB; putative poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:apl03030]
D APL_1282 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APL_1105 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APL_0265 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APL_1816 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APL_0874 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APL_2006 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APL_1505 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APL_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APL_0713 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D APL_1474 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D APL_0783 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D APL_0423 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D APL_0129 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D APL_0473 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APL_1302 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:apl03410]
D APL_0886 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D APL_0362 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D APL_1739 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D APL_1990 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D APL_1931 tagI; 3-methyladenine-DNA glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D APL_0977 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D APL_0358 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D APL_0473 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APL_0459 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APL_1302 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:apl03420]
D APL_1339 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D APL_0782 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D APL_0667 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D APL_0277 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D APL_1326 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D APL_0473 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APL_1302 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:apl03430]
D APL_1602 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D APL_1958 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D APL_1109 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D APL_1326 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D APL_0673 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D APL_0817 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D APL_0806 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D APL_0459 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APL_0783 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D APL_1105 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APL_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APL_0265 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APL_0874 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APL_1816 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APL_1282 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APL_1505 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APL_2006 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APL_1302 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D APL_0192 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_0495 putative DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:apl03440]
D APL_0459 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APL_0783 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D APL_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D APL_0545 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D APL_0074 recR; recombination protein RecR K06187 recR; recombination protein RecR
D APL_1143 recA; recombinase A K03553 recA; recombination protein RecA
D APL_0473 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APL_0283 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D APL_0284 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D APL_1153 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D APL_1827 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D APL_0370 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D APL_1884 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D APL_0253 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D APL_1105 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APL_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APL_0265 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APL_0874 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APL_1816 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APL_1282 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APL_1505 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APL_2006 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APL_1032 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D APL_1170 priB; primosomal replication protein n K02686 priB; primosomal replication protein N
D APL_0650 hypothetical protein K04067 priC; primosomal replication protein N''
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:apl02010]
D APL_1845 sbp; sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D APL_1846 cysT; Sulfate transport system permease protein cysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D APL_1847 cysW; Sulfate transport system permease protein cysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D APL_1848 cysA; Sulfate/thiosulfate import ATP-binding protein cysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D APL_0538 putative ABC transporter substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D APL_0531 putative ABC transporter permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D APL_0262 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D APL_0261 modB; molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D APL_0260 modC; molybdenum import ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D APL_1586 modF; putative molybdenum transport ATP-binding protein K05776 modF; molybdate transport system ATP-binding protein
D APL_1446 afuA; ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D APL_0563 afuA_2; Fe3+ ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D APL_1447 afuB; Ferric transport system permease protein fbpB K02011 afuB; iron(III) transport system permease protein
D APL_0564 afuB_2; Ferric transport system permease protein K02011 afuB; iron(III) transport system permease protein
D APL_1448 afuC; ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D APL_0174 tbpA; thiamine-binding periplasmic protein precursor K02064 thiB; thiamine transport system substrate-binding protein
D APL_1321 thiP; thiamine transport system permease protein ThiP K02063 thiP; thiamine transport system permease protein
D APL_1320 thiQ; thiamine transport ATP-binding protein ThiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D APL_0368 potD2; spermidine/putrescine-binding periplasmic protein 1 precursor K11069 potD; spermidine/putrescine transport system substrate-binding protein
D APL_0282 potC; spermidine/putrescine transport system permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein
D APL_0281 potB; spermidine/putrescine transport system permease protein potB K11071 potB; spermidine/putrescine transport system permease protein
D APL_0280 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D APL_1237 malE; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D APL_1238 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D APL_1239 malG; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D APL_1236 malK; maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D APL_1289 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D APL_1290 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D APL_1291 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D APL_1288 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D APL_1292 predicted ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D APL_1672 rbsB; D-ribose-binding periplasmic protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D APL_1671 rbsC; ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D APL_1670 rbsA; ribose transport ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D APL_1669 rbsD; high affinity ribose transport protein RbsD K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D APL_1420 mglB; D-galactose-binding periplasmic protein precursor K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APL_0450 mglB; D-galactose-binding periplasmic protein precursor K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APL_1418 mglC; galactoside transport system permease protein MglC K10541 mglC; methyl-galactoside transport system permease protein
D APL_1419 mglA; galactoside transport ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D APL_1909 xylF; D-xylose-binding periplasmic protein precursor K10543 xylF; D-xylose transport system substrate-binding protein
D APL_1911 xylH; Xylose transport system permease protein xylH K10544 xylH; D-xylose transport system permease protein
D APL_1910 xylG; D-xylose transport ATP-binding protein xylG K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D APL_1261 pstS; phosphate-binding periplasmic protein precursor K02040 pstS; phosphate transport system substrate-binding protein
D APL_1260 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D APL_1259 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D APL_1258 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D APL_1353 artI; arginine-binding periplasmic protein precursor K09997 artI; arginine transport system substrate-binding protein
D APL_1351 artM; arginine transport system permease protein ArtM K09998 artM; arginine transport system permease protein
D APL_1352 artQ; arginine transport system permease protein ArtQ K09999 artQ; arginine transport system permease protein
D APL_1354 artP; arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D APL_1657 putative amino-acid ABC transporter-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D APL_1604 hypothetical amino-acid ABC transporter permease protein K10009 tcyB; L-cystine transport system permease protein
D APL_1603 putative amino-acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D APL_0909 plpB; outer membrane lipoprotein 2 precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APL_0910 plpA; outer membrane lipoprotein 1 precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APL_0911 metI; D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D APL_0912 metN; D-methionine transport ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D APL_0064 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APL_2010 hbpA; Heme-binding protein A K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0063 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0855 hbpA; heme-binding protein A precursor K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0065 dppB; dipeptide transport system permease protein DppB K12369 dppB; dipeptide transport system permease protein
D APL_0066 dppC; dipeptide transport system permease protein DppC K12370 dppC; dipeptide transport system permease protein
D APL_0067 dppD; dipeptide transport ATP-binding protein DppD K12371 dppD; dipeptide transport system ATP-binding protein
D APL_0068 dppF; dipeptide transport ATP-binding protein DppF K12372 dppF; dipeptide transport system ATP-binding protein
D APL_0796 sapA; peptide transport periplasmic protein SapA precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D APL_0795 sapB; peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D APL_0794 sapC; peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D APL_0793 sapD; peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D APL_1249 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D APL_2014 ABC-type Fe3+-hydroxamate transport system; FhuD K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D APL_2015 fhuB; Ferrichrome uptake protein fhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D APL_2013 fhuC; Ferrichrome transport ATP-binding protein fhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D APL_1440 znuA; high-affinity zinc uptake system protein ZnuA precursor K09815 znuA; zinc transport system substrate-binding protein
D APL_0439 znuB; high-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D APL_0456 znuC; high-affinity zinc uptake system ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D APL_0272 yfeA; iron (chelated) ABC transporter, periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D APL_0128 yfeC; putative iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D APL_0127 yfeD; putative iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D APL_0271 putative chelated iron transport system ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D APL_1622 cbiM; predicted ABC transport permease protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D APL_1621 cbiQ; putative ABC transport permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D APL_1620 cbiO; predicted ABC transport ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D APL_1624 cbiK; putative periplasmic binding protein CbiK K10094 cbiK; nickel transport protein
D APL_1623 cbiL; putative cytoplasmic membrane protein CbiL K16915 cbiL; nickel transport protein
D APL_1583 cpxC; capsule polysaccharide export inner-membrane protein K10107 kpsE; capsular polysaccharide transport system permease protein
D APL_1584 cpxB; capsule polysaccharide export inner-membrane protein K09688 kpsM; capsular polysaccharide transport system permease protein
D APL_1585 cpxA; ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D APL_1463 putative ABC-transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D APL_1464 wzm; ABC transporter integral membrane subunit K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D APL_2038 lolC; Lipoprotein-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein
D APL_2036 lolE; lipoprotein-releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D APL_2037 lolD; Lipoprotein-releasing system ATP-binding protein lolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D APL_1369 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D
D APL_1370 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D APL_1371 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D APL_1372 ccmA; cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D APL_1103 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein
D APL_1104 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein
D APL_0336 yhgB; putative ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D APL_1344 fstX; cell division protein FtsX-like protein K09811 ftsX; cell division transport system permease protein
D APL_1345 fstE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D APL_0778 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D APL_1443 apxIB; toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APL_1215 hypothetical ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D APL_0826 cydC; transport ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D APL_0827 cydD; transport ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D APL_0626 macB; putative macrolide-specific ABC-type efflux carrier K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
C 02060 Phosphotransferase system (PTS) [PATH:apl02060]
D APL_1323 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D APL_1322 ptsH; PTS system phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D APL_1324 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APL_1319 ptsB; PTS system sucrose-specific EIIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D APL_1630 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D APL_1391 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1662 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1661 mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1392 ptnC; mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1393 ptnD; mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1660 mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1699 ulaC; Ascorbate-specific phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D APL_1700 ulaA; Predicted ascorbate-specific permease IIC component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APL_1715 sgaB; Phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APL_1714 ulaA; ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D APL_0345 fruB; multiphosphoryl transfer protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D APL_0343 fruA; PTS system fructose-specific EIIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D APL_0344 fruK; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D APL_0335 ptsN; PTS system, nitrogen regulatory IIA-like protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:apl03070]
D APL_1442 apxID; RTX-I toxin secretion component K11003 hlyD; membrane fusion protein, hemolysin D
D APL_1443 apxIB; toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APL_1067 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D APL_1068 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D APL_1716 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D APL_0743 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG
D APL_1779 secY; Preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY
D APL_1066 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D APL_1424 oxaA; inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APL_0239 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APL_1346 ftsY; cell division protein FtsY-like protein K03110 ftsY; fused signal recognition particle receptor
D APL_1509 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D APL_1742 srp54; signal recognition particle protein (sigma-54 like protein) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D APL_1985 tatA; twin argininte translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D APL_1986 tatB; sec-independent protein translocase-like protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D APL_1987 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:apl02020]
D APL_1256 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D APL_1257 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D APL_1261 pstS; phosphate-binding periplasmic protein precursor K02040 pstS; phosphate transport system substrate-binding protein
D APL_0627 two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APL_0629 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D APL_1293 htrA; probable periplasmic serine protease do/hhoA-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D APL_1064 qseC; sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APL_1063 qseB; transcriptional regulatory protein QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D APL_1799 torC; pentahemic c-type cytochrome K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D APL_1798 torA; Trimethylamine-N-oxide reductase precursor K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APL_1797 torD; chaperone protein TorD K03533 torD; TorA specific chaperone
D APL_0935 aerobic respiration control sensor protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D APL_0048 arcA; aerobic respiration control protein ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D APL_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D APL_1532 dcuB; anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APL_1316 dcuB2; anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APL_0462 narQ; sensor protein NarQ-like protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D APL_0059 narP; nitrate/nitrite response regulator protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
