+E Transcription factors KO
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Transcription Factors - Agrobacterium fabrum
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Atu4545 pobR; transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA
D Atu3152 transcriptional regulator, AraC family K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein
D Atu4521 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Atu4459 ada; 6-O-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D Atu0901 ada; 6-O-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
C LysR family
D Atu2078 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Atu6055 gcvA; transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Atu2312 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator
D Atu4543 pcaQ; transcriptional regulator, LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator
D Atu3827 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH
D Atu4641 oxyR; transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D Atu0928 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D Atu3078 ampR; transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase
D Atu4279 nac; transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein
D Atu2512 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT
C DeoR family
D Atu4841 deoR; transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor
D Atu3898 glpR; transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor
D Atu6138 accR; Repressor of the acc and arc operons K20271 accR; DeoR family transcriptional regulator, repressor of opine catabolism and conjugal transfer
C LacI family
D Atu0590 aglR; transcriptional regulator repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu1522 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu5078 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu5393 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu5433 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu4481 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu3337 thuR; transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu5007 socR; Santhopine-responsive transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu3062 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu4550 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Atu4373 cytR; transcriptional repressor, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Atu4743 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor
D Atu4685 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor
C GntR family
D Atu0182 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein
D Atu3799 hutC; transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Atu0160 hutC; transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor
D Atu2606 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D Atu3280 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator
D Atu0662 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Atu5075 pdhR; transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Atu2821 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Atu4718 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Atu4232 transcriptional regulator, GntR family K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator
C TetR/AcrR family
D Atu4205 tetR; transcriptional regulator, TetR family K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D Atu0828 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D Atu2059 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes
D Atu3201 acrR; transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor
D Atu2384 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D Atu0993 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Atu0279 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Atu5443 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Atu4217 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D Atu2549 ameR; transcriptional regulator, TetR family K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon
C Lrp/AsnC family
D Atu4159 putR; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Atu4818 lrp; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Atu4763 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Atu1885 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator
C LuxR family
D Atu2727 transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
D Atu6134 traR; transcriptional regulator K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids
C MarR family
D Atu1085 slyA; transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin
D Atu0846 ohrR; transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Atu5273 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Atu4864 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Atu5064 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Atu5211 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Atu0938 cueR; transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Atu1197 cueR; transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator
D Atu3915 soxR; transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
C Fur family
D Atu0354 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Atu1518 zur; transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D Atu0153 irr; transcriptional regulator, Fur family K09826 irr; Fur family transcriptional regulator, iron response regulator
C IclR family
D Atu4546 pcaR; transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein
D Atu5136 blcR; Transcriptional repressor of the blcABC operon K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor
C CRP/FNR family
D Atu1602 fnrN; transcriptional activator, Crp family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Atu4380 nnrR; transcriptional regulatory, Crp family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator
C Rrf2 family
D Atu0201 aau3; conserved hypothetical protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator
C ArsR family
D Atu5321 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Atu1492 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
C XRE family
D Atu3587 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D Atu0608 transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
C PadR family
C Other families
D Atu1284 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Atu4741 acoR; transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Atu2564 modE; molybdenum-binding transcriptional repressor K02019 modE; molybdate transport system regulatory protein
D Atu1735 hypothetical protein K07726 K07726; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D Atu4157 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D Atu0675 conserved hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
B Other transcription factors
C BglG family
C Others
D Atu3624 bolA; stress induced morphogen K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator
D Atu5041 parB; plasmid partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Atu2828 parB1; chromosome Partitioning Protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Atu6103 parB; plasmid partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Atu6044 repB; replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Atu3923 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Atu5001 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Atu2765 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Atu0916 ros; transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis
D Atu0328 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D Atu0781 conserved hypothetical protein K07735 algH; putative transcriptional regulator
D Atu1359 dksA; dnaK deletion suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D Atu1166 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR
D Atu2103 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ
D Atu1715 exoR; exopolysaccharide production negative regulator K25885 exoR; exopolysaccharide production negative regulator
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0