+F Repair protein KO
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DNA Repair and Recombination Proteins - Arabidopsis thaliana (thale cress)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AT2G22260 ALKBH2; oxidoreductase, 2OG-Fe(II) oxygenase family protein K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D AT5G61140 U5 small nuclear ribonucleoprotein helicase K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D AT1G12370 PHR1; photolyase 1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AT3G18630 UNG; uracil dna glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AT3G12040 DNA-3-methyladenine glycosylase (MAG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E AT4G12740 HhH-GPD base excision DNA repair family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AT3G07930 DNA glycosylase superfamily protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E AT1G21710 OGG1; 8-oxoguanine-DNA glycosylase 1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E AT5G13920 GRF zinc finger / Zinc knuckle protein K10569 NEIL3; endonuclease VIII-like 3 [EC:3.2.2.- 4.2.99.18]
E AT2G31450 ATNTH1; DNA glycosylase superfamily protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AT1G05900 NTH2; endonuclease III 2 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AT3G47830 DNA glycosylase superfamily protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AT4G36050 endonuclease/exonuclease/phosphatase family protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F AT5G63960 DNA polymerase delta subunit 1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F AT2G42120 POLD2; DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
F AT1G78650 POLD3; DNA-directed DNA polymerase K03504 POLD3; DNA polymerase delta subunit 3
F AT1G09815 POLD4; polymerase delta 4 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F AT1G08260 TIL1; DNA polymerase epsilon catalytic subunit K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F AT2G27120 TIL2; DNA polymerase epsilon catalytic subunit K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F AT5G22110 DPB2; DNA polymerase epsilon subunit B2 K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F AT2G27470 NF-YB11; nuclear factor Y, subunit B11 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E AT2G29570 PCNA2; proliferating cell nuclear antigen 2 K04802 PCNA; proliferating cell nuclear antigen
E AT1G07370 PCNA1; proliferating cellular nuclear antigen 1 K04802 PCNA; proliferating cell nuclear antigen
E AT5G26680 5'-3' exonuclease family protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E AT1G08130 LIG1; DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E AT1G80420 ATXRCC1; BRCT domain-containing DNA repair protein K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E AT5G15170 TDP1; tyrosyl-DNA phosphodiesterase-like protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E AT5G01310 APTX; APRATAXIN-like protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E AT3G14890 phosphoesterase K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E AT1G10520 Pol{lambda}; DNA polymerase lambda (POLL) K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E AT2G31320 PARP1; poly(ADP-ribose) polymerase 2 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E AT4G02390 PARP2; poly(ADP-ribose) polymerase K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
E AT5G22470 poly ADP-ribose polymerase 3 K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F AT5G16630 RAD4; DNA repair protein Rad4 family K10838 XPC; xeroderma pigmentosum group C-complementing protein
F AT1G16190 RAD23A; Rad23 UV excision repair protein family K10839 RAD23; UV excision repair protein RAD23
F AT1G79650 RAD23B; Rad23 UV excision repair protein family K10839 RAD23; UV excision repair protein RAD23
F AT5G38470 RAD23D; Rad23 UV excision repair protein family K10839 RAD23; UV excision repair protein RAD23
F AT3G02540 RAD23C; Rad23 UV excision repair protein family K10839 RAD23; UV excision repair protein RAD23
F AT5G16090 RAD23 UV excision repair family protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F AT3G42830 RING/U-box superfamily protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AT5G20570 RBX1; RING-box 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AT5G46210 CUL4; cullin4 K10609 CUL4; cullin 4
F AT3G46910 Cullin family protein K10609 CUL4; cullin 4
F AT4G12100 Cullin family protein K10609 CUL4; cullin 4
F AT4G05420 DDB1A; damaged DNA binding protein 1A K10610 DDB1; DNA damage-binding protein 1
F AT4G21100 DDB1B; damaged DNA binding protein 1B K10610 DDB1; DNA damage-binding protein 1
F AT5G58760 DDB2; damaged DNA binding 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F AT2G06040 F-box/LRR protein K15082 RAD7; DNA repair protein RAD7
F AT5G21900 RNI-like superfamily protein K15082 RAD7; DNA repair protein RAD7
F AT1G05120 Helicase protein with RING/U-box domain-containing protein K15083 RAD16; DNA repair protein RAD16