D APL_1529 frdA; fumarate reductase flavoprotein subunit K00244 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D APL_1528 frdB; fumarate reductase iron-sulfur protein K00245 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D APL_1527 frdC; fumarate reductase subunit C K00246 frdC; succinate dehydrogenase subunit C
D APL_1526 frdD; fumarate reductase subunit D K00247 frdD; succinate dehydrogenase subunit D
D APL_0653 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D APL_0558 flp2; minor fimbrial protein K02651 flp; pilus assembly protein Flp/PilA
D APL_0559 flp1; fimbrial protein Flp precursor K02651 flp; pilus assembly protein Flp/PilA
D APL_0556 rcpC; flp operon protein C K02279 cpaB; pilus assembly protein CpaB
D APL_0555 rcpA; rough colony protein A K02280 cpaC; pilus assembly protein CpaC
D APL_0553 tadZ; flp operon protein D K02282 cpaE; pilus assembly protein CpaE
D APL_0552 tadA; tight adherence protein A K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D APL_0551 tadB; tight adherence protein B K12510 tadB; tight adherence protein B
D APL_0550 tadC; tight adherence protein C K12511 tadC; tight adherence protein C
D APL_0598 glnD; uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D APL_1518 glnB; nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D APL_1941 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APL_1331 hyaA; hydrogenase-2 small chain precursor K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D APL_1334 hyaB; hydrogenase-2 large chain precursor K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D APL_1965 crp; Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein) K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D APL_0297 cydA; cytochrome oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D APL_0298 cydB; cytochrome oxidase subunit 2 K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D APL_1582 cpxD; capsule polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D APL_1552 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D APL_1551 wecC; UDP-N-acetyl-D-mannosamine dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:apl02024]
D APL_1216 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D APL_1961 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D APL_1163 trpE; anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D APL_1164 trpG; anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D APL_0185 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APL_0620 aroG; phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D APL_1064 qseC; sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APL_1063 qseB; transcriptional regulatory protein QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D APL_1413 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_0397 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_1965 crp; Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein) K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D APL_0382 ribD; riboflavin biosynthesis protein K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D APL_0927 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D APL_0029 ABC transporter periplasmic protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APL_1001 putative binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APL_0848 putative ABC transporter periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APL_0849 inner membrane ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APL_0028 ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APL_0027 nickel transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D APL_0850 ABC transporter, ATP-binding/permease K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APL_0026 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APL_0851 ABC transporter, ATP-binding subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D APL_1424 oxaA; inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APL_1716 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D APL_0743 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG
D APL_1779 secY; Preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY
D APL_1066 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D APL_0239 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APL_1346 ftsY; cell division protein FtsY-like protein K03110 ftsY; fused signal recognition particle receptor
D APL_1509 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D APL_1742 srp54; signal recognition particle protein (sigma-54 like protein) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:apl02030]
D APL_1237 malE; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D APL_1672 rbsB; D-ribose-binding periplasmic protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D APL_1420 mglB; D-galactose-binding periplasmic protein precursor K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APL_0450 mglB; D-galactose-binding periplasmic protein precursor K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APL_0064 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APL_2010 hbpA; Heme-binding protein A K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0063 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0855 hbpA; heme-binding protein A precursor K12368 dppA; dipeptide transport system substrate-binding protein
C 02040 Flagellar assembly [PATH:apl02040]
D APL_1657 putative amino-acid ABC transporter-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D APL_1475 rpoD; RNA polymerase sigma factor 70 K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D APL_1113 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:apl01501]
D APL_1300 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D APL_1111 nagZ; beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D APL_0585 hypothetical protein K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D APL_0586 putative RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APL_0587 acrB; acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APL_0195 mrcA; membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APL_1599 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D APL_0012 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:apl01502]
D APL_0020 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APL_0252 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D APL_0014 murF; UDP-MurNAc-pentapeptide synthetase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D APL_0015 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D APL_0018 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:apl01503]
D APL_0796 sapA; peptide transport periplasmic protein SapA precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D APL_0795 sapB; peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D APL_0794 sapC; peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D APL_0793 sapD; peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D APL_1249 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D APL_0627 two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APL_0629 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D APL_1136 amiB; putative N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D APL_1293 htrA; probable periplasmic serine protease do/hhoA-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D APL_1868 dsbA; Thiol:disulfide interchange protein dsbA precursor K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APL_1638 dsbA_2; thiol disulfide oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APL_0586 putative RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APL_0587 acrB; acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APL_0407 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:apl01000]
C 01001 Protein kinases [BR:apl01001]
D APL_1680 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APL_1723 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APL_1256 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D APL_0627 two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APL_1064 qseC; sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APL_0935 aerobic respiration control sensor protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D APL_0462 narQ; sensor protein NarQ-like protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:apl01009]
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_0987 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D APL_1230 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:apl01002]
D APL_1519 lspA; lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D APL_0877 apfD; fimbrial leader peptidase K02506 hofD; leader peptidase HopD [EC:3.4.23.43]
D APL_0557 tadV; flp operon protein B K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D APL_1335 hyaD; hydrogenase 2 maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D APL_0592 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D APL_0359 nlpC; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D APL_0611 putative lipoprotein K13695 nlpC; probable lipoprotein NlpC
D APL_0425 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D APL_1631 glmS; Glucosamine--fructose-6-phosphate aminotransferase (isomerizing) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D APL_0121 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D APL_1340 pepN; aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D APL_1034 prlC; oligopeptidase A K01414 prlC; oligopeptidase A [EC:3.4.24.70]
D APL_1913 pepO; neutral endopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D APL_1883 ptrA; protease 3 precursor K01407 ptrA; protease III [EC:3.4.24.55]
D APL_1154 putative zinc protease K07263 pqqL; zinc protease [EC:3.4.24.-]
D APL_1101 pepA; putative cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D APL_0388 pepB; peptidase B K07751 pepB; PepB aminopeptidase [EC:3.4.11.23]
D APL_1873 dapE; succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D APL_0254 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D APL_0869 abgB; aminobenzoyl-glutamate utilization-like protein K12940 abgA; aminobenzoyl-glutamate utilization protein A
D APL_0457 hypothetical metalloprotease K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D APL_2030 map; Methionine aminopeptidase (MAP) (Peptidase M) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D APL_0091 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9]
D APL_0663 pepP; Xaa-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D APL_0595 ftsH; cell division protease FtsH-like protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D APL_1039 htpX; putative protease HtpX-like protein K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D APL_0412 ecfE; putative zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D APL_0747 mepA; penicillin-insensitive murein endopeptidase precursor K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D APL_1293 htrA; probable periplasmic serine protease do/hhoA-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D APL_0742 degS; protease DegS precursor K04691 hhoB; serine protease DegS [EC:3.4.21.-]
D APL_1596 dacA; D-alanyl-D-alanine carboxypeptidase fraction A K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D APL_0420 pbpG; penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D APL_0945 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D APL_1280 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D APL_0376 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D APL_1890 lonH; putative protease La-like protein K04770 lonH; Lon-like ATP-dependent protease [EC:3.4.21.-]
D APL_1108 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D APL_0542 lepB; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D APL_0120 prc; tail-specific protease precursor K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D APL_1268 sppA; protease 4 K04773 sppA; protease IV [EC:3.4.21.-]
D APL_0008 sohB; putative protease SohB K04774 sohB; serine protease SohB [EC:3.4.21.-]
D APL_0871 pepE; peptidase E K05995 pepE; dipeptidase E [EC:3.4.13.21]
D APL_1736 hslV; ATP-dependent protease hslV K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D APL_1130 putative protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D APL_0729 pmbA; antibiotic maturation factor K03592 pmbA; PmbA protein
D APL_1540 tldD; TldD-like protein K03568 tldD; TldD protein
D APL_1076 hflC; protein HflC K04087 hflC; modulator of FtsH protease HflC
D APL_1077 hflK; protein HflK K04088 hflK; modulator of FtsH protease HflK
C 01003 Glycosyltransferases [BR:apl01003]
D APL_0349 glgA; glycogen synthase K00703 glgA; starch synthase [EC:2.4.1.21]
D APL_0476 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D APL_1823 pbpB; Penicillin-binding protein 1B (PBP1b) K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D APL_0195 mrcA; membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APL_1543 wecG; putative UDP-N-acetyl-D-mannosaminuronic acid transferase K02852 wecG; UDP-N-acetyl-D-mannosaminouronate:lipid I N-acetyl-D-mannosaminouronosyltransferase [EC:2.4.1.180]
D APL_1545 wecF; 4-alpha-L-fucosyltransferase K12582 wecF; dTDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [EC:2.4.1.325]
D APL_1554 wecA; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D APL_1469 glycosyl transferase, family 2 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D APL_1923 pgaC; biofilm PGA synthesis N-glycosyltransferase PgaC K11936 pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase [EC:2.4.1.-]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:apl01005]
D APL_0407 lpxA; Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D APL_0007 lpxB; Lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D APL_0024 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D APL_0409 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D APL_1808 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D APL_1278 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D APL_0900 lpxL; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D APL_0172 msbB; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase K02560 lpxM; lauroyl-Kdo2-lipid IVA myristoyltransferase [EC:2.3.1.243]
D APL_1132 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D APL_0904 kdkA; 3-deoxy-D-manno-octulosonic acid kinase K11211 kdkA; 3-deoxy-D-manno-octulosonic acid kinase [EC:2.7.1.166]
D APL_1578 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D APL_2040 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D APL_0085 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D APL_1577 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D APL_0051 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D APL_0387 kpsF; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D APL_1576 kpsF; arabinose-5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D APL_1402 rfaC; lipopolysaccharide heptosyltransferase 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D APL_0419 lgtF; UDP-glucose--lipooligosaccharide glucosyltransferase K12984 waaE; (heptosyl)LPS beta-1,4-glucosyltransferase [EC:2.4.1.-]
D APL_1403 rfaF; ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D APL_1131 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D APL_0186 ADP-heptose:LPS heptosyltransferase I K12982 opsX; heptosyltransferase I [EC:2.4.-.-]
D APL_0798 lpcA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D APL_0845 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D APL_0402 hldE; bifunctional protein HldE K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D APL_1710 hldD; ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D APL_1544 putative ECA polymerase K02853 wzyE; enterobacterial common antigen polymerase [EC:2.4.99.27]
D APL_1554 wecA; putative undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:apl01011]
D APL_1286 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D APL_1851 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D APL_0019 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D APL_0016 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D APL_0013 murE; UDP-N-acetylmuramyl-tripeptide synthetase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D APL_0020 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D APL_0252 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D APL_1841 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D APL_0015 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D APL_0018 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D APL_1557 mviN; virulence factor-like MviN K03980 murJ; putative peptidoglycan lipid II flippase
D APL_0195 mrcA; membrane carboxypeptidase/penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D APL_1823 pbpB; Penicillin-binding protein 1B (PBP1b) K05365 mrcB; penicillin-binding protein 1B [EC:2.4.99.28 3.4.16.4]
D APL_1599 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D APL_0012 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D APL_1596 dacA; D-alanyl-D-alanine carboxypeptidase fraction A K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D APL_0945 dacB; penicillin-binding protein 4 precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D APL_0420 pbpG; penicillin-binding protein 7 precursor K07262 pbpG; serine-type D-Ala-D-Ala endopeptidase (penicillin-binding protein 7) [EC:3.4.21.-]
D APL_0476 mtgA; monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D APL_0121 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB
D APL_0747 mepA; penicillin-insensitive murein endopeptidase precursor K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-]
D APL_0359 nlpC; putative lipoprotein K13694 mepS; murein DD-endopeptidase / murein LD-carboxypeptidase [EC:3.4.-.- 3.4.17.13]
D APL_0457 hypothetical metalloprotease K19304 mepM; murein DD-endopeptidase [EC:3.4.24.-]
D APL_0681 putative soluble lytic murein transglycosylase precursor K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D APL_0816 mltA; membrane-bound lytic murein transglycosylase A precursor K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29]
D APL_0642 mltB; membrane-bound lytic murein transglycosylase B K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29]
D APL_1741 mltC; Membrane-bound lytic murein transglycosylase C precursor K08306 mltC; peptidoglycan lytic transglycosylase C [EC:4.2.2.29]
D APL_1366 hypothetical protein K18691 mltF; peptidoglycan lytic transglycosylase F [EC:4.2.2.29]
D APL_1818 hypothetical protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D APL_1597 possible rare lipoprotein A RlpA-like protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D APL_1136 amiB; putative N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D APL_0316 ampD; signalling protein AmpD K03806 ampD; N-acetyl-anhydromuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:apl01004]
D APL_1993 fabD; Malonyl CoA-acyl carrier protein transacylase (MCT) K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D APL_1384 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase 3 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D APL_1055 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase 1 K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D APL_1992 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D APL_1889 fabA; 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14]
