+F Repair protein KO
#
DNA Repair and Recombination Proteins - Azoarcus olearius BH72
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D azo3458 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E azo3976 probable uracil-DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E azo3812 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E azo1435 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D azo0728 bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D azo1140 conserved hypothetical mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D azo1139 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D azo2292 ada; Methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
D azo3458 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D azo2293 alkB; DNA-directed DNA polymerase. K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E azo3976 probable uracil-DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-]
E azo2249 putative DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E azo1713 DNA-directed DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
E azo1833 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E azo3812 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E azo3621 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E azo0759 mutM; MutM protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E azo1435 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E azo2880 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E azo3664 xthA2; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E azo1505 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E azo3600 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E azo0088 uvrA1; putative excinuclease ABC subunit K03701 uvrA; excinuclease ABC subunit A
E azo3387 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E azo1611 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E azo1648 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E azo3213 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E azo0345 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E azo3600 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F azo3424 rpoB; DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F azo3423 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F azo3391 rpoA; DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F azo3952 rpoZ; DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F azo1673 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E azo2052 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D Molecular matchmaker
E azo3126 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E azo1467 xseA; Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E azo1200 xseB; Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E azo3208 dnaE1; DNA-directed DNA polymerase. K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E azo0002 dnaN; DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E azo2905 holC; DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
E azo3217 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E azo1596 holB; DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E azo2054 dnaQ; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E azo3948 putative DNA-directed polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E azo2202 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E azo0067 polC; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E azo2410 DNA polymerase III epsilon chain-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E azo0957 dnaX; DNA polymerase III subunit Tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E azo3213 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E azo0345 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E azo3385 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E azo0356 vsr; putative hypothetical very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E azo3851 recB; ATP-dependent exoDNAse beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
E azo3858 recC; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
E azo3850 recD; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E azo0507 recA; recombinase A K03553 recA; recombination protein RecA
E azo0602 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E azo0601 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E azo0571 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E azo3978 priA; primosomal protein N' (Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E azo0719 priB; putative primosomal replication proteinN K02686 priB; primosomal replication protein N
E azo0200 sbcC; exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50
E azo0199 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E azo0507 recA; recombinase A K03553 recA; recombination protein RecA
E azo1716 radA; probable DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E azo0477 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E azo0005 mloB; putative restriction modification gene K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E azo1505 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E azo1644 recO; DNA repair protein RecO (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
E azo0959 recombination protein RecR K06187 recR; recombination protein RecR
E azo2579 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
E azo0082 rdgC; recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC
E azo0602 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E azo0601 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E azo0571 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
E azo0200 sbcC; exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50
E azo0199 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11
E azo0576 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E azo1740 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku
E azo1741 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F azo1066 gyrA; DNA topoisomerase (ATP-hydrolysing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F azo0003 gyrB; DNA topoisomerase (ATP-hydrolysing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F azo1795 conserved hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F azo0315 hupB; DNA-binding protein HU (DNA-binding protein II) K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F azo1505 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F azo1644 recO; DNA repair protein RecO (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O)
F azo0959 recombination protein RecR K06187 recR; recombination protein RecR
F azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
F azo2893 putative fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein
F azo1085 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha
F azo1073 ihfB; probable integration host factor, beta-subunit K05788 ihfB; integration host factor subunit beta
E Supressor
F azo3318 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F azo0088 uvrA1; putative excinuclease ABC subunit K03701 uvrA; excinuclease ABC subunit A
F azo3387 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F azo1611 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
F azo3221 hvrA2; putative trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS
F azo0194 hvrA1; putative trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D azo2786 dinP; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D azo0507 recA; recombinase A K03553 recA; recombination protein RecA
D azo2064 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88]
D azo2579 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N)
D azo3955 conserved hypothetical protein K14160 imuA; protein ImuA
D azo3956 conserved hypothetical protein K14161 imuB; protein ImuB
D azo3957 DNA polymerase III, alpha subunit, putative K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D azo3385 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D azo0506 recX; probable RecX-family regulatory protein K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D azo0186 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4]
D azo1560 yoaA; probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D azo0445 probable ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D azo0728 bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D azo1140 conserved hypothetical mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D azo1139 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D azo1411 conserved hypothetical ribonucleoside reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024