F AT1G02670 P-loop containing nucleoside triphosphate hydrolases superfamily protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F AT4G35800 NRPB1; RNA polymerase II large subunit K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F AT4G21710 NRPB2; DNA-directed RNA polymerase family protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F AT2G15430 NRPB3; DNA-directed RNA polymerase family protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F AT2G15400 NRPE3B; DNA-directed RNA polymerase family protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F AT5G09920 NRPB4; RNA polymerase II, Rpb4, core protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F AT3G22320 NRPB5; Eukaryotic rpb5 RNA polymerase subunit family protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F AT2G41340 RPB5D; RNA polymerase II fifth largest subunit, D K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F AT3G54490 RPB5E; RNA polymerase II fifth largest subunit, E K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F AT3G57080 NRPE5; Eukaryotic rpb5 RNA polymerase subunit family protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F AT5G57980 RPB5C; RNA polymerase II fifth largest subunit, C K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F AT5G51940 NRPB6A; RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F AT2G04630 NRPB6B; RNA polymerase Rpb6 K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F AT5G59180 NRPB7; DNA-directed RNA polymerase II K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F AT3G59600 NRPB8B; RNA polymerase Rpb8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F AT1G54250 NRPB8A; RNA polymerase Rpb8 K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F AT3G16980 NRPB9A; RNA polymerases M/15 Kd subunit K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F AT4G16265 NRPB9B; RNA polymerases M/15 Kd subunit K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F AT1G61700 RNA polymerases N / 8 kDa subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F AT1G11475 NRPB10; RNA polymerases N / 8 kDa subunit K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F AT3G52090 NRPB11; DNA-directed RNA polymerase, RBP11-like protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F AT5G41010 NRPB12; DNA directed RNA polymerase, 7 kDa subunit K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
F AT1G53690 DNA directed RNA polymerase, 7 kDa subunit K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F AT3G42830 RING/U-box superfamily protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AT5G20570 RBX1; RING-box 1 K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F AT5G46210 CUL4; cullin4 K10609 CUL4; cullin 4
F AT3G46910 Cullin family protein K10609 CUL4; cullin 4
F AT4G12100 Cullin family protein K10609 CUL4; cullin 4
F AT4G05420 DDB1A; damaged DNA binding protein 1A K10610 DDB1; DNA damage-binding protein 1
F AT4G21100 DDB1B; damaged DNA binding protein 1B K10610 DDB1; DNA damage-binding protein 1
F AT1G19750 Transducin/WD40 repeat-like superfamily protein K10570 ERCC8; DNA excision repair protein ERCC-8
F AT1G27840 ATCSA-1; Transducin/WD40 repeat-like superfamily protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F AT2G18760 CHR8; chromatin remodeling 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F AT3G61800 ENTH/VHS protein K23720 UVSSA; UV-stimulated scaffold protein A
F AT5G46030 transcription elongation factor-like protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E AT5G41360 XPB2; homolog of Xeroderma pigmentosum complementation group B 2 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E AT5G41370 XPB1; DNA repair helicase XPB1-like protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E AT1G03190 UVH6; RAD3-like DNA-binding helicase protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E AT3G61420 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E AT1G55750 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E AT1G05055 GTF2H2; general transcription factor II H2 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E AT1G18340 basal transcription factor complex subunit-like protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E AT4G17020 transcription factor-like protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E AT1G12400 Nucleotide excision repair, TFIIH, subunit TTDA K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E AT1G62886 Nucleotide excision repair, TFIIH, subunit TTDA K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E AT1G18040 CDKD1;3; cyclin-dependent kinase D1;3 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E AT1G66750 CAK4; CDK-activating kinase 4 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E AT1G73690 CDKD1;1; cyclin-dependent kinase D1;1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E AT5G27620 CYCH;1; cyclin H;1 K06634 CCNH; cyclin H
E AT4G30820 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E AT5G45400 RPA70C; Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT4G19130 Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT2G06510 RPA1A; replication protein A 1A K07466 RFA1; replication factor A1