D APL_0408 fabZ; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D APL_0755 fabI; enoyl-[acyl-carrier-protein] reductase (NADH) K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D APL_0789 dioxygenase K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D APL_0971 putative acyl CoA thioester hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D APL_1413 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_0397 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_1107 plsB; glycerol-3-phosphate acyltransferase K00631 plsB; glycerol-3-phosphate O-acyltransferase [EC:2.3.1.15]
D APL_1385 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D APL_1341 hypothetical protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D APL_1488 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:apl01006]
D APL_0807 ispA; geranyltranstransferase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
D APL_1995 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D APL_0414 uppS; undecaprenyl pyrophosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D APL_1960 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D APL_1461 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D APL_0822 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:apl01007]
D APL_1275 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APL_0679 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D APL_1476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APL_1892 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D APL_0913 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D APL_0039 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APL_0352 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D APL_0044 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D APL_1502 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D APL_0872 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APL_0809 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D APL_1149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APL_0675 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D APL_1175 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D APL_1800 sygA; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D APL_1803 sygB; Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D APL_0868 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D APL_1830 syp; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D APL_0219 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D APL_0654 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D APL_0608 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D APL_0609 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D APL_0662 aspC; putative aspartate aminotransferase K00813 aspC; aspartate aminotransferase [EC:2.6.1.1]
D APL_1043 probable aminotransferase K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D APL_2021 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0700 hisC; histidinol-phosphate aminotransferase 2 K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D APL_0941 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D APL_0244 argD; acetylornithine aminotransferase (ACOAT) K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D APL_1974 argD; Diaminobutyrate--2-oxoglutarate aminotransferase K00836 ectB; diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]
D APL_0942 bioA; adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D APL_1555 hemL; glutamate-1-semialdehyde 2,1-aminomutase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D APL_0072 ilvE; branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D APL_0702 serC; phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D APL_1549 wecE; TDP-4-keto-6-deoxy-D-glucose transaminase K02805 wecE; dTDP-4-amino-4,6-dideoxygalactose transaminase [EC:2.6.1.59]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:apl00194]
D APL_1645 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D APL_1646 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D APL_1647 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D APL_1648 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D APL_1649 atpH; ATP synthase delta chain K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D APL_1650 atpF; ATP synthase B chain K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D APL_1651 atpE; ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D APL_1652 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D APL_1653 hypothetical protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:apl03000]
D APL_1202 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D APL_0131 gcvA; glycine cleavage system transcriptional activator-like protein K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D APL_0978 ilvY; HTH-type transcriptional activator IlvY K02521 ilvY; LysR family transcriptional regulator, positive regulator for ilvC
D APL_1158 metR; HTH-type transcriptional regulator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D APL_1481 oxyR; hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D APL_0133 cysB; HTH-type transcriptional regulator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator
D APL_0697 putative HTH-type transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
D APL_0823 glpR; glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D APL_1683 fucR; L-fucose operon activator K02430 fucR; DeoR family transcriptional regulator, L-fucose operon activator
D APL_1702 ulaR; HTH-type transcriptional regulator ulaR K03477 ulaR; DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor
D APL_1668 rbsR; ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D APL_1912 xylR; xylose operon regulatory protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D APL_2032 scrR; Sucrose operon repressor (Scr operon regulatory protein) K03484 scrR; LacI family transcriptional regulator, sucrose operon repressor
D APL_0819 purR; HTH-type transcriptional repressor PurR K03604 purR; LacI family transcriptional regulator, purine nucleotide synthesis repressor
D APL_1667 gntR; HTH-type transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
D APL_0323 fadR; fatty acid metabolism regulator protein K03603 fadR; GntR family transcriptional regulator, negative regulator for fad regulon and positive regulator of fabA
D APL_0571 gntR; HTH-type transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D APL_0585 hypothetical protein K18136 acrR; TetR/AcrR family transcriptional regulator, multidrug resistance operon repressor
D APL_1967 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator
D APL_1480 putative HTH-type transcriptional regulator K22105 fabR; TetR/AcrR family transcriptional regulator, fatty acid biosynthesis regulator
D APL_1838 asnC; Regulatory protein asnC K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D APL_0617 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D APL_1233 malT; HTH-type transcriptional regulator MalT K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D APL_1262 transcriptional regulator MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D APL_1218 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D APL_0108 iclR; putative HTH-type transcriptional regulator K21602 yiaJ; IclR family transcriptional regulator, carbohydrate utilization repressor
D APL_1965 crp; Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein) K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D APL_0656 hlyX; regulatory protein HlyX K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D APL_0932 putative HTH-type transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D APL_1090 arsR; putative transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D APL_1850 birA; Bifunctional protein birA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D APL_0190 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D APL_0475 trpR; Trp operon repressor K03720 trpR; TrpR family transcriptional regulator, trp operon repressor
D APL_0046 nadR; transcriptional regulator NadR K06211 nadR; HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes [EC:2.7.7.1 2.7.1.22]
D APL_0140 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D APL_1917 metJ; transcriptional repressor protein MetJ K03764 metJ; MetJ family transcriptional regulator, methionine regulon repressor
D APL_0106 putA; bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D APL_0235 bolA; stress-induced morphogen (activity unknown) K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D APL_1295 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D APL_0615 mlc; putative transcriptional repressor of carbohydrate metabolism K15545 mlc; transcriptional regulator of PTS gene
D APL_1628 hypothetical protein K02562 mtlR; mannitol operon repressor
D APL_0537 putative transcriptional activator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D APL_0797 tyrR; transcriptional regulatory protein TyrR K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D APL_0401 pyrR; PyrR bifunctional protein K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D APL_0232 hypothetical protein K07735 algH; putative transcriptional regulator
D APL_0175 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D APL_0711 transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D APL_0498 hypothetical protein K22302 dicC; transcriptional repressor of cell division inhibition gene dicB
D APL_0009 hypothetical protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:apl03021]
D APL_1784 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D APL_1727 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D APL_1728 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D APL_1826 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D APL_1475 rpoD; RNA polymerase sigma factor 70 K03086 rpoD; RNA polymerase primary sigma factor
D APL_0394 rpoE; RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D APL_1831 DNA-directed RNA polymerase specialized sigma subunit, sigma-24 like protein K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D APL_1834 rpoH; RNA polymerase sigma-32 factor K03089 rpoH; RNA polymerase sigma-32 factor
D APL_0314 hepA; ATP-dependent helicase HepA K03580 hepA; ATP-dependent helicase HepA [EC:5.6.2.-]
D APL_0638 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D APL_0201 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D APL_1717 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D APL_0658 sspA; stringent starvation protein A-like protein K03599 sspA; stringent starvation protein A
D APL_0657 sspB; stringent starvation protein B K03600 sspB; stringent starvation protein B
D APL_0395 rseA; putative sigma-E factor negative regulatory protein K03597 rseA; sigma-E factor negative regulatory protein RseA
D APL_0396 rseC; putative sigma-E factor regulatory protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D APL_0175 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D APL_0944 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D APL_0386 greB; transcription elongation factor GreB K04760 greB; transcription elongation factor GreB
D APL_0247 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:apl03019]
D APL_1436 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D APL_0810 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D APL_0543 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D APL_1478 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D APL_1134 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D APL_0560 rhlB; ATP-dependent RNA helicase RhlB K03732 rhlB; ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
D APL_0575 deaD; cold-shock DEAD box protein A-like protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D APL_1116 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D APL_1113 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APL_0577 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D APL_0247 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D APL_1124 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D APL_1906 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D APL_1012 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APL_1961 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D APL_0176 pcnB; putative poly(A) polymerase K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D APL_1897 nudH; Probable (di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D APL_0653 csrA; carbon storage regulator CsrA K03563 csrA; carbon storage regulator
D APL_1901 rraA; Regulator of ribonuclease activity A K02553 rraA; regulator of ribonuclease activity A
D APL_0093 hypothetical protein K09893 rraB; regulator of ribonuclease activity B
D APL_0334 hypothetical protein K06958 rapZ; RNase adapter protein RapZ
D APL_0365 hrpA; ATP-dependent RNA helicase K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:apl03011]
D APL_0740 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D APL_0566 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D APL_1766 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D APL_1783 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D APL_1776 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D APL_1171 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D APL_1400 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D APL_1773 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D APL_0601 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D APL_1759 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D APL_1782 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D APL_1401 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D APL_1781 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D APL_1772 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D APL_1005 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D APL_1786 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D APL_1769 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D APL_1764 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D APL_1558 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D APL_1473 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D APL_1719 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D APL_1763 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D APL_1760 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D APL_1761 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D APL_1771 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D APL_1774 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D APL_1169 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D APL_1720 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D APL_1718 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D APL_1721 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D APL_0600 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D APL_1778 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D APL_1767 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D APL_1785 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D APL_1775 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D APL_1789 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D APL_0225 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D APL_1999 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D APL_1765 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D APL_1762 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D APL_1770 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D APL_2000 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D APL_1971 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D APL_1768 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D APL_1777 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D APL_1821 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D APL_0982 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D APL_1386 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D APL_1972 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D APL_1938 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D APL_0224 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D APL_1780 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APL_1822 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D APL_0487 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D APL_2121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2122 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2123 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2126 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2125 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2124 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2111 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2113 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2109 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2110 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2114 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2112 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2118 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2119 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2117 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2120 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2115 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:apl03009]
D APL_0543 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D APL_1134 orn; oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D APL_0544 era; GTP-binding protein Era-like protein K03595 era; GTPase
D APL_0040 yhbZ; hypothetical GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-]
D APL_0175 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D APL_0638 nusA; transcription elongation protein NusA K02600 nusA; transcription termination/antitermination protein NusA
D APL_0201 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D APL_1717 nusG; Transcription antitermination protein nusG K02601 nusG; transcription termination/antitermination protein NusG
D APL_0354 rsuA; ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D APL_0399 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D APL_1560 rsmB; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D APL_2005 rsmC; Ribosomal RNA small subunit methyltransferase C K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D APL_1347 putative methylase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D APL_0233 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D APL_1654 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D APL_0010 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D APL_1361 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D APL_1871 hypothetical protein K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242]
D APL_0042 rlmB; 23S rRNA (guanosine-2'-O-)-methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D APL_0594 ftsJ; ribosomal RNA large subunit methyltransferase J K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
D APL_1600 hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D APL_0317 yhiR; hypothetical protein K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266]
D APL_0060 putative N6-adenine-specific DNA methylase K12297 rlmKL; 23S rRNA (guanine2069-N7)-methyltransferase / 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.264 2.1.1.173]
