+F Repair protein KO #

  DNA Repair and Recombination Proteins - Azoarcus olearius BH72

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D azo3458 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E azo3976 probable uracil-DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E azo3812 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E azo1435 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D azo0728 bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D azo1140 conserved hypothetical mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D azo1139 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D azo2292 ada; Methylated-DNA--[protein]-cysteine S-methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D azo3458 phrB; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D azo2293 alkB; DNA-directed DNA polymerase. K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E azo3976 probable uracil-DNA glycosylase K10800 SMUG1; single-strand selective monofunctional uracil DNA glycosylase [EC:3.2.2.-] E azo2249 putative DNA polymerase related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E azo1713 DNA-directed DNA polymerase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E azo1833 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E azo3812 mutY; putative A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E azo3621 tag; DNA-3-methyladenine glycosidase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E azo0759 mutM; MutM protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E azo1435 nth; DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E azo2880 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E azo3664 xthA2; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E azo1505 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E azo3600 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E azo0088 uvrA1; putative excinuclease ABC subunit K03701 uvrA; excinuclease ABC subunit A E azo3387 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E azo1611 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E azo1648 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E azo3213 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E azo0345 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E azo3600 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F azo3424 rpoB; DNA-directed RNA polymerase K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F azo3423 rpoC; DNA-directed RNA polymerase K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F azo3391 rpoA; DNA-directed RNA polymerase K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F azo3952 rpoZ; DNA-directed RNA polymerase K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F azo1673 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E azo2052 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E azo3126 mutL; DNA mismatch repair protein K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E azo1467 xseA; Exodeoxyribonuclease VII K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E azo1200 xseB; Exodeoxyribonuclease VII K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E azo3208 dnaE1; DNA-directed DNA polymerase. K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E azo0002 dnaN; DNA-directed DNA polymerase K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E azo2905 holC; DNA-directed DNA polymerase K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E azo3217 holA; DNA-directed DNA polymerase K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E azo1596 holB; DNA-directed DNA polymerase K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E azo2054 dnaQ; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E azo3948 putative DNA-directed polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E azo2202 DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E azo0067 polC; DNA-directed DNA polymerase K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E azo2410 DNA polymerase III epsilon chain-like protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E azo0957 dnaX; DNA polymerase III subunit Tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E azo3213 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E azo0345 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E azo3385 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein E azo0356 vsr; putative hypothetical very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E azo3851 recB; ATP-dependent exoDNAse beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E azo3858 recC; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E azo3850 recD; DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E azo0507 recA; recombinase A K03553 recA; recombination protein RecA E azo0602 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E azo0601 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E azo0571 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E azo3978 priA; primosomal protein N' (Replication factor Y) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E azo0719 priB; putative primosomal replication proteinN K02686 priB; primosomal replication protein N E azo0200 sbcC; exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E azo0199 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E azo0507 recA; recombinase A K03553 recA; recombination protein RecA E azo1716 radA; probable DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E azo0477 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E azo0005 mloB; putative restriction modification gene K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E azo1505 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E azo1644 recO; DNA repair protein RecO (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) E azo0959 recombination protein RecR K06187 recR; recombination protein RecR E azo2579 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) E azo0082 rdgC; recombination associated protein RdgC K03554 rdgC; recombination associated protein RdgC E azo0602 ruvA; holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA E azo0601 ruvB; holliday junction DNA helicase K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E azo0571 ruvC; crossover junction endodeoxyribonuclease K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E azo0200 sbcC; exonuclease SbcC, putative K03546 sbcC; DNA repair protein SbcC/Rad50 E azo0199 sbcD; exonuclease SbcD, putative K03547 sbcD; DNA repair protein SbcD/Mre11 E azo0576 conserved hypothetical protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E azo1740 conserved hypothetical protein K10979 ku; DNA end-binding protein Ku E azo1741 hypothetical protein K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F azo1066 gyrA; DNA topoisomerase (ATP-hydrolysing) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F azo0003 gyrB; DNA topoisomerase (ATP-hydrolysing) K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F azo1795 conserved hypothetical protein K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F azo0315 hupB; DNA-binding protein HU (DNA-binding protein II) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F azo1505 recJ; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F azo1644 recO; DNA repair protein RecO (recombination protein O) K03584 recO; DNA repair protein RecO (recombination protein O) F azo0959 recombination protein RecR K06187 recR; recombination protein RecR F azo2001 DNA ligase (NAD+) K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F azo2893 putative fis-like DNA-binding protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F azo1085 ihfA; integration host factor alpha-subunit K04764 ihfA; integration host factor subunit alpha F azo1073 ihfB; probable integration host factor, beta-subunit K05788 ihfB; integration host factor subunit beta E Supressor F azo3318 recQ; ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F azo0088 uvrA1; putative excinuclease ABC subunit K03701 uvrA; excinuclease ABC subunit A F azo3387 uvrA2; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F azo1611 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B F azo3221 hvrA2; putative trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS F azo0194 hvrA1; putative trans-acting regulatory protein HvrA K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D azo2786 dinP; DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D azo0507 recA; recombinase A K03553 recA; recombination protein RecA D azo2064 lexA; repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D azo2579 recN; DNA repair protein K03631 recN; DNA repair protein RecN (Recombination protein N) D azo3955 conserved hypothetical protein K14160 imuA; protein ImuA D azo3956 conserved hypothetical protein K14161 imuB; protein ImuB D azo3957 DNA polymerase III, alpha subunit, putative K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D azo3385 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein D azo0506 recX; probable RecX-family regulatory protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D azo0186 rep; ATP-dependent DNA helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D azo1560 yoaA; probable ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D azo0445 probable ATP-dependent helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D azo0728 bifunctional DGTP-pyrophosphohydrolase/Thiamine-phosphate diphosphorylase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D azo1140 conserved hypothetical mutT family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D azo1139 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D azo1411 conserved hypothetical ribonucleoside reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024