E AT5G61000 RPA70D; Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT5G08020 RPA70B; RPA70-kDa subunit B K07466 RFA1; replication factor A1
E AT2G24490 RPA2; replicon protein A2 K10739 RFA2; replication factor A2
E AT3G02920 RPA32B; Replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
E AT3G52630 Nucleic acid-binding, OB-fold-like protein K10740 RPA3; replication factor A3
E AT4G18590 Nucleic acid-binding, OB-fold-like protein K10740 RPA3; replication factor A3
D Other NER factors
E AT3G05210 ERCC1; nucleotide repair protein K10849 ERCC1; DNA excision repair protein ERCC-1
E AT5G41150 UVH1; Restriction endonuclease, type II-like superfamily protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E AT3G28030 UVH3; 5'-3' exonuclease family protein K10846 ERCC5; DNA excision repair protein ERCC-5
E AT1G08130 LIG1; DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E AT5G48120 MET18; ARM repeat superfamily protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E AT1G26830 CUL3; cullin 3 K03869 CUL3; cullin 3
E AT1G69670 CUL3B; cullin 3B K03869 CUL3; cullin 3
E AT5G59140 BTB/POZ domain-containing protein K03872 ELOC; elongin-C
E AT2G42780 transcription elongation factor B polypeptide K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AT3G18524 MSH2; MUTS homolog 2 K08735 MSH2; DNA mismatch repair protein MSH2
E AT4G25540 MSH3; homolog of DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E AT4G02070 MSH6; MUTS homolog 6 K08737 MSH6; DNA mismatch repair protein MSH6
E AT3G24495 MSH7; MUTS homolog 7 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E AT4G09140 MLH1; MUTL-homologue 1 K08734 MLH1; DNA mismatch repair protein MLH1
E AT4G02460 PMS1; DNA mismatch repair protein K10858 PMS2; DNA mismatch repair protein PMS2
E AT4G35520 MLH3; MUTL protein homolog 3 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E AT5G63960 DNA polymerase delta subunit 1 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E AT2G42120 POLD2; DNA polymerase delta small subunit K02328 POLD2; DNA polymerase delta subunit 2
E AT1G78650 POLD3; DNA-directed DNA polymerase K03504 POLD3; DNA polymerase delta subunit 3
E AT1G09815 POLD4; polymerase delta 4 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E AT5G45400 RPA70C; Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT4G19130 Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT2G06510 RPA1A; replication protein A 1A K07466 RFA1; replication factor A1
E AT5G61000 RPA70D; Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT5G08020 RPA70B; RPA70-kDa subunit B K07466 RFA1; replication factor A1
E AT2G24490 RPA2; replicon protein A2 K10739 RFA2; replication factor A2
E AT3G02920 RPA32B; Replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
E AT3G52630 Nucleic acid-binding, OB-fold-like protein K10740 RPA3; replication factor A3
E AT4G18590 Nucleic acid-binding, OB-fold-like protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E AT5G22010 RFC1; replication factor C1 K10754 RFC1; replication factor C subunit 1
E AT1G21690 EMB1968; ATPase family associated with various cellular activities (AAA) K10755 RFC2_4; replication factor C subunit 2/4
E AT1G63160 RFC2; replication factor C 2 K10755 RFC2_4; replication factor C subunit 2/4
E AT1G77470 RFC3; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E AT5G27740 EMB2775; ATPase family associated with various cellular activities (AAA) K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E AT2G29570 PCNA2; proliferating cell nuclear antigen 2 K04802 PCNA; proliferating cell nuclear antigen
E AT1G07370 PCNA1; proliferating cellular nuclear antigen 1 K04802 PCNA; proliferating cell nuclear antigen
E AT1G29630 5'-3' exonuclease family protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E AT1G18090 5'-3' exonuclease family protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E AT1G08130 LIG1; DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E AT1G80710 DRS1; DROUGHT SENSITIVE 1 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E AT5G54260 MRE11; DNA repair and meiosis protein (Mre11) K10865 MRE11; double-strand break repair protein MRE11
E AT2G31970 RAD50; DNA repair-recombination protein (RAD50) K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E AT3G02680 NBS1; nijmegen breakage syndrome 1 K10867 NBN; nibrin
D BRCA1-core complex
E AT1G04020 BARD1; breast cancer associated RING 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E AT4G21070 BRCA1; breast cancer susceptibility1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E AT4G32960 BRISC/BRCA1-A complex protein K20776 BABAM; BRISC and BRCA1-A complex member 1
E AT5G42470 BRCA1-A complex subunit BRE-like protein K12173 BRE; BRCA1-A complex subunit BRE
E AT1G80210 BRCC36A; Mov34/MPN/PAD-1 family protein K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