D APL_0685 mtfA; putative RNA 2'-O-ribose methyltransferase MtfA K06968 rlmM; 23S rRNA (cytidine2498-2'-O)-methyltransferase [EC:2.1.1.186]
D APL_1274 hypothetical protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D APL_0312 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D APL_1112 rumA; 23S rRNA (uracil-5-)-methyltransferase RumB K03212 rumB; 23S rRNA (uracil747-C5)-methyltransferase [EC:2.1.1.189]
D APL_0229 rluA; predicted RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APL_0315 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APL_1160 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D APL_1877 rluC; Ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D APL_1122 rluD; ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D APL_0088 rluE; ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
D APL_0205 predicted rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D APL_2007 rimI; Ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S18) K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D APL_0484 rimK; ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
D APL_1787 rimM; 16S rRNA-processing protein rimM K02860 rimM; 16S rRNA processing protein RimM
D APL_1636 hypothetical protein K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D APL_0811 hypothetical protein K09136 ycaO; ribosomal protein S12 methylthiotransferase accessory factor
D APL_1537 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D APL_0943 hypothetical adenine-specific methylase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298]
D APL_1790 Protein HI0396 K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47]
D APL_1436 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D APL_0810 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D APL_0231 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D APL_0575 deaD; cold-shock DEAD box protein A-like protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D APL_2008 srmB; ATP-dependent RNA helicase K05590 srmB; ATP-dependent RNA helicase SrmB [EC:5.6.2.7]
D APL_0130 engC; putative GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D APL_0403 engA; GTP-binding protein EngA K03977 engA; GTPase
D APL_1962 hflX; GTP-binding protein hflX K03665 hflX; GTPase
D APL_1140 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D APL_1825 spoT; Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp)ase) K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D APL_0640 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D APL_0637 hypothetical protein K09748 rimP; ribosome maturation factor RimP
D APL_1601 hypothetical protein K09710 ybeB; ribosome-associated protein
D APL_0694 hypothetical protein K07042 ybeY; probable rRNA maturation factor
D APL_0418 hypothetical protein K07574 yhbY; RNA-binding protein
D APL_0730 hypothetical protein K09889 yjgA; ribosome-associated protein
D APL_0901 ribosome-associated inhibitor A K05809 raiA; ribosome-associated inhibitor A
D APL_0034 engD; GTP-dependent nucleic acid-binding protein EngD K06942 ychF; ribosome-binding ATPase
D APL_1387 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:apl03016]
D APL_1269 putative ribonuclease K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
D APL_0915 Multifunctional CCA protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D APL_1275 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APL_1830 syp; Prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D APL_0044 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D APL_0872 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APL_0352 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D APL_0679 glnS; glutaminyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D APL_0039 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APL_0809 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D APL_1149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APL_0654 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D APL_0675 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D APL_0219 thrS; threonyl-tRNA synthetase ThrS K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D APL_0868 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D APL_0913 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D APL_1502 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D APL_1175 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D APL_0608 pheS; phenylalanyl-tRNA synthetase alpha chain K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D APL_0609 pheT; phenylalanyl-tRNA synthetase beta chain K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D APL_1476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APL_1892 trpS; Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D APL_1949 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D APL_0126 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D APL_1383 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D APL_1459 hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D APL_0902 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D APL_0641 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D APL_1926 truD; tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D APL_0931 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APL_1140 hypothetical protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D APL_1960 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D APL_1490 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D APL_1655 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D APL_0327 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D APL_1312 cysQ; CysQ-like protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D APL_1939 rnpA; ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D APL_0182 dnaQ; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases K03683 rnt; ribonuclease T [EC:3.1.13.-]
D APL_0055 rph; ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D APL_0757 rnb; exoribonuclease 2 K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D APL_0616 rnd; ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D APL_1283 ABC transporter ATP-binding protein K06020 ettA; energy-dependent translational throttle protein EttA
D APL_1800 sygA; Glycyl-tRNA synthetase alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D APL_1803 sygB; Glycyl-tRNA synthetase beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D APL_1221 hypothetical protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D APL_0270 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D APL_0574 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D APL_0146 dusA; tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D APL_0189 dus; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D APL_0307 dusC; tRNA-dihydrouridine synthase C K05541 dusC; tRNA-dihydrouridine synthase C [EC:1.-.-.-]
D APL_1325 hypothetical protein K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D APL_0754 yecO; S-adenosyl-L-methionine-dependent methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D APL_0814 hypothetical protein K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D APL_1979 trmA; tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D APL_1788 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D APL_0205 predicted rRNA methyltransferase K03214 yfiF; RNA methyltransferase, TrmH family [EC:2.1.1.-]
D APL_0843 hypothetical tRNA/rRNA methyltransferase K15396 trmJ; tRNA (cytidine32/uridine32-2'-O)-methyltransferase [EC:2.1.1.200]
D APL_0061 yibK; putative tRNA/rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D APL_1900 hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D APL_0862 truC; tRNA pseudouridine synthase C K06175 truC; tRNA pseudouridine65 synthase [EC:5.4.99.26]
D APL_0229 rluA; predicted RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APL_0315 rluA; ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D APL_0158 trmU; putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D APL_0975 hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D APL_0092 sirA; sulfurtransferase K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
D APL_1644 hypothetical protein K07237 tusB; tRNA 2-thiouridine synthesizing protein B
D APL_1643 hypothetical protein K07236 tusC; tRNA 2-thiouridine synthesizing protein C
D APL_1642 tusD; sulfurtransferase TusD-like protein K07235 tusD; tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-]
D APL_0273 putative dissimilatory sulfite reductase K11179 tusE; tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
D APL_0929 iscA; iron-binding protein IscA K13628 iscA; iron-sulfur cluster assembly protein
D APL_0057 hypothetical protein K06980 ygfZ; tRNA-modifying protein YgfZ
D APL_0858 hypothetical protein K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D APL_0765 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D APL_1097 queC; queuosine biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D APL_1098 putative 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D APL_1099 hypothetical protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D APL_0844 queF; NADPH-dependent 7-cyano-7-deazaguanine reductase K06879 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D APL_1994 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D APL_0723 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D APL_1074 thiI; thiamine biosynthesis protein ThiI K03151 thiI; tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
D APL_1541 tilS; tRNA(Ile)-lysidine synthase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D APL_0695 hypothetical protein K06957 tmcA; tRNA(Met) cytidine acetyltransferase [EC:2.3.1.193]
D APL_0621 putative M22-like peptidase K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D APL_1120 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D APL_1135 hypothetical protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D APL_0295 hypothetical protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D APL_1478 vacB; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D APL_0577 pnp; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D APL_1731 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APL_0665 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
C 03012 Translation factors [BR:apl03012]
D APL_0735 hypothetical protein K03113 EIF1; translation initiation factor 1
D APL_0639 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D APL_0223 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D APL_0309 yheS; putative ABC transporter ATP-binding protein YheS K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D APL_0567 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D APL_1398 tufB; elongation factor Tu K02358 tuf; elongation factor Tu
D APL_1512 tufB; elongation factor Tu K02358 tuf; elongation factor Tu
D APL_1399 fusA; elongation factor G K02355 fusA; elongation factor G
D APL_1561 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D APL_2044 prfA; Peptide chain release factor 1 (RF-1) K02835 prfA; peptide chain release factor 1
D APL_0570 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D APL_2042 hemK; HemK-like protein K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D APL_0033 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D APL_1228 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D APL_0678 efp; elongation factor P K02356 efp; elongation factor P
D APL_1530 poxA; putative lysyl-tRNA synthetase K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-]
D APL_0676 hypothetical protein K19810 epmB; L-lysine 2,3-aminomutase [EC:5.4.3.-]
D APL_1360 hypothetical protein K09906 epmC; elongation factor P hydroxylase [EC:1.14.-.-]
D APL_0326 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D APL_0030 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
D APL_0761 hypothetical protein K09890 arfA; alternative ribosome-rescue factor
C 03110 Chaperones and folding catalysts [BR:apl03110]
D APL_1087 clpB; chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D APL_1279 clpX; ATP-dependent Clp protease ATP-binding subunit K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D APL_1735 hslU; ATP-dependent hsl protease ATP-binding subunit hslU K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D APL_0987 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D APL_1906 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D APL_0925 hscA; chaperone protein HscA-like protein K04044 hscA; molecular chaperone HscA
D APL_1012 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APL_1905 dnaJ; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D APL_0306 djlA; DnaJ-like protein DjlA K05801 djlA; DnaJ like chaperone protein
D APL_0928 hscB; co-chaperone protein HscB-like protein K04082 hscB; molecular chaperone HscB
D APL_1315 hslO; heat shock-like protein 33 K04083 hslO; molecular chaperone Hsp33
D APL_0367 grpE; heat shock protein (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D APL_1314 hslR; heat shock-like protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D APL_1013 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES
D APL_1293 htrA; probable periplasmic serine protease do/hhoA-like precursor K04771 degP; serine protease Do [EC:3.4.21.107]
D APL_0595 ftsH; cell division protease FtsH-like protein K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D APL_1652 atpB; ATP synthase A chain K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D APL_1509 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D APL_1338 hybF; putative hydrogenase nickel incorporation protein HybF K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D APL_1327 hypB; hydrogenase isoenzymes nickel incorporation protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D APL_1797 torD; chaperone protein TorD K03533 torD; TorA specific chaperone
D APL_1677 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D APL_1096 hypothetical protein K12373 HEXA_B; hexosaminidase [EC:3.2.1.52]
D APL_0914 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D APL_1003 ppiD; peptidyl-prolyl cis-trans isomerase D K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D APL_1640 fkpA; putative FKBP-type peptidyl-prolyl cis-trans isomerase K03772 fkpA; FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
D APL_1705 FKBP-type peptidyl-prolyl cis-trans isomerase K03773 fklB; FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
D APL_1456 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D APL_0400 surA; peptidyl-prolyl cis-trans isomerase SurA K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D APL_1078 trxA; thioredoxin K03671 TXN; thioredoxin
D APL_0080 putative thioredoxin-like protein K05838 ybbN; putative thioredoxin
D APL_0054 grxA; glutaredoxin K03674 grxA; glutaredoxin 1
D APL_0073 ydhD; monothiol glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D APL_1868 dsbA; Thiol:disulfide interchange protein dsbA precursor K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APL_1638 dsbA_2; thiol disulfide oxidoreductase K03673 dsbA; protein dithiol oxidoreductase (disulfide-forming) [EC:1.8.4.15]
D APL_0321 dsbB; disulfide bond formation protein B K03611 dsbB; protein dithiol:quinone oxidoreductase [EC:1.8.5.9]
D APL_0458 dsbC; thiol:disulfide interchange protein DsbC precursor K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D APL_1359 dsbD; thiol:disulfide interchange protein DsbD precursor K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
D APL_1514 dsbE; thiol:disulfide interchange protein DsbE K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
D APL_1051 nrfX; disulfide bound formation protein E (dsbE) K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
C 04131 Membrane trafficking [BR:apl04131]
D APL_0351 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D APL_0434 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D APL_0832 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D APL_0187 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APL_0987 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:apl04121]
C 03051 Proteasome [BR:apl03051]
D APL_0987 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:apl03032]
D APL_0423 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D APL_1202 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D APL_0114 hupA; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D APL_0610 ihfA; integration host factor, alpha chain K04764 ihfA; integration host factor subunit alpha
D APL_0739 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D APL_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D APL_0713 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D APL_1474 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D APL_0783 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D APL_1105 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APL_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APL_1505 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APL_0874 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APL_1816 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APL_1282 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APL_0265 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APL_2006 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APL_0129 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D APL_0473 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APL_1302 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D APL_0192 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_0495 putative DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_0752 seqA; DNA replication inhibitor protein K03645 seqA; negative modulator of initiation of replication
D APL_1373 hypothetical protein K10763 hda; DnaA-homolog protein
D APL_0286 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D APL_0821 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D APL_0578 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APL_1255 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APL_0696 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D APL_0744 topB2; DNA topoisomerase 3 K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:apl03036]
D APL_1202 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D APL_0543 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D APL_0448 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D APL_0114 hupA; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D APL_0610 ihfA; integration host factor, alpha chain K04764 ihfA; integration host factor subunit alpha
D APL_0739 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D APL_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D APL_1364 gmhA; putative phosphoheptose isomerase K12961 diaA; DnaA initiator-associating protein
D APL_1494 ftpA; fine tangled pili major subunit K04047 dps; starvation-inducible DNA-binding protein
D APL_0190 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D APL_1961 hfq; RNA-binding protein Hfq K03666 hfq; host factor-I protein
D APL_0617 lrp; leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D APL_0429 nucleoid-associated protein NdpA K06899 ndpA; nucleoid-associated protein
D APL_0581 mukB; chromosome partition protein MukB K03632 mukB; chromosome partition protein MukB
D APL_0580 mukE; chromosome partition protein MukE K03804 mukE; chromosome partition protein MukE
D APL_0579 mukF; chromosome partition protein MukF K03633 mukF; chromosome partition protein MukF
