+F Repair protein KO #

  DNA Repair and Recombination Proteins - Azorhizobium caulinodans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D AZC_2824 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E AZC_0456 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AZC_3684 endonuclease III/Nth precursor K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases D AZC_0874 endonuclease K05986 NUCS; nuclease S1 [EC:3.1.30.1] C Helicases C PSO4 complex C Modulation of nucleotide pools D AZC_0315 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AZC_0398 putative ADP-ribose phosphohydrolase precursor K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AZC_0707 deoxy UTP pyrophosphatase subfamily 1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D AZC_3682 methylated-DNA-(protein)-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AZC_2824 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D AZC_2742 uncharacterized protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] D AZC_4284 alkylated DNA repair protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E AZC_0251 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AZC_1251 uracil-DNA glycosylase superfamily protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AZC_3006 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AZC_3494 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E AZC_0371 HhH-GPD protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E AZC_0456 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AZC_0402 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E AZC_0800 formamidopyrimidine-DNA glycolase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E AZC_3684 endonuclease III/Nth precursor K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AZC_2812 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AZC_1397 exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E AZC_0093 exodeoxyribonuclease III protein K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AZC_1851 recJ; RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AZC_0149 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AZC_4464 DNA polymerase A K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AZC_2887 excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A E AZC_3127 excinuclease ABC B subunit K03702 uvrB; excinuclease ABC subunit B E AZC_3966 excinuclease ABC C subunit K03703 uvrC; excinuclease ABC subunit C E AZC_4475 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AZC_4464 DNA polymerase A K02335 polA; DNA polymerase I [EC:2.7.7.7] E AZC_0149 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AZC_0887 DNA-directed RNA polymerase beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AZC_0888 RNA polymerase I subunit A K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AZC_2530 DNA-directed RNA polymerase alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F AZC_1253 RNA polymerase omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AZC_1221 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AZC_4714 mutS; DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E AZC_2393 DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E AZC_2385 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E AZC_3116 exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E AZC_1691 DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AZC_1013 DNA polymerase III beta chain K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AZC_0540 DNA polymerase III chi subunit K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E AZC_0569 DNA polymerase III K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AZC_2174 putative DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AZC_2481 putative exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AZC_0005 DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AZC_0142 ATPase K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AZC_0149 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AZC_4475 DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AZC_2886 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AZC_2855 recA; RecA protein K03553 recA; recombination protein RecA E AZC_0515 ruvA; DNA recombination protein K03550 ruvA; holliday junction DNA helicase RuvA E AZC_0519 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AZC_0513 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AZC_4144 primosomal protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E AZC_2855 recA; RecA protein K03553 recA; recombination protein RecA E AZC_0533 radA; DNA repair protein K04485 radA; DNA repair protein RadA/Sms E AZC_1012 recF; DNA replication and repair protein K03629 recF; DNA replication and repair protein RecF E AZC_1725 helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AZC_1851 recJ; RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AZC_2006 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E AZC_0147 recR; recombination protein K06187 recR; recombination protein RecR E AZC_4568 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E AZC_0515 ruvA; DNA recombination protein K03550 ruvA; holliday junction DNA helicase RuvA E AZC_0519 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AZC_0513 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E AZC_0714 putative exonuclease V K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E AZC_0713 conserved hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E AZC_3059 protein of unknown function K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E AZC_1005 ATP-dependent DNA ligase protein Ku K10979 ku; DNA end-binding protein Ku E AZC_1007 ATP-dependent DNA ligase protein Ku K10979 ku; DNA end-binding protein Ku E AZC_1006 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AZC_2328 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AZC_1009 DNA gyrase B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AZC_1861 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F AZC_2284 topoisomerase IB K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AZC_1611 histone-like bacterial DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AZC_1851 recJ; RecJ exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AZC_2006 recO; recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F AZC_0147 recR; recombination protein K06187 recR; recombination protein RecR F AZC_0149 NAD-dependent DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F AZC_2293 integration host factor alpha subunit K04764 ihfA; integration host factor subunit alpha F AZC_3716 integration host factor beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F AZC_2842 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AZC_2887 excinuclease ABC A subunit K03701 uvrA; excinuclease ABC subunit A F AZC_3127 excinuclease ABC B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AZC_1852 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D AZC_2855 recA; RecA protein K03553 recA; recombination protein RecA D AZC_2201 lexA; peptidase S24 protein K01356 lexA; repressor LexA [EC:3.4.21.88] D AZC_4568 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D AZC_3906 hypothetical protein K14160 imuA; protein ImuA D AZC_3905 conserved hypothetical cytosolic protein precursor K14161 imuB; protein ImuB D AZC_3904 DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D AZC_2886 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D AZC_0109 helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D AZC_0315 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AZC_0398 putative ADP-ribose phosphohydrolase precursor K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D AZC_0707 deoxy UTP pyrophosphatase subfamily 1 K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AZC_1268 ribonucleotide reductase large subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024