E AT3G06820 BRCC36B; Mov34/MPN/PAD-1 family protein K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E AT1G20720 RAD3-like DNA-binding helicase protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E AT1G20750 RAD3-like DNA-binding helicase protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E AT1G77320 MEI1; transcription coactivator K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E AT4G02110 transcription coactivator K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E AT5G54260 MRE11; DNA repair and meiosis protein (Mre11) K10865 MRE11; double-strand break repair protein MRE11
E AT2G31970 RAD50; DNA repair-recombination protein (RAD50) K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E AT3G02680 NBS1; nijmegen breakage syndrome 1 K10867 NBN; nibrin
D BRCA complex
E AT5G01630 BRCA2B; BRCA2-like B K08775 BRCA2; breast cancer 2 susceptibility protein
E AT4G00020 BRCA2(IV); BREAST CANCER 2 like 2A K08775 BRCA2; breast cancer 2 susceptibility protein
E AT5G20850 RAD51; RAS associated with diabetes protein 51 K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E AT5G20850 RAD51; RAS associated with diabetes protein 51 K04482 RAD51; DNA repair protein RAD51
E AT2G28560 RAD51B; DNA repair (Rad51) family protein K10869 RAD51L1; RAD51-like protein 1
E AT2G45280 RAD51C; RAS associated with diabetes protein 51C K10870 RAD51L2; RAD51-like protein 2
E AT1G07745 RAD51D; DNA repair RAD51-like protein K10871 RAD51L3; RAD51-like protein 3
E AT5G64520 XRCC2; homolog of X-ray repair cross complementing 2 (XRCC2) K10879 XRCC2; DNA-repair protein XRCC2
E AT5G57450 XRCC3; homolog of X-ray repair cross complementing 3 (XRCC3) K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E AT1G71310 RAD52-1; cobalt ion binding protein K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E AT5G47870 RAD52-2; cobalt ion-binding protein K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E AT3G19210 RAD54; DNA repair/recombination protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AT3G24340 CHR40; chromatin remodeling 40 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AT1G05490 chr31; chromatin remodeling 31 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AT2G16390 DRD1; SNF2 domain-containing protein / helicase domain-containing protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AT2G21450 CHR34; chromatin remodeling 34 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AT3G42670 CHR38; chromatin remodeling 38 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E AT5G20420 CHR42; chromatin remodeling 42 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E AT1G31360 RECQL2; RECQ helicase L2 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E AT3G05740 RECQI1; RECQ helicase l1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E AT5G27680 RECQSIM; RECQ helicase SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E AT1G10930 RECQ4A; DNA helicase (RECQl4A) K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT1G60930 RECQ4B; RECQ helicase L4B K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT4G35740 RecQl3; DEAD/DEAH box RNA helicase family protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT1G27880 DEAD/DEAH box RNA helicase family protein K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E AT1G10930 RECQ4A; DNA helicase (RECQl4A) K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT1G60930 RECQ4B; RECQ helicase L4B K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT4G35740 RecQl3; DEAD/DEAH box RNA helicase family protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT5G63920 TOP3A; topoisomerase 3alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AT2G32000 DNA topoisomerase, type IA, core K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AT5G63540 RMI1; recQ-mediated instability protein (DUF1767) K10990 RMI1; RecQ-mediated genome instability protein 1
E AT1G08390 recQ-mediated instability-like protein K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E AT5G45400 RPA70C; Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT4G19130 Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT2G06510 RPA1A; replication protein A 1A K07466 RFA1; replication factor A1
E AT5G61000 RPA70D; Replication factor-A protein 1-like protein K07466 RFA1; replication factor A1
E AT5G08020 RPA70B; RPA70-kDa subunit B K07466 RFA1; replication factor A1
E AT2G24490 RPA2; replicon protein A2 K10739 RFA2; replication factor A2
E AT3G02920 RPA32B; Replication protein A, subunit RPA32 K10739 RFA2; replication factor A2
E AT3G52630 Nucleic acid-binding, OB-fold-like protein K10740 RPA3; replication factor A3
E AT4G18590 Nucleic acid-binding, OB-fold-like protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E AT5G55260 PPX2; protein phosphatase X 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E AT4G26720 PPX1; protein phosphatase X 1 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E AT5G17070 serine/threonine-protein phosphatase 4 regulatory subunit-like protein K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E AT3G06670 binding protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
E AT5G49390 serine/threonine-protein phosphatase 4 regulatory subunit-like protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E AT3G19870 AP-5 complex subunit beta-like protein K19022 AP5B1; AP-5 complex subunit beta-1