D APL_0022 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D APL_0801 ftsB; cell division protein FtsB-like protein K05589 ftsB; cell division protein FtsB
D APL_1345 fstE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D APL_0012 ftsI; peptidoglycan synthetase FtsI K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D APL_0618 ftsK; DNA translocase FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D APL_0011 ftsL; cell division protein FtsL K03586 ftsL; cell division protein FtsL
D APL_1870 hypothetical protein K03591 ftsN; cell division protein FtsN
D APL_0021 ftsQ; cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D APL_0017 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D APL_1344 fstX; cell division protein FtsX-like protein K09811 ftsX; cell division transport system permease protein
D APL_0023 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D APL_1303 zipA; cell division ZipA-like protein K03528 zipA; cell division protein ZipA
D APL_0110 hypothetical protein K09888 zapA; cell division protein ZapA
D APL_0623 hypothetical protein K09892 zapB; cell division protein ZapB
D APL_1136 amiB; putative N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D APL_0586 putative RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APL_1967 slmA; HTH-type protein slmA K05501 slmA; TetR/AcrR family transcriptional regulator
D APL_0752 seqA; DNA replication inhibitor protein K03645 seqA; negative modulator of initiation of replication
D APL_0435 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D APL_0436 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D APL_0437 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D APL_1598 mrdB; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D APL_0578 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APL_1255 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APL_1655 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D APL_1654 gidB; methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D APL_1805 xerC; Tyrosine recombinase xerC K03733 xerC; integrase/recombinase XerC
D APL_1542 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D APL_1000 mrp; Mrp-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D APL_0860 fic; filamentation induced by cAMP protein Fic-like protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D APL_0094 engB; putative GTP-binding protein EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:apl03400]
D APL_0934 ogt; methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D APL_0362 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D APL_1739 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D APL_0886 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D APL_0241 mutT; mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D APL_1968 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D APL_1931 tagI; 3-methyladenine-DNA glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D APL_1990 mutM; Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D APL_0977 xthA; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D APL_0358 nfo; putative endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D APL_0459 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D APL_1302 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D APL_0473 polA; DNA polymerase I (POL I) K02335 polA; DNA polymerase I [EC:2.7.7.7]
D APL_0782 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D APL_0667 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D APL_0277 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D APL_1326 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D APL_1727 rpoB; DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D APL_1728 rpoC; DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D APL_1784 rpoA; DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D APL_1826 rpoZ; DNA-directed RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D APL_1339 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D APL_1602 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D APL_1958 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D APL_1109 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D APL_0673 sbcB; exodeoxyribonuclease I K01141 sbcB; exodeoxyribonuclease I [EC:3.1.11.1]
D APL_0817 xseA; putative exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D APL_0806 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D APL_1105 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D APL_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D APL_1505 holC; DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
D APL_0874 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D APL_1816 holB; DNA polymerase III subunit delta K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D APL_1282 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D APL_0265 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D APL_2006 holD; DNA polymerase III psi subunit protein K02344 holD; DNA polymerase III subunit psi [EC:2.7.7.7]
D APL_0783 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D APL_0192 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_0495 putative DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_1200 putative DNA mismatch endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
D APL_0370 recB; exodeoxyribonuclease V beta chain K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D APL_1884 recC; Exodeoxyribonuclease V gamma chain K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
D APL_0253 recD; exodeoxyribonuclease V alpha chain K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D APL_1143 recA; recombinase A K03553 recA; recombination protein RecA
D APL_0283 ruvA; holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D APL_0284 ruvB; holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D APL_1153 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D APL_0503 rusA; predicted Endodeoxyribonuclease RusA K01160 rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]
D APL_1032 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D APL_1170 priB; primosomal replication protein n K02686 priB; primosomal replication protein N
D APL_0650 hypothetical protein K04067 priC; primosomal replication protein N''
D APL_0881 radA; DNA repair protein RadA-like protein K04485 radA; DNA repair protein RadA/Sms
D APL_0003 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D APL_1827 recG; ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D APL_0545 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D APL_0074 recR; recombination protein RecR K06187 recR; recombination protein RecR
D APL_0025 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D APL_0494 rdgC; Recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D APL_0161 rdgC; recombination-associated protein RdgC K03554 rdgC; recombination associated protein RdgC
D APL_0214 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D APL_0562 hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
D APL_0286 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D APL_0821 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D APL_0696 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D APL_0114 hupA; DNA-binding protein HU K05787 hupA; DNA-binding protein HU-alpha
D APL_0190 fis; DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
D APL_0610 ihfA; integration host factor, alpha chain K04764 ihfA; integration host factor subunit alpha
D APL_0739 ihfB; integration host factor beta-subunit K05788 ihfB; integration host factor subunit beta
D APL_1116 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D APL_0448 hns; DNA-binding protein H-NS K03746 hns; DNA-binding protein H-NS
D APL_1040 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D APL_1108 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D APL_1142 recX; regulatory protein RecX K03565 recX; regulatory protein
D APL_0279 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D APL_0781 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D APL_0992 nrdA; ribonucleoside-diphosphate reductase alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APL_0148 rnr1; ribonucleoside-diphosphate reductase large chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D APL_0993 nrdB; ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D APL_0147 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:apl03029]
D APL_0639 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D APL_0223 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D APL_0567 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D APL_1398 tufB; elongation factor Tu K02358 tuf; elongation factor Tu
D APL_1512 tufB; elongation factor Tu K02358 tuf; elongation factor Tu
D APL_1399 fusA; elongation factor G K02355 fusA; elongation factor G
D APL_0544 era; GTP-binding protein Era-like protein K03595 era; GTPase
D APL_1476 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D APL_0872 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D APL_1149 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D APL_0039 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D APL_0783 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D APL_0411 D15; protective surface antigen D15 precursor K07277 SAM50; outer membrane protein insertion porin family
D APL_1906 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D APL_0367 grpE; heat shock protein (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D APL_1012 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APL_1013 groES; 10 kDa chaperonin K04078 groES; chaperonin GroES
D APL_1905 dnaJ; Chaperone protein dnaJ K03686 dnaJ; molecular chaperone DnaJ
D APL_0931 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D APL_0928 hscB; co-chaperone protein HscB-like protein K04082 hscB; molecular chaperone HscB
D APL_0073 ydhD; monothiol glutaredoxin-like protein K07390 grxD; monothiol glutaredoxin
D APL_1000 mrp; Mrp-like protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D APL_1424 oxaA; inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APL_0987 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:apl02000]
D APL_0778 msbA; lipid A export ATP-binding/permease protein MsbA K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D APL_1443 apxIB; toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APL_1215 hypothetical ABC transporter ATP-binding protein K18893 vcaM; ATP-binding cassette, subfamily B, multidrug efflux pump
D APL_0826 cydC; transport ATP-binding protein CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC
D APL_0827 cydD; transport ATP-binding protein CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD
D APL_0626 macB; putative macrolide-specific ABC-type efflux carrier K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D APL_0294 uupA; ABC transporter ATP-binding protein Uup-1 K15738 uup; ABC transport system ATP-binding/permease protein
D APL_1845 sbp; sulfate-binding protein precursor K23163 sbp; sulfate/thiosulfate transport system substrate-binding protein
D APL_1846 cysT; Sulfate transport system permease protein cysT K02046 cysU; sulfate/thiosulfate transport system permease protein
D APL_1847 cysW; Sulfate transport system permease protein cysW K02047 cysW; sulfate/thiosulfate transport system permease protein
D APL_1848 cysA; Sulfate/thiosulfate import ATP-binding protein cysA K02045 cysA; sulfate/thiosulfate transport system ATP-binding protein [EC:7.3.2.3]
D APL_0262 modA; molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D APL_0261 modB; molybdenum transport system permease protein ModB K02018 modB; molybdate transport system permease protein
D APL_0260 modC; molybdenum import ATP-binding protein ModC K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D APL_1586 modF; putative molybdenum transport ATP-binding protein K05776 modF; molybdate transport system ATP-binding protein
D APL_1446 afuA; ABC-type Fe3+ transport system, periplasmic component K02012 afuA; iron(III) transport system substrate-binding protein
D APL_0563 afuA_2; Fe3+ ABC transporter, iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D APL_1447 afuB; Ferric transport system permease protein fbpB K02011 afuB; iron(III) transport system permease protein
D APL_0564 afuB_2; Ferric transport system permease protein K02011 afuB; iron(III) transport system permease protein
D APL_1448 afuC; ferric ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D APL_0174 tbpA; thiamine-binding periplasmic protein precursor K02064 thiB; thiamine transport system substrate-binding protein
D APL_1321 thiP; thiamine transport system permease protein ThiP K02063 thiP; thiamine transport system permease protein
D APL_1320 thiQ; thiamine transport ATP-binding protein ThiQ K02062 thiQ; thiamine transport system ATP-binding protein [EC:7.6.2.15]
D APL_0368 potD2; spermidine/putrescine-binding periplasmic protein 1 precursor K11069 potD; spermidine/putrescine transport system substrate-binding protein
D APL_0282 potC; spermidine/putrescine transport system permease protein PotC K11070 potC; spermidine/putrescine transport system permease protein
D APL_0281 potB; spermidine/putrescine transport system permease protein potB K11071 potB; spermidine/putrescine transport system permease protein
D APL_0280 potA; spermidine/putrescine import ATP-binding protein PotA K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D APL_0538 putative ABC transporter substrate-binding protein K15598 thiY; putative hydroxymethylpyrimidine transport system substrate-binding protein
D APL_0531 putative ABC transporter permease protein K15599 thiX; putative hydroxymethylpyrimidine transport system permease protein
D APL_1237 malE; maltose-binding periplasmic protein precursor K10108 malE; maltose/maltodextrin transport system substrate-binding protein
D APL_1238 malF; maltose transport system permease protein MalF K10109 malF; maltose/maltodextrin transport system permease protein
D APL_1239 malG; maltose transport system permease protein MalG K10110 malG; maltose/maltodextrin transport system permease protein
D APL_1236 malK; maltose/maltodextrin import ATP-binding protein MalK K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D APL_1420 mglB; D-galactose-binding periplasmic protein precursor K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APL_0450 mglB; D-galactose-binding periplasmic protein precursor K10540 mglB; methyl-galactoside transport system substrate-binding protein
D APL_1418 mglC; galactoside transport system permease protein MglC K10541 mglC; methyl-galactoside transport system permease protein
D APL_1419 mglA; galactoside transport ATP-binding protein MglA K10542 mglA; methyl-galactoside transport system ATP-binding protein [EC:7.5.2.11]
D APL_1909 xylF; D-xylose-binding periplasmic protein precursor K10543 xylF; D-xylose transport system substrate-binding protein
D APL_1911 xylH; Xylose transport system permease protein xylH K10544 xylH; D-xylose transport system permease protein
D APL_1910 xylG; D-xylose transport ATP-binding protein xylG K10545 xylG; D-xylose transport system ATP-binding protein [EC:7.5.2.10]
D APL_1672 rbsB; D-ribose-binding periplasmic protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D APL_1671 rbsC; ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D APL_1670 rbsA; ribose transport ATP-binding protein RbsA K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D APL_1290 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D APL_1291 hypothetical protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D APL_1292 predicted ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D APL_1289 hypothetical protein K07323 mlaC; phospholipid transport system substrate-binding protein
D APL_1288 hypothetical protein K07122 mlaB; phospholipid transport system transporter-binding protein
D APL_1261 pstS; phosphate-binding periplasmic protein precursor K02040 pstS; phosphate transport system substrate-binding protein
D APL_1260 pstC; phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D APL_1259 pstA; phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D APL_1258 pstB; phosphate import ATP-binding protein PstB K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D APL_1353 artI; arginine-binding periplasmic protein precursor K09997 artI; arginine transport system substrate-binding protein
D APL_1351 artM; arginine transport system permease protein ArtM K09998 artM; arginine transport system permease protein
D APL_1352 artQ; arginine transport system permease protein ArtQ K09999 artQ; arginine transport system permease protein
D APL_1354 artP; arginine transport ATP-binding protein ArtP K10000 artP; arginine transport system ATP-binding protein [EC:7.4.2.1]
D APL_1657 putative amino-acid ABC transporter-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D APL_1604 hypothetical amino-acid ABC transporter permease protein K10009 tcyB; L-cystine transport system permease protein
D APL_1603 putative amino-acid ABC transporter ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D APL_0909 plpB; outer membrane lipoprotein 2 precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APL_0910 plpA; outer membrane lipoprotein 1 precursor K02073 metQ; D-methionine transport system substrate-binding protein
D APL_0911 metI; D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D APL_0912 metN; D-methionine transport ATP-binding protein MetN K02071 metN; D-methionine transport system ATP-binding protein
D APL_1694 antigenic protein, ABC transporter-like protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D APL_1691 putative ABC transporter, permease protein, amino acid K02029 ABC.PA.P; polar amino acid transport system permease protein
D APL_1692 putative ABC transporter, permease protein, amino acid K02029 ABC.PA.P; polar amino acid transport system permease protein
D APL_1693 putative amino-acid ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D APL_0064 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APL_2010 hbpA; Heme-binding protein A K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0063 dppA; periplasmic dipeptide transport protein K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0855 hbpA; heme-binding protein A precursor K12368 dppA; dipeptide transport system substrate-binding protein
D APL_0065 dppB; dipeptide transport system permease protein DppB K12369 dppB; dipeptide transport system permease protein
D APL_0066 dppC; dipeptide transport system permease protein DppC K12370 dppC; dipeptide transport system permease protein
D APL_0067 dppD; dipeptide transport ATP-binding protein DppD K12371 dppD; dipeptide transport system ATP-binding protein
D APL_0068 dppF; dipeptide transport ATP-binding protein DppF K12372 dppF; dipeptide transport system ATP-binding protein
D APL_0796 sapA; peptide transport periplasmic protein SapA precursor K19226 sapA; cationic peptide transport system substrate-binding protein
D APL_0795 sapB; peptide transport system permease protein SapB K19227 sapB; cationic peptide transport system permease protein
D APL_0794 sapC; peptide transport system permease protein SapC K19228 sapC; cationic peptide transport system permease protein
D APL_0793 sapD; peptide transport system ATP-binding protein SapD K19229 sapD; cationic peptide transport system ATP-binding protein
D APL_1249 sapF; peptide transport system ATP-binding protein SapF K19230 sapF; cationic peptide transport system ATP-binding protein
