+E Transcription factors KO #

  Transcription Factors - Agrobacterium fabrum

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AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Atu4545 pobR; transcriptional regulator, AraC family K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D Atu3152 transcriptional regulator, AraC family K23237 melR; AraC family transcriptional regulator, melibiose operon regulatory protein D Atu4521 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Atu4459 ada; 6-O-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D Atu0901 ada; 6-O-methylguanine-DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D Atu2078 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Atu6055 gcvA; transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Atu2312 transcriptional regulator, LysR family K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D Atu4543 pcaQ; transcriptional regulator, LysR family K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D Atu3827 transcriptional regulator, LysR family K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D Atu4641 oxyR; transcriptional regulator, LysR family K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D Atu0928 transcriptional regulator, LysR family K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D Atu3078 ampR; transcriptional regulator, LysR family K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D Atu4279 nac; transcriptional regulator, LysR family K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D Atu2512 transcriptional regulator, LysR family K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT C DeoR family D Atu4841 deoR; transcriptional regulator, DeoR family K11534 deoR; DeoR family transcriptional regulator, deoxyribose operon repressor D Atu3898 glpR; transcriptional regulator, DeoR family K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D Atu6138 accR; Repressor of the acc and arc operons K20271 accR; DeoR family transcriptional regulator, repressor of opine catabolism and conjugal transfer C LacI family D Atu0590 aglR; transcriptional regulator repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu1522 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu5078 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu5393 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu5433 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu4481 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu3337 thuR; transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu5007 socR; Santhopine-responsive transcriptional repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu3062 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu4550 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Atu4373 cytR; transcriptional repressor, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Atu4743 transcriptional regulator, LacI family K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D Atu4685 transcriptional regulator, LacI family K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D Atu0182 transcriptional regulator, GntR family K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D Atu3799 hutC; transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Atu0160 hutC; transcriptional regulator, GntR family K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D Atu2606 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D Atu3280 transcriptional regulator, GntR family K03710 K03710; GntR family transcriptional regulator D Atu0662 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Atu5075 pdhR; transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Atu2821 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Atu4718 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Atu4232 transcriptional regulator, GntR family K23466 tgnR; GntR family transcriptional regulator, trigonelline degradation regulator C TetR/AcrR family D Atu4205 tetR; transcriptional regulator, TetR family K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein D Atu0828 betI; transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D Atu2059 transcriptional regulator, TetR family K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D Atu3201 acrR; transcriptional regulator, TetR family K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D Atu2384 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D Atu0993 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Atu0279 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Atu5443 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Atu4217 transcriptional regulator, TetR family K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D Atu2549 ameR; transcriptional regulator, TetR family K18905 ameR; TetR/AcrR family transcriptional regulator, repressor of the ameABC operon C Lrp/AsnC family D Atu4159 putR; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Atu4818 lrp; transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Atu4763 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D Atu1885 transcriptional regulator, AsnC family K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D Atu2727 transcriptional regulator, LuxR family K07782 sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA D Atu6134 traR; transcriptional regulator K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids C MarR family D Atu1085 slyA; transcriptional regulator, MarR family K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D Atu0846 ohrR; transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Atu5273 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Atu4864 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Atu5064 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Atu5211 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D Atu0938 cueR; transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Atu1197 cueR; transcriptional regulator, MerR family K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D Atu3915 soxR; transcriptional regulator, MerR family K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D Atu0354 fur; ferric uptake regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Atu1518 zur; transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D Atu0153 irr; transcriptional regulator, Fur family K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D Atu4546 pcaR; transcriptional regulator, IclR family K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D Atu5136 blcR; Transcriptional repressor of the blcABC operon K20539 blcR; IclR family transcriptional regulator, blcABC operon repressor C CRP/FNR family D Atu1602 fnrN; transcriptional activator, Crp family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Atu4380 nnrR; transcriptional regulatory, Crp family K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family D Atu0201 aau3; conserved hypothetical protein K13772 rirA; Rrf2 family transcriptional regulator, iron-responsive regulator C ArsR family D Atu5321 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Atu1492 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor C XRE family D Atu3587 transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator D Atu0608 transcriptional regulator K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator C PadR family C Other families D Atu1284 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Atu4741 acoR; transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D Atu2564 modE; molybdenum-binding transcriptional repressor K02019 modE; molybdate transport system regulatory protein D Atu1735 hypothetical protein K07726 K07726; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D Atu4157 putA; proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D Atu0675 conserved hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB B Other transcription factors C BglG family C Others D Atu3624 bolA; stress induced morphogen K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D Atu5041 parB; plasmid partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Atu2828 parB1; chromosome Partitioning Protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Atu6103 parB; plasmid partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Atu6044 repB; replication protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Atu3923 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Atu5001 repB; replication protein B K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Atu2765 transcriptional regulator, CarD family K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Atu0916 ros; transcriptional regulator K25884 mucR; MucR family transcriptional regulator, transcriptional regulator of exopolysaccharide biosynthesis D Atu0328 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor D Atu0781 conserved hypothetical protein K07735 algH; putative transcriptional regulator D Atu1359 dksA; dnaK deletion suppressor protein K06204 dksA; RNA polymerase-binding transcription factor D Atu1166 conserved hypothetical protein K07738 nrdR; transcriptional repressor NrdR D Atu2103 conserved hypothetical protein K03925 mraZ; transcriptional regulator MraZ D Atu1715 exoR; exopolysaccharide production negative regulator K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024 #
Classification taken and modified from TRANSFAC 7.0