E AT2G20790 clathrin adaptor complexes medium subunit family protein K19023 AP5M1; AP-5 complex subunit mu-1
E AT3G15160 AP-5 complex subunit zeta-1 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E AT5G15920 SMC5; structural maintenance of chromosomes 5 K22803 SMC5; structural maintenance of chromosomes protein 5
E AT5G61460 MIM; P-loop containing nucleoside triphosphate hydrolases superfamily protein K22804 SMC6; structural maintenance of chromosomes protein 6
E AT5G07660 SMC6A; structural maintenance of chromosomes 6A K22804 SMC6; structural maintenance of chromosomes protein 6
E AT5G21140 emb1379; embryo defective 1379 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E AT3G15150 HPY2; RING/U-box superfamily protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E AT1G51130 Nse4, component of Smc5/6 DNA repair complex K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E AT3G20760 Nse4, component of Smc5/6 DNA repair complex K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E AT2G22140 EME1B; essential meiotic endonuclease 1B K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E AT2G21800 EME1A; essential meiotic endonuclease 1A K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E AT4G30870 MUS81; Restriction endonuclease, type II-like superfamily protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E AT5G39770 Restriction endonuclease, type II-like superfamily protein K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E AT1G64750 DSS1(I); deletion of SUV3 suppressor 1(I) K10881 SHFM1; 26 proteasome complex subunit DSS1
E AT5G45010 DSS1(V); DSS1 homolog on chromosome V K10881 SHFM1; 26 proteasome complex subunit DSS1
E AT2G30350 Excinuclease ABC, C subunit, N-terminal K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E AT5G43210 Excinuclease ABC, C subunit, N-terminal K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E AT1G01880 5'-3' exonuclease family protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E AT3G48900 single-stranded DNA endonuclease family protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E AT4G39420 spatacsin carboxy-terminus protein K19026 SPG11; spatacsin
E AT2G25730 zinc finger FYVE domain protein K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E AT4G37280 MRG family protein K11339 MORF4L1; mortality factor 4-like protein 1
E AT1G02740 MRG family protein K11339 MORF4L1; mortality factor 4-like protein 1
E AT5G40290 HD domain-containing metal-dependent phosphohydrolase family protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E AT5G40270 HD domain-containing metal-dependent phosphohydrolase family protein K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E AT3G27120 P-loop containing nucleoside triphosphate hydrolases superfamily protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E AT4G33925 SSN2; zinc finger SWIM domain protein K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E AT1G55915 zinc ion binding protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E AT1G14410 WHY1; ssDNA-binding transcriptional regulator K26559 WHY1; single-stranded DNA-binding protein WHY1
E AT1G71260 ATWHY2; WHIRLY 2 K26561 WHY2; single-stranded DNA-binding protein WHY2
E AT2G02740 WHY3; ssDNA-binding transcriptional regulator K26560 WHY3; single-stranded DNA-binding protein WHY3
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E AT1G16970 KU70; ATP-dependent DNA helicase 2 subunit Ku70-like protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E AT1G48050 KU80; Ku80 family protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E AT5G54260 MRE11; DNA repair and meiosis protein (Mre11) K10865 MRE11; double-strand break repair protein MRE11
E AT2G31970 RAD50; DNA repair-recombination protein (RAD50) K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E AT5G57160 ATLIG4; DNA ligase IV K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E AT3G23100 XRCC4; DNA ligase IV-binding protein K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E AT1G10520 Pol{lambda}; DNA polymerase lambda (POLL) K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E AT5G01310 APTX; APRATAXIN-like protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E AT1G11800 endonuclease/exonuclease/phosphatase family protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E AT5G24280 GMI1; gamma-irradiation and mitomycin c induced 1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E AT5G65740 zinc ion binding protein K10606 FANCL; E3 ubiquitin-protein ligase FANCL [EC:2.3.2.27]
E AT1G35530 FANCM; DEAD/DEAH box RNA helicase family protein K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E AT1G78790 centromere protein X K15360 STRA13; centromere protein X
E AT3G24515 UBC37; ubiquitin-conjugating enzyme 37 K13960 UBE2T; ubiquitin-conjugating enzyme E2 T [EC:2.3.2.23]
D Bloom's syndrome complex (BTR)