D APL_0029 ABC transporter periplasmic protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APL_1001 putative binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APL_0848 putative ABC transporter periplasmic binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D APL_0849 inner membrane ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APL_0028 ABC transporter permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D APL_0027 nickel transport system permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D APL_0850 ABC transporter, ATP-binding/permease K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APL_0026 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D APL_0851 ABC transporter, ATP-binding subunit K02032 ddpF; peptide/nickel transport system ATP-binding protein
D APL_2014 ABC-type Fe3+-hydroxamate transport system; FhuD K23227 fhuD; ferric hydroxamate transport system substrate-binding protein
D APL_2015 fhuB; Ferrichrome uptake protein fhuB K23228 fhuB; ferric hydroxamate transport system permease protein
D APL_2013 fhuC; Ferrichrome transport ATP-binding protein fhuC K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16]
D APL_0714 ABC transport system periplasmic protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D APL_0716 iron(III) ABC transporter, permease protein K25283 yclO; iron-siderophore transport system permease protein
D APL_0715 ABC transport system permease protein K25284 yclN; iron-siderophore transport system permease protein
D APL_0717 iron(III) ABC transporter, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D APL_1795 putative periplasmic iron/siderophore binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D APL_1792 Fe(III) dicitrate ABC transporter, permease K02015 ABC.FEV.P; iron complex transport system permease protein
D APL_1793 Fe(III) dicitrate ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D APL_1440 znuA; high-affinity zinc uptake system protein ZnuA precursor K09815 znuA; zinc transport system substrate-binding protein
D APL_0439 znuB; high-affinity zinc uptake system membrane protein ZnuB K09816 znuB; zinc transport system permease protein
D APL_0456 znuC; high-affinity zinc uptake system ATP-binding protein ZnuC K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D APL_0272 yfeA; iron (chelated) ABC transporter, periplasmic-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D APL_0128 yfeC; putative iron transport system membrane protein K11605 sitC; manganese/iron transport system permease protein
D APL_0127 yfeD; putative iron transport system membrane protein K11606 sitD; manganese/iron transport system permease protein
D APL_0271 putative chelated iron transport system ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D APL_1621 cbiQ; putative ABC transport permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D APL_1622 cbiM; predicted ABC transport permease protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D APL_1620 cbiO; predicted ABC transport ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D APL_1624 cbiK; putative periplasmic binding protein CbiK K10094 cbiK; nickel transport protein
D APL_1623 cbiL; putative cytoplasmic membrane protein CbiL K16915 cbiL; nickel transport protein
D APL_1584 cpxB; capsule polysaccharide export inner-membrane protein K09688 kpsM; capsular polysaccharide transport system permease protein
D APL_1583 cpxC; capsule polysaccharide export inner-membrane protein K10107 kpsE; capsular polysaccharide transport system permease protein
D APL_1585 cpxA; ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D APL_1463 putative ABC-transporter K09690 wzm; homopolymeric O-antigen transport system permease protein
D APL_1464 wzm; ABC transporter integral membrane subunit K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D APL_1103 hypothetical protein K07091 lptF; lipopolysaccharide export system permease protein
D APL_1104 hypothetical protein K11720 lptG; lipopolysaccharide export system permease protein
D APL_0336 yhgB; putative ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D APL_2038 lolC; Lipoprotein-releasing system transmembrane protein lolC K09808 lolC_E; lipoprotein-releasing system permease protein
D APL_2036 lolE; lipoprotein-releasing system transmembrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D APL_2037 lolD; Lipoprotein-releasing system ATP-binding protein lolD K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D APL_1369 ccmD; heme exporter protein D K02196 ccmD; heme exporter protein D
D APL_1370 ccmC; heme exporter protein C K02195 ccmC; heme exporter protein C
D APL_1371 ccmB; heme exporter protein B K02194 ccmB; heme exporter protein B
D APL_1372 ccmA; cytochrome c biogenesis ATP-binding export protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5]
D APL_1344 fstX; cell division protein FtsX-like protein K09811 ftsX; cell division transport system permease protein
D APL_1345 fstE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D APL_0263 putative ABC transport system permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D APL_0839 predicted inner membrane transport permease K01992 ABC-2.P; ABC-2 type transport system permease protein
D APL_0264 putative ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D APL_1254 hypothetical protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D APL_1252 hypothetical protein K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D APL_0369 norM; putative multidrug resistance protein NorM K26939 norM; MATE family, multidrug efflux pump
D APL_1688 fucP; L-fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D APL_1309 putative permease K26744 vanK; MFS transporter, AAHS family, vanillate permease
D APL_0159 hcaT; putative 3-phenylpropionic acid transporter K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter
D APL_0377 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D APL_1835 glpT; Glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D APL_1300 hypothetical protein K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
D APL_0355 proP; bicyclomycin resistance-like protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D APL_0582 sotB; putative sugar efflux transporter K08159 sotB; MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein
D APL_1323 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D APL_1322 ptsH; PTS system phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D APL_0345 fruB; multiphosphoryl transfer protein K11183 fruB; multiphosphoryl transfer protein [EC:2.7.1.202]
D APL_1324 crr; glucose-specific phosphotransferase enzyme IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D APL_1319 ptsB; PTS system sucrose-specific EIIBC component K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D APL_0343 fruA; PTS system fructose-specific EIIBC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D APL_1630 mtlA; PTS system mannitol-specific EIICBA component K02800 mtlA; mannitol PTS system EIICBA or EIICB component [EC:2.7.1.197]
D APL_1391 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1662 PTS system mannose-specific EIIAB component K02794 manX; mannose PTS system EIIAB component [EC:2.7.1.191]
D APL_1661 mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1392 ptnC; mannose permease IIC component K02795 manY; mannose PTS system EIIC component
D APL_1393 ptnD; mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1660 mannose permease IID component K02796 manZ; mannose PTS system EIID component
D APL_1699 ulaC; Ascorbate-specific phosphotransferase enzyme IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D APL_1700 ulaA; Predicted ascorbate-specific permease IIC component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APL_1715 sgaB; Phosphotransferase system, galactitol-specific IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D APL_1714 ulaA; ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D APL_0335 ptsN; PTS system, nitrogen regulatory IIA-like protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D APL_0081 dhaM; PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM K05881 dhaM; phosphoenolpyruvate---glycerone phosphotransferase subunit DhaM [EC:2.7.1.121]
D APL_1457 aqpZ; aquaporin Z K06188 aqpZ; aquaporin Z
D APL_0374 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D APL_1524 gst; glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18]
D APL_0658 sspA; stringent starvation protein A-like protein K03599 sspA; stringent starvation protein A
D APL_0274 hypothetical protein K19416 yccA; modulator of FtsH protease
D APL_1037 focA; putative formate transporter K06212 focA; formate transporter
D APL_1902 yrhG; Hypothetical transport protein yrhG K21993 fdhC; formate transporter
D APL_1592 mscL; large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D APL_0750 MscS family protein K05802 mscK; potassium-dependent mechanosensitive channel
D APL_0749 MscS family protein K05802 mscK; potassium-dependent mechanosensitive channel
D APL_1880 mscS; Small-conductance mechanosensitive channel K03442 mscS; small conductance mechanosensitive channel
D APL_1619 utp; urea transport protein ApUT K08717 utp; urea transporter
D APL_0078 exbB2; biopolymer transport protein ExbB2 K03561 exbB; biopolymer transport protein ExbB
D APL_1570 exbB; biopolymer transport ExbB protein K03561 exbB; biopolymer transport protein ExbB
D APL_0077 exbD2; biopolymer transport protein ExbD2 K03559 exbD; biopolymer transport protein ExbD
D APL_1569 exbD; biopolymer transport ExbD protein K03559 exbD; biopolymer transport protein ExbD
D APL_0300 tolQ; colicin transport protein TolQ K03562 tolQ; biopolymer transport protein TolQ
D APL_0301 tolR; biopolymer transport protein TolR K03560 tolR; biopolymer transport protein TolR
D APL_1981 corA; Magnesium transport protein corA K03284 corA; magnesium transporter
D APL_1533 crcB; camphor resistance-like protein CrcB K06199 crcB; fluoride exporter
D APL_1856 hypothetical protein K08363 merT; mercuric ion transport protein
D APL_1857 merP; MerP K08364 merP; periplasmic mercuric ion binding protein
D APL_0228 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D APL_1389 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D APL_1235 lamB1; maltoporin-1 precursor K02024 lamB; maltoporin
D APL_1421 ompA; outer membrane protein P5 precursor K03286 TC.OOP; OmpA-OmpF porin, OOP family
D APL_1852 ompA; Outer membrane protein P5 precursor (OMP P5) K03286 TC.OOP; OmpA-OmpF porin, OOP family
D APL_0933 ompP1; putative outer membrane protein precursor K06076 fadL; long-chain fatty acid transport protein
D APL_1299 predicted TonB dependent/Ligand-Gated channel K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APL_1047 hgbA; hemoglobin-binding protein A precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APL_1567 tbpA; transferrin-binding protein 1 Tbp1 K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APL_0246 truncated transferrin-binding protein 1 precursor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D APL_0276 frpB; iron-regulated outer membrane protein B K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D APL_0919 irp; iron-regulated outer membrane protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D APL_2016 Ferrioxamine B receptor precursor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D APL_0565 cirA; hypothetical ABC transporter ATP-binding protein K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D APL_1582 cpxD; capsule polysaccharide export protein K01991 wza; polysaccharide biosynthesis/export protein
D APL_0411 D15; protective surface antigen D15 precursor K07277 SAM50; outer membrane protein insertion porin family
D APL_1121 putative lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D APL_0428 smpA; small protein A K06186 bamE; outer membrane protein assembly factor BamE
D APL_0829 hypothetical protein K07278 tamA; translocation and assembly module TamA
D APL_0828 hypothetical protein K09800 tamB; translocation and assembly module TamB
D APL_0443 autotransporter adhesin K21449 ata; trimeric autotransporter adhesin
D APL_0104 autotransporter adhesin K21449 ata; trimeric autotransporter adhesin
D APL_0337 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA
D APL_0338 hypothetical protein K11719 lptC; lipopolysaccharide export system protein LptC
D APL_0962 ostA; organic solvent tolerance protein precursor K04744 lptD; LPS-assembly protein
D APL_0873 rlpB; putative rare lipoprotein B K03643 lptE; LPS-assembly lipoprotein
D APL_0956 apxIIA; RTX-II toxin determinant A K11005 hlyA; hemolysin A
D APL_1444 apxIA; RTX-I toxin determinant A K11005 hlyA; hemolysin A
D APL_0372 corC; magnesium and cobalt efflux protein K06189 corC; hemolysin (HlyC) family protein
D APL_0758 hypothetical protein K06518 cidA; holin-like protein
D APL_0780 hypothetical protein K06518 cidA; holin-like protein
D APL_1082 arcD; putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D APL_1083 arcD; putative arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D APL_0604 fieF; cation-efflux pump FieF K13283 fieF; ferrous-iron efflux pump FieF
D APL_0096 zinc transporter family protein ZIP K07238 TC.ZIP; zinc transporter, ZIP family
D APL_0587 acrB; acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APL_1607 putative drug resistance protein K03297 emrE; small multidrug resistance pump
D APL_1946 hypothetical protein K08978 TC.BAT1; bacterial/archaeal transporter family protein
D APL_1044 hypothetical protein K05786 rarD; chloramphenicol-sensitive protein RarD
D APL_1045 hypothetical protein K05786 rarD; chloramphenicol-sensitive protein RarD
D APL_0927 hypothetical protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D APL_0976 hypothetical protein K07084 yuiF; putative amino acid transporter
D APL_1665 gntP_1; gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D APL_0141 hypothetical protein K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D APL_1532 dcuB; anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APL_1316 dcuB2; anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D APL_0447 lctP; putative L-lactate permease K03303 lutP; lactate permease
D APL_1209 betT; putative choline-glycine betaine transporter K02168 betT; choline/glycine/proline betaine transport protein
D APL_1212 tehA; tellurite resistance protein TehA K03304 tehA; tellurite resistance protein
D APL_0478 hypothetical protein K03304 tehA; tellurite resistance protein
D APL_1356 putative sodium/calcium exchange protein K07301 yrbG; cation:H+ antiporter
D APL_1915 panF; Sodium/pantothenate symporter K14392 panF; sodium/pantothenate symporter
D APL_0107 putP; sodium/proline symporter K11928 putP; sodium/proline symporter
D APL_0767 hypothetical symporter K07862 sstT; serine/threonine transporter
D APL_0967 gltS; sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D APL_1947 nhaA; Na(+)/H(+) antiporter 1 (Sodium/proton antiporter 1) K03313 nhaA; Na+:H+ antiporter, NhaA family
D APL_0322 nhaB; Na(+)/H(+) antiporter 2 K03314 nhaB; Na+:H+ antiporter, NhaB family
D APL_0449 putative integral membrane protein K18218 tet35; tetracycline resistance efflux pump
D APL_1004 nhaP; Na(+)/H(+) exchanger beta-like protein K03316 nhaP; Na+:H+ antiporter
D APL_1053 kefBC; glutathione-regulated potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D APL_1181 kefB; glutathione-regulated potassium-efflux system protein K11747 kefB; glutathione-regulated potassium-efflux system protein KefB
D APL_1590 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D APL_1559 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D APL_0105 uraA; putative uracil permease K02824 uraA; uracil permease
D APL_1223 putative inner membrane protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D APL_1071 hypothetical protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D APL_0596 tyrP-A; tyrosine-specific transport protein 1 K03834 tyrP; tyrosine-specific transport protein
D APL_0597 tyrP-B; tyrosine-specific transport protein 2 K03834 tyrP; tyrosine-specific transport protein
D APL_1410 tnaB; tTryptophan-specific transport protein K03835 mtr; tryptophan-specific transport protein
D APL_0856 sdaC; serine transporter K03837 sdaC; serine transporter
D APL_0674 hypothetical protein K03281 clcA; chloride channel protein, CIC family
D APL_1088 hypothetical protein K03325 ACR3; arsenite transporter
D APL_0870 putative C4-dicarboxylate transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D APL_1548 hypothetical protein K16693 wzxE; enterobacterial common antigen flippase
D APL_1557 mviN; virulence factor-like MviN K03980 murJ; putative peptidoglycan lipid II flippase
D APL_0325 hypothetical protein K13936 mdcF; malonate transporter and related proteins
D APL_0890 hypothetical protein K24180 mleP; malate permease and related proteins
D APL_0833 hypothetical protein K06895 lysE; L-lysine exporter family protein LysE/ArgO
D APL_0204 putative threonine efflux protein K05835 rhtC; threonine efflux protein
D APL_1248 AzlC family protein K26605 azlC; branched chain amino acid efflux pump
D APL_1247 hypothetical protein K26606 azlD; branched chain amino acid efflux pump
D APL_0763 perM; putative permease perM-like protein K03548 perM; putative permease
D APL_2029 Hypothetical protein K09125 yhhQ; queuosine precursor transporter
D APL_1199 hypothetical protein K05595 marC; multiple antibiotic resistance protein
D APL_1002 putative membrane protein K05595 marC; multiple antibiotic resistance protein
D APL_0017 ftsW; cell division protein FtsW K03588 ftsW; cell division protein FtsW
D APL_0668 hypothetical protein K07224 efeO; iron uptake system component EfeO
D APL_0669 putative iron dependent peroxidase K16301 efeB; deferrochelatase/peroxidase EfeB [EC:1.11.1.-]
D APL_0527 predicted ABC-type transport system, permease component K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D APL_0076 tonB2; protein TonB2 K03832 tonB; periplasmic protein TonB
D APL_1571 tonB1; periplasmic protein K03832 tonB; periplasmic protein TonB
D APL_0304 palA; outer membrane protein precursor PalA K03640 pal; peptidoglycan-associated lipoprotein
D APL_0302 tolA; cell envelope integrity inner membrane protein TolA K03646 tolA; colicin import membrane protein
D APL_0303 tolB; translocation protein TolB precursor K03641 tolB; TolB protein
D APL_1377 oadB; oxaloacetate decarboxylase beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D APL_1376 oadA; oxaloacetate decarboxylase alpha chain K01571 oadA; oxaloacetate decarboxylase (Na+ extruding) subunit alpha [EC:7.2.4.2]
D APL_1375 oadG; oxaloacetate decarboxylase gamma chain K01573 oadG; oxaloacetate decarboxylase (Na+ extruding) subunit gamma
D APL_1674 dmsA; anaerobic dimethyl sulfoxide reductase chain A precursor K07306 dmsA; anaerobic dimethyl sulfoxide reductase subunit A [EC:1.8.5.3]
D APL_1675 dmsB; anaerobic dimethyl sulfoxide reductase chain B K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D APL_1676 dmsC; anaerobic dimethyl sulfoxide reductase chain C K07308 dmsC; anaerobic dimethyl sulfoxide reductase subunit C
D APL_1798 torA; Trimethylamine-N-oxide reductase precursor K07811 torA; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APL_1799 torC; pentahemic c-type cytochrome K03532 torC; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorC
D APL_1797 torD; chaperone protein TorD K03533 torD; TorA specific chaperone
D APL_0689 torY; cytochrome c-type protein TorY K07821 torY; trimethylamine-N-oxide reductase (cytochrome c), cytochrome c-type subunit TorY