E AT1G10930 RECQ4A; DNA helicase (RECQl4A) K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT1G60930 RECQ4B; RECQ helicase L4B K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT4G35740 RecQl3; DEAD/DEAH box RNA helicase family protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E AT5G63920 TOP3A; topoisomerase 3alpha K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AT2G32000 DNA topoisomerase, type IA, core K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E AT5G63540 RMI1; recQ-mediated instability protein (DUF1767) K10990 RMI1; RecQ-mediated genome instability protein 1
E AT1G08390 recQ-mediated instability-like protein K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
E AT4G14970 fanconi anemia group D2 protein K10891 FANCD2; fanconi anemia group D2 protein
E AT5G49110 fanconi anemia group I-like protein K10895 FANCI; fanconi anemia group I protein
D Downstream FA components
E AT5G01630 BRCA2B; BRCA2-like B K08775 BRCA2; breast cancer 2 susceptibility protein
E AT4G00020 BRCA2(IV); BREAST CANCER 2 like 2A K08775 BRCA2; breast cancer 2 susceptibility protein
E AT1G20720 RAD3-like DNA-binding helicase protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E AT1G20750 RAD3-like DNA-binding helicase protein K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E AT1G48360 zinc ion binding/nucleic acid binding/hydrolase K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E AT5G20850 RAD51; RAS associated with diabetes protein 51 K04482 RAD51; DNA repair protein RAD51
E AT2G45280 RAD51C; RAS associated with diabetes protein 51C K10870 RAD51L2; RAD51-like protein 2
E AT3G48470 EMB2423; embryo defective 2423 K11137 TELO2; telomere length regulation protein
E AT3G05090 LRS1; Transducin/WD40 repeat-like superfamily protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E AT3G19980 FYPP3; flower-specific, phytochrome-associated protein phosphatase 3 K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E AT1G50370 FYPP1; Calcineurin-like metallo-phosphoesterase superfamily protein K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E AT1G07990 SIT4 phosphatase-associated family protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E AT2G28360 SIT4 phosphatase-associated family protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E AT3G45190 SIT4 phosphatase-associated family protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E AT1G30470 SIT4 phosphatase-associated family protein K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
D Ubiquitin ligases
D Others
E AT4G21520 Transducin/WD40 repeat-like superfamily protein K23314 WRAP53; telomerase Cajal body protein 1
E AT2G20330 Transducin/WD40 repeat-like superfamily protein K24752 WDR70; WD repeat-containing protein 70
E AT1G80710 DRS1; DROUGHT SENSITIVE 1 K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D AT5G44740 POLH; Y-family DNA polymerase H K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D AT1G49980 DNA/RNA polymerases superfamily protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D AT5G44750 REV1; DNA-directed DNA polymerase K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D AT1G67500 REV3; recovery protein 3 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D AT1G14400 UBC1; ubiquitin carrier protein 1 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D AT2G02760 UBC2; ubiquiting-conjugating enzyme 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D AT5G62540 UBC3; ubiquitin-conjugating enzyme 3 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D AT5G22750 RAD5; DNA/RNA helicase protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D AT5G43530 Helicase protein with RING/U-box domain-containing protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D AT5G05130 DNA/RNA helicase protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D AT1G23260 MMZ1; MMS ZWEI homologue 1 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D AT3G52560 UEV1D-4; ubiquitin E2 variant 1D-4 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D AT2G36060 MMZ3; MMS ZWEI homologue 3 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D AT1G70660 MMZ2; MMS ZWEI homologue 2 K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D AT1G16890 UBC36; ubiquitin-conjugating enzyme 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D AT1G78870 UBC35; ubiquitin-conjugating enzyme 35 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D AT2G29570 PCNA2; proliferating cell nuclear antigen 2 K04802 PCNA; proliferating cell nuclear antigen
D AT1G07370 PCNA1; proliferating cellular nuclear antigen 1 K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D AT3G05480 RAD9; cell cycle checkpoint control protein family K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D AT1G52530 Hus1-like protein K10903 HUS1; HUS1 checkpoint protein
D AT4G17760 PCNA domain-containing protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D AT5G66130 ATRAD17; RADIATION SENSITIVE 17 K06662 HRAD17; cell cycle checkpoint protein
D AT1G21690 EMB1968; ATPase family associated with various cellular activities (AAA) K10755 RFC2_4; replication factor C subunit 2/4
D AT1G63160 RFC2; replication factor C 2 K10755 RFC2_4; replication factor C subunit 2/4