D APL_0688 torZ; trimethylamine-N-oxide reductase precursor K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D APL_1442 apxID; RTX-I toxin secretion component K11003 hlyD; membrane fusion protein, hemolysin D
D APL_0586 putative RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APL_1814 macA; probable macrolide-specific efflux protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D APL_0391 macA; probable macrolide-specific efflux protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D APL_1173 pnuC; nicotinamide mononucleotide transporter K03811 pnuC; nicotinamide mononucleotide transporter
D APL_1367 ccmF; cytochrome c-type biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF
D APL_0818 transthyretin-like periplasmic protein K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
D APL_1815 hypothetical protein K07274 mipA; MipA family protein
C 02044 Secretion system [BR:apl02044]
D APL_1443 apxIB; toxin RTX-I translocation ATP-binding protein K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D APL_1442 apxID; RTX-I toxin secretion component K11003 hlyD; membrane fusion protein, hemolysin D
D APL_1273 putative fimbrial biogenesis and twitching motility protein PilF-like protein K02656 pilF; type IV pilus assembly protein PilF
D APL_0557 tadV; flp operon protein B K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D APL_0556 rcpC; flp operon protein C K02279 cpaB; pilus assembly protein CpaB
D APL_0555 rcpA; rough colony protein A K02280 cpaC; pilus assembly protein CpaC
D APL_0554 rcpB; rough colony protein B K12509 rcpB; pilus assembly protein RcpB
D APL_0553 tadZ; flp operon protein D K02282 cpaE; pilus assembly protein CpaE
D APL_0552 tadA; tight adherence protein A K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D APL_0551 tadB; tight adherence protein B K12510 tadB; tight adherence protein B
D APL_0550 tadC; tight adherence protein C K12511 tadC; tight adherence protein C
D APL_0549 tadD; tight adherence protein D K12512 tadD; tight adherence protein D
D APL_0548 tadE; tight adherence protein E K12513 tadE; tight adherence protein E
D APL_0547 tadF; tight adherence protein F K12514 tadF; tight adherence protein F
D APL_0546 tadG; tight adherence protein G K12515 tadG; tight adherence protein G
D APL_0558 flp2; minor fimbrial protein K02651 flp; pilus assembly protein Flp/PilA
D APL_0559 flp1; fimbrial protein Flp precursor K02651 flp; pilus assembly protein Flp/PilA
D APL_1888 pulG; hypothetical protein K02679 ppdA; prepilin peptidase dependent protein A
D APL_1887 pulJ; hypothetical protein K02680 ppdB; prepilin peptidase dependent protein B
D APL_1885 hypothetical protein K02681 ppdC; prepilin peptidase dependent protein C
D APL_0880 apfA; type 4 prepilin subunit ApfA precursor K02682 ppdD; prepilin peptidase dependent protein D
D APL_0879 apfB; fimbrial biogenesis protein K02504 hofB; protein transport protein HofB
D APL_0878 apfC; fimbrial biogenesis protein K02505 hofC; protein transport protein HofC
D APL_0200 hofQ; type II secretory pathway, component HofQ K02507 hofQ; protein transport protein HofQ
D APL_1381 hypothetical protein K02221 yggT; YggT family protein
D APL_1406 comEA; DNA uptake protein K02237 comEA; competence protein ComEA
D APL_0766 rec2; recombination protein 2 K02238 comEC; competence protein ComEC
D APL_0458 dsbC; thiol:disulfide interchange protein DsbC precursor K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D APL_0239 secA; preprotein translocase secA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D APL_1509 secB; protein-export protein SecB K03071 secB; preprotein translocase subunit SecB
D APL_1067 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D APL_1716 secE; preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D APL_1068 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D APL_0743 secG; protein-export membrane protein K03075 secG; preprotein translocase subunit SecG
D APL_1779 secY; Preprotein translocase secY subunit K03076 secY; preprotein translocase subunit SecY
D APL_1742 srp54; signal recognition particle protein (sigma-54 like protein) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D APL_1346 ftsY; cell division protein FtsY-like protein K03110 ftsY; fused signal recognition particle receptor
D APL_1066 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D APL_1424 oxaA; inner membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase
D APL_1985 tatA; twin argininte translocase protein A K03116 tatA; sec-independent protein translocase protein TatA
D APL_1986 tatB; sec-independent protein translocase-like protein TatB K03117 tatB; sec-independent protein translocase protein TatB
D APL_1987 tatC; Sec-independent protein translocase protein tatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:apl02042]
D APL_0956 apxIIA; RTX-II toxin determinant A K11005 hlyA; hemolysin A
D APL_1444 apxIA; RTX-I toxin determinant A K11005 hlyA; hemolysin A
D APL_0228 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D APL_1389 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:apl02022]
D APL_1256 phoR; phosphate regulon sensor protein PhoR K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D APL_1257 phoB; phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB
D APL_0627 two-component sensor protein K07640 cpxA; two-component system, OmpR family, sensor histidine kinase CpxA [EC:2.7.13.3]
D APL_0629 cpxR; transcriptional regulatory protein CpxR K07662 cpxR; two-component system, OmpR family, response regulator CpxR
D APL_1064 qseC; sensor protein QseC K07645 qseC; two-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]
D APL_1063 qseB; transcriptional regulatory protein QseB K07666 qseB; two-component system, OmpR family, response regulator QseB
D APL_0935 aerobic respiration control sensor protein K07648 arcB; two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB [EC:2.7.13.3]
D APL_0048 arcA; aerobic respiration control protein ArcA K07773 arcA; two-component system, OmpR family, aerobic respiration control protein ArcA
D APL_0462 narQ; sensor protein NarQ-like protein K07674 narQ; two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarQ [EC:2.7.13.3]
D APL_0059 narP; nitrate/nitrite response regulator protein K07685 narP; two-component system, NarL family, nitrate/nitrite response regulator NarP
C 02035 Bacterial motility proteins [BR:apl02035]
D APL_1657 putative amino-acid ABC transporter-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D APL_1273 putative fimbrial biogenesis and twitching motility protein PilF-like protein K02656 pilF; type IV pilus assembly protein PilF
D APL_0558 flp2; minor fimbrial protein K02651 flp; pilus assembly protein Flp/PilA
D APL_0559 flp1; fimbrial protein Flp precursor K02651 flp; pilus assembly protein Flp/PilA
D APL_0557 tadV; flp operon protein B K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43]
D APL_0556 rcpC; flp operon protein C K02279 cpaB; pilus assembly protein CpaB
D APL_0555 rcpA; rough colony protein A K02280 cpaC; pilus assembly protein CpaC
D APL_0553 tadZ; flp operon protein D K02282 cpaE; pilus assembly protein CpaE
D APL_0552 tadA; tight adherence protein A K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:apl04812]
D APL_0435 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D APL_0023 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D APL_0022 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
C 04147 Exosome [BR:apl04147]
D APL_0987 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D APL_1113 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D APL_0434 gapA; glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D APL_1251 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D APL_0187 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D APL_1012 groEL; 60 kDa chaperonin K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D APL_1906 dnaK; Chaperone protein dnaK K04043 dnaK; molecular chaperone DnaK
D APL_1137 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D APL_1565 putative gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17]
D APL_0593 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D APL_1398 tufB; elongation factor Tu K02358 tuf; elongation factor Tu
D APL_1512 tufB; elongation factor Tu K02358 tuf; elongation factor Tu
D APL_0126 HIT-like protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D APL_1413 putative long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_0397 lcfA; long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D APL_1298 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D APL_0266 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D APL_1179 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D APL_0422 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D APL_1450 fbp; fructose-1,6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D APL_0995 galK; galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D APL_0346 glgB; 1,4-alpha-glucan branching enzyme K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D APL_0375 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D APL_1941 glnA; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D APL_1988 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D APL_1452 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D APL_0958 purH; bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D APL_0771 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D APL_1311 zwf; glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D APL_1925 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D APL_0832 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:apl02048]
D APL_0214 hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D APL_0213 hypothetical protein K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D APL_0218 hypothetical protein K19127 csy1; CRISPR-associated protein Csy1
D APL_0217 hypothetical protein K19128 csy2; CRISPR-associated protein Csy2
D APL_0216 hypothetical protein K19129 csy3; CRISPR-associated protein Csy3
D APL_0215 hypothetical protein K19130 csy4; CRISPR-associated endonuclease Csy4 [EC:3.1.-.-]
D APL_0293 putative type I site-specific restriction-modification system, R (restriction) subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D APL_0636 hsdR3; putative type I site-specific restriction-modification system, restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D APL_1196 type I restriction enzyme, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D APL_0634 hsdS3; putative type I restriction system specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D APL_0290 putative Type I restriction enzyme EcoR124II specificity protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D APL_1193 putative type I restriction-modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D APL_0633 hsdM3; putative type I modification enzyme K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D APL_1194 type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D APL_0192 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_0495 putative DNA-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D APL_1202 modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D APL_0812 res; type III restriction enzyme K01156 res; type III restriction enzyme [EC:3.1.21.5]
D APL_0813 mod; type III restriction-modification system methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APL_0705 putative methylation subunit, type III restriction-modification system K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D APL_1276 hypothetical protein K19159 yefM; antitoxin YefM
D APL_1680 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APL_1723 hypothetical protein K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D APL_1731 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APL_0665 hypothetical protein K18828 mvpA; tRNA(fMet)-specific endonuclease VapC [EC:3.1.-.-]
D APL_0666 hypothetical protein K18829 mvpT; antitoxin VapB
D APL_1730 hypothetical protein K18829 mvpT; antitoxin VapB
D APL_1206 plasmid stability-like protein K07062 fitB; toxin FitB [EC:3.1.-.-]
D APL_0023 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D APL_0435 mreB; rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D APL_0578 parC; DNA topoisomerase 4 subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D APL_1255 parE; DNA topoisomerase 4 subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D APL_1275 gltX; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D APL_1521 hypothetical protein K09159 cptB; antitoxin CptB
D APL_0931 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:apl04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:apl04090]
C 01504 Antimicrobial resistance genes [BR:apl01504]
D APL_0449 putative integral membrane protein K18218 tet35; tetracycline resistance efflux pump
D APL_0586 putative RND efflux membrane fusion protein K03585 acrA; membrane fusion protein, multidrug efflux system
D APL_0587 acrB; acriflavine resistance protein K18138 acrB; multidrug efflux pump
D APL_1262 transcriptional regulator MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D APL_0697 putative HTH-type transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:apl00536]
D APL_0959 hemagglutinin/hemolysin-like protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:apl03100]
D APL_2057 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2048 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2083 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2071 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D APL_2105 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2072 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2085 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2086 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D APL_2051 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APL_2061 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APL_2063 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D APL_2076 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APL_2094 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APL_2093 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D APL_2107 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D APL_2101 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APL_2103 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APL_2102 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D APL_2050 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APL_2075 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APL_2064 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D APL_2080 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2087 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2089 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2092 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2106 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D APL_2073 tRNA-His K14226 tRNA-His; tRNA His
D APL_2047 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APL_2070 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APL_2082 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D APL_2100 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2108 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2056 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2088 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2090 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2091 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D APL_2067 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APL_2069 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APL_2068 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D APL_2052 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2099 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2053 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2055 tRNA-Met K14230 tRNA-Met; tRNA Met
D APL_2060 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APL_2062 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D APL_2074 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APL_2104 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D APL_2084 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2065 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2066 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2049 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D APL_2081 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APL_2058 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APL_2078 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D APL_2077 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D APL_2079 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D APL_2095 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2096 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2098 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2097 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2054 tRNA-Val K14237 tRNA-Val; tRNA Val
D APL_2059 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D APL_2111 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2113 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2109 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2110 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2114 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2112 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D APL_2118 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2119 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2117 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2120 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2116 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2115 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D APL_2121 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2122 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2123 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2126 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2125 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D APL_2124 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D APL_1191 namA; NADPH dehydrogenase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D APL_1024 peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D APL_0433 msrB; methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D APL_1205 putative glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-]
D APL_1832 hypothetical protein K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D APL_1379 ccp; cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D APL_0846 bcp; putative peroxiredoxin Bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D APL_1489 tpx; putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D APL_1162 hypothetical protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D APL_1493 hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D APL_1069 ftnA; ferritin-like protein 1 K02217 ftnA; ferritin [EC:1.16.3.2]
D APL_1070 ftnB; ferritin-like protein 2 K02217 ftnA; ferritin [EC:1.16.3.2]
D APL_1089 arsC; arsenate reductase K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1]
D APL_0164 hypothetical protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D APL_1035 pflA; pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D APL_1547 hcr; NADH oxidoreductase K11933 hcr; NADH oxidoreductase Hcr [EC:1.-.-.-]