D AT1G77470 RFC3; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D AT5G27740 EMB2775; ATPase family associated with various cellular activities (AAA) K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D AT4G17760 PCNA domain-containing protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D AT5G52910 ATIM; timeless family protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D AT3G02820 zinc knuckle (CCHC-type) family protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D AT3G48470 EMB2423; embryo defective 2423 K11137 TELO2; telomere length regulation protein
D AT1G79190 ARM repeat superfamily protein K20403 TTI1; TELO2-interacting protein 1
D AT2G39910 ARM repeat superfamily protein K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D AT5G63220 golgi-to-ER traffic-like protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D AT5G40820 ATR; Ataxia telangiectasia-mutated and RAD3-like protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D AT3G48190 ATM; Serine/Threonine-kinase ATM-like protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D AT3G02520 GRF7; general regulatory factor 7 K06630 YWHAE; 14-3-3 protein epsilon
D AT5G16050 GRF5; general regulatory factor 5 K06630 YWHAE; 14-3-3 protein epsilon
D AT1G35160 GF14_PHI; GF14 protein phi chain K06630 YWHAE; 14-3-3 protein epsilon
D AT4G09000 GRF1; general regulatory factor 1 K06630 YWHAE; 14-3-3 protein epsilon
D AT5G38480 GRF3; general regulatory factor 3 K06630 YWHAE; 14-3-3 protein epsilon
D AT1G78300 GRF2; general regulatory factor 2 K06630 YWHAE; 14-3-3 protein epsilon
D AT1G22300 GRF10; general regulatory factor 10 K06630 YWHAE; 14-3-3 protein epsilon
D AT1G34760 GRF11; general regulatory factor 11 K06630 YWHAE; 14-3-3 protein epsilon
D AT2G42590 GRF9; general regulatory factor 9 K06630 YWHAE; 14-3-3 protein epsilon
D AT5G10450 GRF6; G-box regulating factor 6 K06630 YWHAE; 14-3-3 protein epsilon
D AT5G65430 GRF8; general regulatory factor 8 K06630 YWHAE; 14-3-3 protein epsilon
D AT1G78220 GRF13; general regulatory factor 13 K06630 YWHAE; 14-3-3 protein epsilon
D AT1G02970 WEE1; WEE1-like kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D AT3G44200 NEK6; serine/threonine-protein kinase NEK5 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT3G63280 NEK4; NIMA-related kinase 4 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT3G04810 NEK2; NIMA-related kinase 2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT5G28290 NEK3; NIMA-related kinase 3 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT3G20860 NEK5; Serine/Threonine kinase catalytic domain protein K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT3G12200 Nek7; NIMA-related kinase 7 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT1G54510 NEK1; NIMA-related serine/threonine kinase 1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D AT3G54750 downstream neighbor of Son K22422 DONSON; protein downstream neighbor of Son
D AT2G27600 SKD1; AAA-type ATPase family protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D AT1G08270 vacuolar protein sorting-associated protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D AT4G01000 Ubiquitin-like superfamily protein K25059 SDE2; replication stress response regulator SDE2
D AT4G29860 EMB2757; Transducin/WD40 repeat-like superfamily protein K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D AT4G32700 MUS308 and mammalian DNA polymerase-like protein K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D AT5G64420 DNA polymerase V family K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D AT5G52800 DNA primase K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D AT3G26680 SNM1; DNA repair metallo-beta-lactamase family protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D AT1G19025 DNA repair metallo-beta-lactamase family protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D AT2G45700 sterile alpha motif (SAM) domain-containing protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D AT1G27410 DNA repair metallo-beta-lactamase family protein K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D AT5G60370 exonuclease V-like protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D AT4G31150 endonuclease V family protein K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D AT5G07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D AT4G21590 ENDO3; endonuclease 3 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D AT4G21600 ENDO5; endonuclease 5 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D AT1G11190 BFN1; bifunctional nuclease i K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D AT1G68290 ENDO2; endonuclease 2 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D AT4G21585 ENDO4; endonuclease 4 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D AT1G03750 SWI2; switch 2 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D AT1G04510 MAC3A; MOS4-associated complex 3A K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D AT2G33340 MAC3B; MOS4-associated complex 3B K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D AT1G09770 CDC5; cell division cycle 5 K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D AT3G18165 MOS4; modifier of snc1,4 K12861 BCAS2; pre-mRNA-splicing factor SPF27
D AT4G15900 PRL1; pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
D AT3G16650 Transducin/WD40 repeat-like superfamily protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D AT1G68760 NUDX1; nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AT3G46940 DUT1; DUTP-PYROPHOSPHATASE-LIKE 1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D AT2G21790 RNR1; ribonucleotide reductase 1 K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D AT3G27060 TSO2; Ferritin/ribonucleotide reductase-like family protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
D AT3G23580 RNR2A; ribonucleotide reductase 2A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D AT1G12370 PHR1; photolyase 1 K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E AT3G18630 UNG; uracil dna glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E AT1G75230 DNA glycosylase superfamily protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AT3G50880 DNA glycosylase superfamily protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AT1G19480 DNA glycosylase superfamily protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E AT3G12040 DNA-3-methyladenine glycosylase (MAG) K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E AT4G12740 HhH-GPD base excision DNA repair family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E AT1G75090 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT5G44680 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT1G15970 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT3G12710 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT5G57970 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT1G13635 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT1G80850 DNA glycosylase superfamily protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E AT1G52500 MMH-1; MUTM homolog-1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E AT2G31450 ATNTH1; DNA glycosylase superfamily protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AT1G05900 NTH2; endonuclease III 2 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E AT3G47830 DNA glycosylase superfamily protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E AT2G41460 ARP; apurinic endonuclease-redox protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E AT1G50840 POLGAMMA2; polymerase gamma 2 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AT3G20540 POLGAMMA1; polymerase gamma 1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E AT1G50840 POLGAMMA2; polymerase gamma 2 K02335 polA; DNA polymerase I [EC:2.7.7.7]
E AT3G20540 POLGAMMA1; polymerase gamma 1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F ArthCp014 rpoB; RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F ArthCp013 rpoC1; RNA polymerase beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ArthCp012 rpoC2; RNA polymerase beta'' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F ArthCp055 rpoA; RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E AT1G65070 DNA mismatch repair protein MutS, type 2 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E AT3G18580 Nucleic acid-binding, OB-fold-like protein K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E AT2G19490 RECA2; recA DNA recombination family protein K03553 recA; recombination protein RecA
E AT1G79050 RECA1; recA DNA recombination family protein K03553 recA; recombination protein RecA
E AT3G32920 P-loop containing nucleoside triphosphate hydrolases superfamily protein K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E AT2G19490 RECA2; recA DNA recombination family protein K03553 recA; recombination protein RecA
E AT1G79050 RECA1; recA DNA recombination family protein K03553 recA; recombination protein RecA
E AT3G32920 P-loop containing nucleoside triphosphate hydrolases superfamily protein K03553 recA; recombination protein RecA
E AT5G50340 DNA repair protein RadA-like protein K04485 radA; DNA repair protein RadA/Sms
E AT2G01440 DEAD/DEAH box RNA helicase family protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F AT3G10690 GYRA; DNA GYRASE A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F AT3G10270 GYRB1; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AT5G04130 GYRB2; DNA GYRASE B2 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F AT5G04110 GYRB3; DNA GYRASE B3 K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D AT2G19490 RECA2; recA DNA recombination family protein K03553 recA; recombination protein RecA
D AT1G79050 RECA1; recA DNA recombination family protein K03553 recA; recombination protein RecA
D AT3G32920 P-loop containing nucleoside triphosphate hydrolases superfamily protein K03553 recA; recombination protein RecA
D AT3G18580 Nucleic acid-binding, OB-fold-like protein K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D AT1G68760 NUDX1; nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D AT3G46940 DUT1; DUTP-PYROPHOSPHATASE-LIKE 1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024