D APL_1350 tehB; tellurite resistance protein TehB-like protein K16868 tehB; tellurite methyltransferase [EC:2.1.1.265]
D APL_1523 chuW; coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D APL_0371 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D APL_1895 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D APL_0156 apbE; thiamine biosynthesis lipoprotein ApbE precursor K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D APL_0969 glnE; glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D APL_0299 hypothetical protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D APL_0671 trpH; TrpH-like protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D APL_0188 sixA; possible phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D APL_0278 putative Mg-dependent deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D APL_1810 Putative Mg-dependent DNAse K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D APL_1242 putative deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D APL_1126 putative micrococcal nuclease (thermonuclease)-like protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D APL_0753 putative esterase/lipase K01175 ybfF; esterase [EC:3.1.-.-]
D APL_0505 putative endolysin K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D APL_1711 def; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D APL_1141 hypothetical protein K09900 E3.5.1.135; N4-acetylcytidine amidohydrolase [EC:3.5.1.135]
D APL_0430 hypothetical protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D APL_0268 putative translation initiation inhibitor K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D APL_0865 aape0934; hypothetical protein K18446 ygiF; triphosphatase [EC:3.6.1.25]
D APL_1574 hypothetical protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D APL_1125 putative cysteine desulfurase K01766 csdA; cysteine sulfinate desulfinase [EC:4.4.1.-]
D APL_1686 fucU; fucose operon FucU protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29]
D APL_1449 mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase K02558 mpl; UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.45]
D APL_0169 rnfD; electron transport complex protein RnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D APL_0167 rnfC; electron transport complex protein RnfC K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D APL_0166 rnfB; electron transport complex protein RnfB K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D APL_0150 nqrA; Na(+)-translocating NADH-quinone reductase subunit A K00346 nqrA; Na+-transporting NADH:ubiquinone oxidoreductase subunit A [EC:7.2.1.1]
D APL_0151 nqrB; Na(+)-translocating NADH-quinone reductase subunit B K00347 nqrB; Na+-transporting NADH:ubiquinone oxidoreductase subunit B [EC:7.2.1.1]
D APL_0152 nqrC; Na(+)-translocating NADH-quinone reductase subunit C K00348 nqrC; Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1]
D APL_0153 nqrD; Na(+)-translocating NADH-quinone reductase subunit D K00349 nqrD; Na+-transporting NADH:ubiquinone oxidoreductase subunit D [EC:7.2.1.1]
D APL_0154 nqrE; Na(+)-translocating NADH-quinone reductase subunit E K00350 nqrE; Na+-transporting NADH:ubiquinone oxidoreductase subunit E [EC:7.2.1.1]
D APL_0155 nqrF; Na(+)-translocating NADH-quinone reductase subunit F K00351 nqrF; Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:7.2.1.1]
C 99981 Carbohydrate metabolism
D APL_1737 sfsA; sugar fermentation stimulation-like protein K06206 sfsA; sugar fermentation stimulation protein A
D APL_0446 ykgE; putative dehydrogenase subunit K18928 lldE; L-lactate dehydrogenase complex protein LldE
D APL_0445 ykgF; putative electron transport protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D APL_0444 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D APL_0891 fdhD; formate dehydrogenase accessory protein-like protein K02379 fdhD; FdhD protein
D APL_0924 fdx; 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S
D APL_0170 rnfG; electron transport complex protein RnfG K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D APL_0171 rnfE; electron transport complex protein RnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D APL_0165 rnfA; electron transport complex protein RnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D APL_1563 mioC; flavodoxin K06205 mioC; MioC protein
D APL_0930 nifU; NifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D APL_1129 hypothetical protein K15536 cybC; soluble cytochrome b562
D APL_1430 napD; putative napD protein K02570 napD; periplasmic nitrate reductase NapD
D APL_1431 napF; ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF
D APL_1052 nrfE; cytochrome c-type biogenesis protein NrfE K04016 nrfE; cytochrome c-type biogenesis protein NrfE
D APL_1219 fldA; flavodoxin K03839 fldA; flavodoxin I
D APL_1425 napC; cytochrome c-type protein NapC K02569 napC; cytochrome c-type protein NapC
D APL_1428 napG; ferredoxin-type protein napG-like protein K02573 napG; ferredoxin-type protein NapG
D APL_1427 napH; ferredoxin-type protein NapH-like protein K02574 napH; ferredoxin-type protein NapH
D APL_0101 nrfB; cytochrome c-type protein NrfB precursor K04013 nrfB; cytochrome c-type protein NrfB
D APL_0102 nrfC; nitrate reductase K04014 nrfC; protein NrfC
D APL_0103 nrfD; nitrite reductase transmembrane protein K04015 nrfD; protein NrfD
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D APL_1304 cysZ; putative sulfate transport protein CysZ K06203 cysZ; CysZ protein
D APL_1738 lactoylglutathione lyase and related lyases K08234 yaeR; glyoxylase I family protein
D APL_0052 hypothetical protein K06997 yggS; PLP dependent protein
D APL_1605 hypothetical protein K26607 cyuA; putative L-cysteine desulfidase
C 99986 Glycan metabolism
D APL_0738 hypothetical protein K08992 lapA; lipopolysaccharide assembly protein A
D APL_0737 hypothetical protein K19804 lapB; lipopolysaccharide assembly protein B
D APL_0980 lbgA; putative LPS biosynthesis protein K07270 K07270; glycosyl transferase, family 25
D APL_1028 putative glycosyltransferase K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D APL_1007 hemY; HemY-like protein K02498 hemY; HemY protein
D APL_1984 ubiB; Probable ubiquinone biosynthesis protein ubiB K03688 ubiB; ubiquinone biosynthesis protein
D APL_1983 hypothetical protein K03690 ubiJ; ubiquinone biosynthesis accessory factor UbiJ
D APL_1138 hypothetical protein K09806 ubiK; ubiquinone biosynthesis accessory factor UbiK
C 99988 Secondary metabolism
D APL_1487 sufI; protein SufI precursor K04753 sufI; suppressor of ftsI
D APL_1997 Hypothetical protein - predicted flavoprotein K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D APL_1998 Hypothetical protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D APL_0725 cspD; cold shock-like protein CspD K03704 cspA; cold shock protein
D APL_0118 cspC; cold shock-like protein CspC K03704 cspA; cold shock protein
D APL_1272 predicted transcriptional accessory protein K06959 tex; protein Tex
C 99974 Translation
D APL_0838 hypothetical ABC transporter ATP-binding protein K13926 rbbA; ribosome-dependent ATPase
C 99975 Protein processing
D APL_1507 tig; trigger factor K03545 tig; trigger factor
D APL_1833 hypothetical protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D APL_0896 fdhE; formate dehydrogenase accessory protein K02380 fdhE; FdhE protein
D APL_1614 ureE; urease accessory protein UreE K03187 ureE; urease accessory protein
D APL_1613 ureF; urease accessory protein UreF K03188 ureF; urease accessory protein
D APL_1612 ureG; urease accessory protein UreG K03189 ureG; urease accessory protein
D APL_1611 ureD; urease accessory protein UreD K03190 ureD; urease accessory protein
D APL_0867 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D APL_1337 hybG; hydrogenase-2 operon protein HybG K04653 hypC; hydrogenase expression/formation protein HypC
D APL_1328 hypD; hydrogenase isoenzymes formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D APL_1329 hypE; hydrogenase isoenzymes formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D APL_1330 hypF; carbamoyltransferase HypF K04656 hypF; hydrogenase maturation protein HypF
D APL_1747 comM; Competence protein comM K07391 comM; magnesium chelatase family protein
D APL_0149 hypothetical protein K07400 nfuA; Fe/S biogenesis protein NfuA
C 99976 Replication and repair
D APL_1970 radC; DNA repair protein RadC-like protein K03630 radC; DNA repair protein RadC
D APL_1146 rmuC; DNA recombination protein RmuC-like protein K09760 rmuC; DNA recombination protein RmuC
D APL_0144 predicted ATP-dependent endonuclease of the OLD family K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D APL_1363 hypothetical protein K07460 yraN; putative endonuclease
D APL_1712 smf; Protein smf (DNA-processing chain A) K04096 smf; DNA processing protein
D APL_0438 hypothetical protein K07478 ycaJ; putative ATPase
D APL_2022 Transposase IS200-like protein K07491 rayT; REP-associated tyrosine transposase
C 99979 Viral proteins
C 99998 Others
D APL_1285 hypothetical protein K03972 pspE; phage shock protein E
D APL_0075 ybaB; uncharacterized protein YbaB K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D APL_0719 putative phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D APL_0191 predicted Na+-dependent transporters of the SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D APL_1390 hypothetical sodium-dependent transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D APL_0528 putative transporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D APL_1127 predicted Na+/alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D APL_1991 brnQ; Branched-chain amino acid transport system carrier protein braB (Branched-chain amino acid uptake carrier braB) K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D APL_0390 hypothetical protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D APL_1016 putative nucleoside transporter K03317 TC.CNT; concentrative nucleoside transporter, CNT family
D APL_0966 putative transport protein K07085 K07085; putative transport protein
C 99978 Cell growth
D APL_0972 ispZ; putative intracellular septation protein K06190 ispZ; intracellular septation protein
D APL_1606 regulator of cell morphogenesis and NO signaling K07322 ytfE; regulator of cell morphogenesis and NO signaling
D APL_0831 predicted membrane-bound metallopeptidase K22719 envC; murein hydrolase activator
C 99993 Cell motility
D APL_1758 possible DNA transformation protein K07343 tfoX; DNA transformation protein and related proteins
C 99995 Signaling proteins
D APL_0119 proQ; proQ-like protein K03607 proQ; ProP effector
D APL_0655 uspA; universal stress protein A-like protein K06149 uspA; universal stress protein A
D APL_0053 typA; GTP-binding protein K06207 typA; GTP-binding protein
D APL_1492 hypothetical protein K07166 K07166; ACT domain-containing protein
D APL_0324 phoH; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D APL_0720 hypothetical protein K07184 ygiM; SH3 domain protein
D APL_1229 aphA; AphA-like protein K07186 smp; membrane protein
D APL_1231 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D APL_0474 lolA; outer-membrane lipoprotein carrier protein precursor K03634 lolA; outer membrane lipoprotein carrier protein
D APL_0777 lolB; outer-membrane lipoprotein LolB precursor K02494 lolB; outer membrane lipoprotein LolB
D APL_1918 vacJ; lipoprotein VacJ-like protein precursor K04754 mlaA; phospholipid-binding lipoprotein MlaA
D APL_1553 hypothetical protein K05790 wzzE; lipopolysaccharide biosynthesis protein WzzE
D APL_0037 slyB; outer membrane lipoprotein K06077 slyB; outer membrane lipoprotein SlyB
D APL_1930 Outer membrane antigenic lipoprotein B precursor K06194 nlpD; lipoprotein NlpD
D APL_0576 nlpI; lipoprotein NlpI-like precursor K05803 nlpI; lipoprotein NlpI
D APL_1696 hcsB; capsule polysaccharide modification protein HcsB K07265 kpsS; capsular polysaccharide export protein
D APL_1695 kpsC; capsule polysaccharide modification protein LipA K07266 kpsC; capsular polysaccharide export protein
D APL_1405 oapA; opacity associated protein A K07268 oapA; opacity associated protein
D APL_1086 ompW; outer membrane protein W precursor K07275 ompW; outer membrane protein
D APL_2002 Hypothetical protein K07280 K07280; outer membrane protein
D APL_0234 putative lipoprotein K07286 yajG; uncharacterized lipoprotein
D APL_0837 hypothetical protein K01993 ABC-2.TX; HlyD family secretion protein
D APL_1128 membrane protein K11744 tqsA; AI-2 transport protein TqsA
D APL_1633 hypothetical protein K04062 osmB; osmotically inducible lipoprotein OsmB
D APL_1368 ccmE; cytochrome c-type biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE
D APL_1515 hypothetical protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D APL_1516 cytochrome c biogenesis factor-like protein K02200 ccmH; cytochrome c-type biogenesis protein CcmH
D APL_1177 hypothetical protein K15539 rodZ; cytoskeleton protein RodZ
C 99994 Others
D APL_1117 cyaY; frataxin-like protein K06202 cyaY; iron-sulfur cluster assembly protein CyaY
D APL_1224 hypothetical protein K06039 ychN; uncharacterized protein involved in oxidation of intracellular sulfur
B
B 09194 Poorly characterized
C 99996 General function prediction only
D APL_0424 cvpA; colicin V production protein K03558 cvpA; membrane protein required for colicin V production
D APL_1504 putative acetyltransferase K02348 elaA; ElaA protein
D APL_0361 grcA; autonomous glycyl radical cofactor K06866 grcA; autonomous glycyl radical cofactor
D APL_1496 hypothetical protein K07001 K07001; NTE family protein
D APL_1462 hypothetical protein K15724 erpA; iron-sulfur cluster insertion protein
D APL_1950 rbn; tRNA-processing ribonuclease BN (RNase BN) K07058 K07058; membrane protein
D APL_0090 hypothetical protein K07113 fxsA; UPF0716 protein FxsA
D APL_1281 hypothetical protein K02426 sufE; cysteine desulfuration protein SufE
D APL_0825 hypothetical protein K07153 hflD; high frequency lysogenization protein
D APL_0342 hypothetical protein K03744 lemA; LemA protein
D APL_1639 slyX; SlyX-like protein K03745 slyX; SlyX protein
D APL_1270 sprT; putative SprT-like protein K02742 sprT; SprT protein
D APL_0442 sanA; SanA protein K03748 sanA; SanA protein
D APL_1854 pqiA; hypothetical protein K03808 pqiA; paraquat-inducible protein A
D APL_0308 hypothetical membrane protein K08990 ycjF; putative membrane protein
D APL_1690 inner membrane protein K08996 yagU; putative membrane protein
D APL_1658 hypothetical protein K09858 K09858; SEC-C motif domain protein
D APL_1234 hypothetical protein K05775 malM; maltose operon periplasmic protein
D APL_1944 Predicted membrane protein K13256 psiE; protein PsiE
D APL_0069 psiE; phosphate-starvation-inducible protein PsiE K13256 psiE; protein PsiE
D APL_1378 phnA; alkylphosphonate uptake protein K06193 phnA; protein PhnA
C 99997 Function unknown
D APL_0340 hypothetical protein K06872 K06872; uncharacterized protein
D APL_0907 hypothetical protein K06889 K06889; uncharacterized protein
D APL_0866 hypothetical protein K06918 K06918; uncharacterized protein
D APL_0606 hypothetical symporter K06956 K06956; uncharacterized protein
D APL_0946 hypothetical protein K06975 K06975; uncharacterized protein
D APL_0583 hypothetical protein K07014 K07014; uncharacterized protein
D APL_2012 Hypothetical protein K07034 K07034; uncharacterized protein
D APL_0619 hypothetical protein K07054 K07054; uncharacterized protein
D APL_1294 hypothetical protein K07071 K07071; uncharacterized protein
D APL_1588 predicted TRAP transporter solute receptor K07080 K07080; uncharacterized protein
D APL_0885 hypothetical protein K07090 K07090; uncharacterized protein
D APL_1896 hypothetical protein K07090 K07090; uncharacterized protein
D APL_0991 hypothetical protein K07098 K07098; uncharacterized protein
D APL_1065 hypothetical protein K07109 K07109; uncharacterized protein
D APL_2046 hypothetical protein K07112 K07112; uncharacterized protein
D APL_1977 yedE; hypothetical protein K07112 K07112; uncharacterized protein
D APL_1362 hypothetical protein K07121 K07121; uncharacterized protein
D APL_1182 hypothetical protein K07133 K07133; uncharacterized protein
D APL_0787 putative ATPase K07133 K07133; uncharacterized protein
D APL_0664 hypothetical protein K07133 K07133; uncharacterized protein
D APL_0805 hypothetical protein K07140 K07140; MOSC domain-containing protein
D APL_1017 hypothetical protein K07149 K07149; uncharacterized protein
D APL_0733 hypothetical protein K07150 K07150; uncharacterized protein
D APL_1940 hypothetical protein K08998 K08998; uncharacterized protein
D APL_1380 hypothetical protein K09131 K09131; uncharacterized protein
D APL_1491 hypothetical protein K09157 K09157; uncharacterized protein
D APL_1595 hypothetical protein K09158 K09158; uncharacterized protein
D APL_0467 hypothetical protein K09160 K09160; uncharacterized protein
D APL_0970 hypothetical protein K09780 K09780; uncharacterized protein
D APL_1006 hypothetical protein K09781 K09781; uncharacterized protein
D APL_1806 hypothetical protein K09790 K09790; uncharacterized protein
D APL_1277 hypothetical protein K09791 K09791; uncharacterized protein
D APL_1168 hypothetical protein K09794 K09794; uncharacterized protein
D APL_0830 hypothetical protein K09798 K09798; uncharacterized protein
D APL_0258 hypothetical protein K09801 K09801; uncharacterized protein
D APL_0709 hypothetical protein K09802 K09802; uncharacterized protein
D APL_0453 hypothetical protein K09824 virK; uncharacterized protein
D APL_0363 hypothetical protein K09824 virK; uncharacterized protein
D APL_0157 hypothetical protein K05952 K05952; uncharacterized protein
D APL_0602 hypothetical protein K09861 K09861; uncharacterized protein
D APL_0875 yacG; putative zinc-binding protein K09862 K09862; uncharacterized protein
D APL_0113 hypothetical protein K09891 K09891; uncharacterized protein
D APL_0965 hypothetical protein K09894 K09894; uncharacterized protein
D APL_0111 hypothetical protein K09895 K09895; uncharacterized protein
D APL_1867 hypothetical protein K09896 K09896; uncharacterized protein
D APL_1978 hypothetical protein K09897 K09897; uncharacterized protein
D APL_1966 hypothetical protein K09898 K09898; uncharacterized protein
D APL_0974 hypothetical protein K09899 K09899; uncharacterized protein
D APL_1348 hypothetical protein K09901 K09901; uncharacterized protein
D APL_0712 hypothetical protein K09902 K09902; uncharacterized protein
D APL_0584 hypothetical protein K09904 K09904; uncharacterized protein
D APL_0038 hypothetical protein K09907 K09907; uncharacterized protein
D APL_0599 hypothetical protein K09908 K09908; uncharacterized protein
D APL_0373 hypothetical protein K09909 K09909; uncharacterized protein
D APL_0968 hypothetical protein K09910 K09910; uncharacterized protein
D APL_1891 hypothetical protein K09911 K09911; uncharacterized protein
D APL_0863 hypothetical protein K09917 K09917; uncharacterized protein
D APL_0808 hypothetical protein K09922 K09922; uncharacterized protein
D APL_1382 hypothetical protein K09923 K09923; uncharacterized protein
D APL_0332 hlpB; lipoprotein HlpB K09924 K09924; uncharacterized protein
D APL_0643 hypothetical protein K09946 K09946; uncharacterized protein
D APL_1802 hypothetical protein K09968 K09968; uncharacterized protein
D APL_0734 hypothetical protein K09979 K09979; uncharacterized protein
D APL_0718 hypothetical protein K07220 K07220; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 9, 2024